Wall clock time and date at job start Sat Apr 11 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46690 * 2 1 4 4 C 1.53006 * 109.46690 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.46974 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00224 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99797 * 180.02562 * 5 4 3 8 8 C 1.47601 * 122.43027 * 0.02562 * 7 5 4 9 9 S 1.84083 * 102.63990 * 204.79066 * 8 7 5 10 10 C 1.84217 * 93.90652 * 326.56647 * 9 8 7 11 11 C 1.45505 * 122.43035 * 180.02562 * 7 5 4 12 12 H 1.09003 * 108.74966 * 57.97137 * 11 7 5 13 13 C 1.50697 * 108.75383 * 299.75100 * 11 7 5 14 14 O 1.20830 * 119.99662 * 333.01785 * 13 11 7 15 15 O 1.34230 * 120.00194 * 153.02003 * 13 11 7 16 16 C 1.45201 * 116.99968 * 185.03105 * 15 13 11 17 17 C 1.52998 * 109.46959 * 184.44659 * 16 15 13 18 18 C 1.50693 * 115.55420 * 270.69445 * 17 16 15 19 19 H 1.07997 * 120.00453 * 94.65642 * 18 17 16 20 20 C 1.37885 * 119.99981 * 274.66195 * 18 17 16 21 21 N 1.31517 * 119.99615 * 5.98512 * 20 18 17 22 22 Si 1.86800 * 120.00162 * 185.99230 * 20 18 17 23 23 H 1.48501 * 109.46909 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47230 * 119.99607 * 22 20 18 25 25 H 1.48500 * 109.46950 * 239.99966 * 22 20 18 26 26 C 1.53001 * 117.49389 * 124.98390 * 17 16 15 27 27 C 1.53000 * 117.49491 * 56.36499 * 17 16 15 28 28 H 1.08998 * 109.46996 * 300.00230 * 1 2 3 29 29 H 1.08996 * 109.47059 * 59.99947 * 1 2 3 30 30 H 1.08998 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46775 * 240.00263 * 2 1 3 32 32 H 1.08996 * 109.47059 * 120.00053 * 2 1 3 33 33 H 1.08998 * 109.47589 * 60.00133 * 3 2 1 34 34 H 1.09000 * 109.47502 * 299.99328 * 3 2 1 35 35 H 1.08998 * 109.46996 * 59.99769 * 4 3 2 36 36 H 1.08996 * 109.47059 * 300.00053 * 4 3 2 37 37 H 1.09000 * 110.77773 * 86.51034 * 8 7 5 38 38 H 1.08999 * 110.77701 * 323.07439 * 8 7 5 39 39 H 1.09002 * 111.04935 * 150.27276 * 10 9 8 40 40 H 1.09002 * 111.05093 * 274.23877 * 10 9 8 41 41 H 1.08994 * 109.47206 * 304.45086 * 16 15 13 42 42 H 1.09002 * 109.47076 * 64.44809 * 16 15 13 43 43 H 0.97001 * 119.99716 * 185.00188 * 21 20 18 44 44 H 1.08998 * 117.49915 * 0.02562 * 26 17 16 45 45 H 1.09002 * 117.49640 * 145.02776 * 26 17 16 46 46 H 1.09006 * 117.50001 * 214.97732 * 27 17 16 47 47 H 1.08998 * 117.50184 * 359.97405 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2842 3.7852 0.0004 7 7 5.3974 3.1097 -0.0009 8 6 6.4032 2.0294 -0.0032 9 16 7.8718 2.8450 0.7496 10 6 7.4851 4.4938 0.0247 11 6 5.9401 4.4597 0.0002 12 1 5.5637 4.9879 0.8762 13 6 5.4627 5.1748 -1.2374 14 8 5.1859 4.5445 -2.2304 15 8 5.3450 6.5119 -1.2367 16 6 4.7738 7.1241 -2.4230 17 6 4.8221 8.6470 -2.2846 18 6 3.6221 9.2784 -1.6271 19 1 3.6332 9.4846 -0.5671 20 6 2.5099 9.5928 -2.3790 21 7 2.4486 9.2360 -3.6433 22 14 1.0903 10.5257 -1.6018 23 1 1.4037 10.8073 -0.1778 24 1 0.8834 11.8054 -2.3261 25 1 -0.1448 9.7053 -1.6835 26 6 5.5152 9.4358 -3.3974 27 6 6.1869 9.2903 -2.0305 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 6.6204 1.7054 -1.0210 38 1 6.0710 1.1906 0.6084 39 1 7.8488 5.2978 0.6645 40 1 7.8911 4.5835 -0.9829 41 1 5.3458 6.8206 -3.2997 42 1 3.7385 6.8021 -2.5353 43 1 1.7001 9.5193 -4.1914 44 1 5.9363 8.8697 -4.2283 45 1 5.1031 10.4117 -3.6543 46 1 6.2167 10.1704 -1.3880 47 1 7.0502 8.6285 -1.9615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079168505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:49 Heat of formation + Delta-G solvation = -96.640633 kcal Electronic energy + Delta-G solvation = -28232.472059 eV Core-core repulsion = 24314.520262 eV Total energy + Delta-G solvation = -3917.951797 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.79924 -39.35563 -37.10038 -36.30271 -35.47767 -35.21549 -32.22571 -31.95524 -30.33217 -27.82151 -26.96931 -25.52605 -25.23904 -23.70604 -21.66779 -21.19338 -20.71447 -19.30721 -19.17331 -17.79620 -17.67145 -17.05251 -16.42626 -16.26398 -15.64672 -15.57236 -15.41096 -14.76007 -14.60599 -14.25025 -14.06706 -13.92722 -13.81660 -13.50202 -13.17545 -13.01675 -12.68341 -12.44036 -12.37836 -12.15534 -11.99519 -11.59085 -11.52704 -11.41034 -11.21355 -11.12639 -11.00555 -10.83429 -10.77227 -10.52042 -10.31396 -10.17070 -9.94600 -9.91820 -9.58932 -9.08810 -8.77862 -8.46837 -8.27246 -8.23536 -6.07587 -4.14072 1.20657 1.54034 2.15197 2.51869 2.61502 3.25236 3.30666 3.38052 3.42342 3.90695 4.31310 4.40396 4.53427 4.58963 4.60520 4.74461 4.85342 4.93914 5.02266 5.06835 5.11457 5.21080 5.23053 5.29026 5.40402 5.46058 5.61269 5.62579 5.72090 5.82831 5.96383 5.97768 6.06060 6.21272 6.23792 6.34142 6.53173 6.62358 6.71297 6.88281 7.02057 7.19574 7.37257 7.46355 7.85854 7.92507 8.26491 8.37181 8.89101 9.52996 11.01620 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008949 B = 0.003668 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.201576 B = 7632.043506 C =10102.504317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.109 4.109 4 C -0.133 4.133 5 C 0.526 3.474 6 O -0.507 6.507 7 N -0.605 5.605 8 C 0.154 3.846 9 S -0.256 6.256 10 C -0.058 4.058 11 C 0.141 3.859 12 H 0.123 0.877 13 C 0.453 3.547 14 O -0.508 6.508 15 O -0.341 6.341 16 C 0.118 3.882 17 C 0.038 3.962 18 C -0.493 4.493 19 H 0.064 0.936 20 C 0.070 3.930 21 N -0.879 5.879 22 Si 0.892 3.108 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.147 4.147 27 C -0.198 4.198 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.261 0.739 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.374 -18.722 8.137 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.147 4.147 4 C -0.172 4.172 5 C 0.314 3.686 6 O -0.380 6.380 7 N -0.344 5.344 8 C -0.079 4.079 9 S -0.029 6.029 10 C -0.206 4.206 11 C 0.033 3.967 12 H 0.140 0.860 13 C 0.293 3.707 14 O -0.397 6.397 15 O -0.255 6.255 16 C 0.045 3.955 17 C 0.037 3.963 18 C -0.531 4.531 19 H 0.082 0.918 20 C -0.133 4.133 21 N -0.516 5.516 22 Si 0.719 3.281 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.184 4.184 27 C -0.235 4.235 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.138 0.862 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.575 -18.821 8.393 21.955 hybrid contribution -1.608 0.855 -0.751 1.970 sum 5.967 -17.966 7.642 20.415 Atomic orbital electron populations 1.21764 0.95610 1.01455 1.02272 1.21526 0.96279 0.96367 1.01848 1.21429 0.92202 0.96862 1.04169 1.21707 0.98557 0.92643 1.04337 1.20760 0.80005 0.92572 0.75244 1.90834 1.53791 1.46404 1.46963 1.48332 1.06222 1.04006 1.75812 1.24281 0.87227 0.92454 1.03954 1.88333 1.36258 1.09906 1.68423 1.24455 0.92729 0.97340 1.06088 1.20756 0.94007 0.84143 0.97755 0.85970 1.23406 0.75360 0.82948 0.88997 1.90612 1.46395 1.67896 1.34747 1.86501 1.73555 1.19434 1.46050 1.23155 0.97381 0.93471 0.81464 1.18818 0.91292 0.86866 0.99325 1.20498 0.97240 1.40377 0.94950 0.91777 1.25017 0.97890 0.95336 0.95106 1.70024 1.31613 1.43420 1.06524 0.86536 0.82312 0.79542 0.79713 1.19523 1.20868 1.20929 1.22581 1.03377 1.02123 0.90317 1.22892 0.96956 1.03078 1.00576 0.92603 0.92489 0.92825 0.91965 0.92047 0.90956 0.90803 0.88561 0.88732 0.88124 0.86182 0.84390 0.87383 0.93930 0.90581 0.92907 0.91722 0.89451 0.90050 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.88 16 2 C -0.12 -0.96 5.93 -26.73 -0.16 -1.12 16 3 C -0.11 -1.14 4.50 -26.73 -0.12 -1.26 16 4 C -0.13 -1.25 4.49 -27.88 -0.13 -1.37 16 5 C 0.53 7.52 7.14 -10.99 -0.08 7.44 16 6 O -0.51 -9.86 15.33 5.56 0.09 -9.78 16 7 N -0.61 -7.67 2.67 -169.16 -0.45 -8.12 16 8 C 0.15 1.33 7.21 60.45 0.44 1.76 16 9 S -0.26 -2.43 23.43 -107.50 -2.52 -4.95 16 10 C -0.06 -0.61 7.03 37.97 0.27 -0.34 16 11 C 0.14 1.99 2.95 -68.80 -0.20 1.78 16 12 H 0.12 1.73 8.14 -51.93 -0.42 1.31 16 13 C 0.45 8.72 5.78 36.00 0.21 8.93 16 14 O -0.51 -10.99 15.92 -18.75 -0.30 -11.29 16 15 O -0.34 -7.43 10.07 -39.26 -0.40 -7.82 16 16 C 0.12 2.90 5.55 37.16 0.21 3.11 16 17 C 0.04 0.95 1.65 -155.66 -0.26 0.69 16 18 C -0.49 -13.76 8.78 -34.44 -0.30 -14.06 16 19 H 0.06 1.80 7.82 -52.49 -0.41 1.39 16 20 C 0.07 1.95 5.39 -17.82 -0.10 1.86 16 21 N -0.88 -25.29 12.91 55.43 0.72 -24.57 16 22 Si 0.89 21.55 29.55 -169.99 -5.02 16.53 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 26 C -0.15 -3.43 9.36 -26.73 -0.25 -3.68 16 27 C -0.20 -4.30 9.80 -26.73 -0.26 -4.56 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 34 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.61 7.63 -51.93 -0.40 0.21 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.12 0.67 7.13 -51.93 -0.37 0.30 16 39 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.11 1.14 7.84 -51.93 -0.41 0.74 16 41 H 0.04 1.01 7.72 -51.93 -0.40 0.61 16 42 H 0.08 2.12 8.05 -51.93 -0.42 1.70 16 43 H 0.26 7.15 8.32 -40.82 -0.34 6.81 16 44 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 45 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 46 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 47 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -33.95 403.11 -10.05 -44.00 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.87 Total: 1.62 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -0.37 Total: -1.70 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.26 Total: -32.69 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.61 Total: -28.89 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -2.52 Total: -4.95 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.95 -10.05 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079168505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.638 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds