Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46690 * 2 1 4 4 C 1.53006 * 109.46690 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.46974 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00224 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99797 * 180.02562 * 5 4 3 8 8 C 1.47601 * 122.43027 * 0.02562 * 7 5 4 9 9 S 1.84083 * 102.63990 * 204.79066 * 8 7 5 10 10 C 1.84217 * 93.90652 * 326.56647 * 9 8 7 11 11 C 1.45505 * 122.43035 * 180.02562 * 7 5 4 12 12 H 1.09003 * 108.74966 * 57.97137 * 11 7 5 13 13 C 1.50697 * 108.75383 * 299.75100 * 11 7 5 14 14 O 1.20830 * 119.99662 * 333.01785 * 13 11 7 15 15 O 1.34230 * 120.00194 * 153.02003 * 13 11 7 16 16 C 1.45201 * 116.99968 * 185.03105 * 15 13 11 17 17 C 1.52998 * 109.46959 * 184.44659 * 16 15 13 18 18 C 1.50693 * 115.55420 * 270.69445 * 17 16 15 19 19 H 1.07997 * 120.00453 * 94.65642 * 18 17 16 20 20 C 1.37885 * 119.99981 * 274.66195 * 18 17 16 21 21 N 1.31517 * 119.99615 * 5.98512 * 20 18 17 22 22 Si 1.86800 * 120.00162 * 185.99230 * 20 18 17 23 23 H 1.48501 * 109.46909 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47230 * 119.99607 * 22 20 18 25 25 H 1.48500 * 109.46950 * 239.99966 * 22 20 18 26 26 C 1.53001 * 117.49389 * 124.98390 * 17 16 15 27 27 C 1.53000 * 117.49491 * 56.36499 * 17 16 15 28 28 H 1.08998 * 109.46996 * 300.00230 * 1 2 3 29 29 H 1.08996 * 109.47059 * 59.99947 * 1 2 3 30 30 H 1.08998 * 109.47104 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46775 * 240.00263 * 2 1 3 32 32 H 1.08996 * 109.47059 * 120.00053 * 2 1 3 33 33 H 1.08998 * 109.47589 * 60.00133 * 3 2 1 34 34 H 1.09000 * 109.47502 * 299.99328 * 3 2 1 35 35 H 1.08998 * 109.46996 * 59.99769 * 4 3 2 36 36 H 1.08996 * 109.47059 * 300.00053 * 4 3 2 37 37 H 1.09000 * 110.77773 * 86.51034 * 8 7 5 38 38 H 1.08999 * 110.77701 * 323.07439 * 8 7 5 39 39 H 1.09002 * 111.04935 * 150.27276 * 10 9 8 40 40 H 1.09002 * 111.05093 * 274.23877 * 10 9 8 41 41 H 1.08994 * 109.47206 * 304.45086 * 16 15 13 42 42 H 1.09002 * 109.47076 * 64.44809 * 16 15 13 43 43 H 0.97001 * 119.99716 * 185.00188 * 21 20 18 44 44 H 1.08998 * 117.49915 * 0.02562 * 26 17 16 45 45 H 1.09002 * 117.49640 * 145.02776 * 26 17 16 46 46 H 1.09006 * 117.50001 * 214.97732 * 27 17 16 47 47 H 1.08998 * 117.50184 * 359.97405 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2842 3.7852 0.0004 7 7 5.3974 3.1097 -0.0009 8 6 6.4032 2.0294 -0.0032 9 16 7.8718 2.8450 0.7496 10 6 7.4851 4.4938 0.0247 11 6 5.9401 4.4597 0.0002 12 1 5.5637 4.9879 0.8762 13 6 5.4627 5.1748 -1.2374 14 8 5.1859 4.5445 -2.2304 15 8 5.3450 6.5119 -1.2367 16 6 4.7738 7.1241 -2.4230 17 6 4.8221 8.6470 -2.2846 18 6 3.6221 9.2784 -1.6271 19 1 3.6332 9.4846 -0.5671 20 6 2.5099 9.5928 -2.3790 21 7 2.4486 9.2360 -3.6433 22 14 1.0903 10.5257 -1.6018 23 1 1.4037 10.8073 -0.1778 24 1 0.8834 11.8054 -2.3261 25 1 -0.1448 9.7053 -1.6835 26 6 5.5152 9.4358 -3.3974 27 6 6.1869 9.2903 -2.0305 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 6.6204 1.7054 -1.0210 38 1 6.0710 1.1906 0.6084 39 1 7.8488 5.2978 0.6645 40 1 7.8911 4.5835 -0.9829 41 1 5.3458 6.8206 -3.2997 42 1 3.7385 6.8021 -2.5353 43 1 1.7001 9.5193 -4.1914 44 1 5.9363 8.8697 -4.2283 45 1 5.1031 10.4117 -3.6543 46 1 6.2167 10.1704 -1.3880 47 1 7.0502 8.6285 -1.9615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079168505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = -115.790221 kcal Electronic energy + Delta-G solvation = -28233.302448 eV Core-core repulsion = 24314.520262 eV Total energy + Delta-G solvation = -3918.782185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.12025 -40.76749 -38.76342 -37.61254 -36.93413 -36.30601 -34.08616 -33.21069 -31.11879 -29.06719 -28.43636 -27.40834 -26.30534 -24.85449 -23.07054 -22.56396 -21.75139 -21.22735 -20.39059 -19.18837 -18.79955 -18.36848 -17.95732 -17.49685 -17.18888 -16.82251 -16.64375 -16.43736 -15.83044 -15.68856 -15.18955 -14.89919 -14.84509 -14.64207 -14.53400 -14.06840 -13.87253 -13.80878 -13.64621 -13.43033 -13.21392 -13.13378 -13.01568 -12.85603 -12.45748 -12.28557 -12.25332 -12.12569 -12.10692 -11.91690 -11.80614 -11.64561 -11.48448 -11.42184 -11.04924 -10.78696 -10.55718 -10.24664 -10.08858 -8.98149 -8.21058 -6.33686 0.44731 0.69705 0.90769 1.28206 1.35310 1.38313 1.49454 1.50087 1.86825 2.37188 2.93777 3.07705 3.28476 3.41169 3.59724 3.76209 3.82699 3.93306 4.04486 4.05287 4.22036 4.25472 4.30454 4.32458 4.34231 4.40434 4.43467 4.55156 4.60964 4.66163 4.73865 4.87021 4.87697 4.94586 4.98116 5.07381 5.14502 5.25731 5.35588 5.43239 5.47307 5.52270 5.59042 5.67946 5.88642 6.28744 6.60819 6.73499 6.87656 7.36411 8.88154 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008949 B = 0.003668 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.201576 B = 7632.043506 C =10102.504317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 C -0.109 4.109 4 C -0.123 4.123 5 C 0.516 3.484 6 O -0.574 6.574 7 N -0.606 5.606 8 C 0.149 3.851 9 S -0.238 6.238 10 C -0.056 4.056 11 C 0.146 3.854 12 H 0.119 0.881 13 C 0.448 3.552 14 O -0.537 6.537 15 O -0.347 6.347 16 C 0.137 3.863 17 C 0.001 3.999 18 C -0.512 4.512 19 H 0.054 0.946 20 C 0.024 3.976 21 N -0.908 5.908 22 Si 0.951 3.049 23 H -0.265 1.265 24 H -0.271 1.271 25 H -0.287 1.287 26 C -0.146 4.146 27 C -0.165 4.165 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.036 0.964 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.113 0.887 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.108 0.892 41 H 0.045 0.955 42 H 0.028 0.972 43 H 0.262 0.738 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.307 -20.831 9.697 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.152 4.152 3 C -0.147 4.147 4 C -0.162 4.162 5 C 0.306 3.694 6 O -0.452 6.452 7 N -0.342 5.342 8 C -0.082 4.082 9 S -0.011 6.011 10 C -0.204 4.204 11 C 0.038 3.962 12 H 0.137 0.863 13 C 0.289 3.711 14 O -0.427 6.427 15 O -0.262 6.262 16 C 0.063 3.937 17 C 0.000 4.000 18 C -0.549 4.549 19 H 0.072 0.928 20 C -0.177 4.177 21 N -0.545 5.545 22 Si 0.776 3.224 23 H -0.189 1.189 24 H -0.196 1.196 25 H -0.213 1.213 26 C -0.184 4.184 27 C -0.202 4.202 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.138 0.862 36 H 0.156 0.844 37 H 0.131 0.869 38 H 0.178 0.822 39 H 0.177 0.823 40 H 0.126 0.874 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.106 0.894 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.563 -20.963 9.970 25.106 hybrid contribution -2.184 1.417 -1.214 2.873 sum 7.379 -19.546 8.756 22.653 Atomic orbital electron populations 1.21808 0.96230 1.02200 1.01304 1.21493 0.95741 0.94397 1.03541 1.21395 0.93423 0.98293 1.01578 1.21815 0.97352 0.89678 1.07375 1.21779 0.79991 0.93945 0.73639 1.90808 1.55602 1.48667 1.50098 1.48515 1.06697 1.04416 1.74599 1.24686 0.85835 0.92068 1.05658 1.88334 1.36264 1.08379 1.68126 1.24465 0.89571 0.99412 1.06976 1.20913 0.96425 0.84641 0.94236 0.86349 1.24567 0.74167 0.81881 0.90448 1.90582 1.47686 1.68000 1.36412 1.86501 1.73581 1.21357 1.44786 1.22592 0.94799 0.93621 0.82687 1.18861 0.92587 0.87054 1.01459 1.20769 0.98756 1.40685 0.94715 0.92793 1.25744 1.00160 0.96194 0.95585 1.70119 1.32423 1.44342 1.07646 0.85607 0.78982 0.78566 0.79200 1.18939 1.19577 1.21304 1.22520 1.03448 1.01085 0.91314 1.22915 0.95668 1.02789 0.98824 0.93154 0.94014 0.91146 0.90759 0.89653 0.92716 0.94485 0.86199 0.84414 0.86939 0.82226 0.82311 0.87378 0.93684 0.95387 0.92865 0.90515 0.91056 0.89365 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.91 71.98 0.71 -1.74 16 2 C -0.11 -1.57 5.93 30.60 0.18 -1.39 16 3 C -0.11 -2.27 4.50 30.60 0.14 -2.13 16 4 C -0.12 -2.04 4.49 29.85 0.13 -1.91 16 5 C 0.52 14.58 7.14 87.66 0.63 15.20 16 6 O -0.57 -23.55 15.33 -3.03 -0.05 -23.59 16 7 N -0.61 -14.47 2.67 -807.48 -2.15 -16.62 16 8 C 0.15 2.04 7.21 127.56 0.92 2.96 16 9 S -0.24 -3.73 23.43 -56.49 -1.32 -5.05 16 10 C -0.06 -1.06 7.03 72.51 0.51 -0.55 16 11 C 0.15 4.04 2.95 44.96 0.13 4.17 16 12 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 13 C 0.45 17.66 5.78 71.23 0.41 18.07 16 14 O -0.54 -24.00 15.92 21.95 0.35 -23.65 16 15 O -0.35 -15.60 10.07 -51.42 -0.52 -16.11 16 16 C 0.14 7.01 5.55 71.98 0.40 7.41 16 17 C 0.00 0.05 1.65 -52.93 -0.09 -0.04 16 18 C -0.51 -29.37 8.78 25.60 0.22 -29.15 16 19 H 0.05 3.11 7.82 -2.91 -0.02 3.08 16 20 C 0.02 1.36 5.39 84.66 0.46 1.82 16 21 N -0.91 -53.90 12.91 21.45 0.28 -53.62 16 22 Si 0.95 45.24 29.55 68.60 2.03 47.27 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 C -0.15 -6.87 9.36 30.59 0.29 -6.59 16 27 C -0.16 -7.00 9.80 30.59 0.30 -6.70 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 1.30 8.10 -2.39 -0.02 1.28 16 34 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 35 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.14 1.12 7.63 -2.39 -0.02 1.11 16 37 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.16 0.93 7.13 -2.39 -0.02 0.91 16 39 H 0.16 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.11 2.09 7.84 -2.39 -0.02 2.07 16 41 H 0.04 2.22 7.72 -2.39 -0.02 2.21 16 42 H 0.03 1.66 8.05 -2.39 -0.02 1.64 16 43 H 0.26 14.78 8.32 -92.71 -0.77 14.01 16 44 H 0.08 3.36 8.03 -2.39 -0.02 3.34 16 45 H 0.07 3.55 8.14 -2.39 -0.02 3.53 16 46 H 0.09 3.61 8.14 -2.38 -0.02 3.59 16 47 H 0.09 3.48 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -79.24 403.11 4.90 -74.34 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.94 Total: 17.62 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 5.35 Total: -0.57 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -1.88 Total: -70.25 kcal Atomic # 8 Polarization: -63.15 SS G_CDS: -0.21 Total: -63.36 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.32 Total: -5.05 kcal Total: -79.24 4.90 -74.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079168505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.451 kcal (2) G-P(sol) polarization free energy of solvation -79.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds