Wall clock time and date at job start Sat Apr 11 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46991 * 2 1 4 4 C 1.53001 * 109.46916 * 179.97438 * 3 2 1 5 5 O 1.42907 * 109.46639 * 180.02562 * 4 3 2 6 6 C 1.42905 * 113.99479 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46807 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46869 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.46690 * 180.02562 * 8 7 6 10 10 S 1.65600 * 119.99765 * 164.72873 * 9 8 7 11 11 O 1.42094 * 106.40512 * 178.53760 * 10 9 8 12 12 O 1.42106 * 106.40226 * 311.45618 * 10 9 8 13 13 C 1.76198 * 107.22067 * 64.99582 * 10 9 8 14 14 C 1.38640 * 119.75037 * 269.72949 * 13 10 9 15 15 C 1.37618 * 120.24754 * 179.72238 * 14 13 10 16 16 C 1.40708 * 119.74303 * 0.56852 * 15 14 13 17 17 C 1.41395 * 120.24350 * 179.68190 * 16 15 14 18 18 H 1.07999 * 120.00421 * 204.40366 * 17 16 15 19 19 C 1.39948 * 120.00045 * 24.41232 * 17 16 15 20 20 N 1.30828 * 119.99938 * 17.83864 * 19 17 16 21 21 Si 1.86804 * 120.00206 * 197.84763 * 19 17 16 22 22 H 1.48497 * 109.46953 * 59.99362 * 21 19 17 23 23 H 1.48494 * 109.47057 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46965 * 299.99721 * 21 19 17 25 25 C 1.40718 * 119.51587 * 359.70656 * 16 15 14 26 26 C 1.37623 * 119.74191 * 359.97438 * 25 16 15 27 27 H 1.08997 * 109.47088 * 60.00069 * 1 2 3 28 28 H 1.09001 * 109.46816 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47676 * 299.99680 * 1 2 3 30 30 H 1.09001 * 109.47455 * 239.99874 * 2 1 3 31 31 H 1.09003 * 109.46729 * 119.99658 * 2 1 3 32 32 H 1.09001 * 109.47153 * 60.00227 * 3 2 1 33 33 H 1.08997 * 109.47148 * 299.99894 * 3 2 1 34 34 H 1.08996 * 109.46808 * 60.00861 * 4 3 2 35 35 H 1.08997 * 109.47561 * 300.00175 * 4 3 2 36 36 H 1.08997 * 109.47025 * 60.00226 * 6 5 4 37 37 H 1.08999 * 109.47282 * 299.99785 * 6 5 4 38 38 H 1.08997 * 109.47183 * 60.00274 * 7 6 5 39 39 H 1.08999 * 109.46984 * 299.99919 * 7 6 5 40 40 H 1.08997 * 109.46914 * 60.00208 * 8 7 6 41 41 H 1.08999 * 109.47332 * 299.99805 * 8 7 6 42 42 H 0.96997 * 120.00372 * 344.99577 * 9 8 7 43 43 H 1.08001 * 119.87510 * 359.97438 * 14 13 10 44 44 H 1.07997 * 120.12712 * 180.27635 * 15 14 13 45 45 H 0.96994 * 120.00050 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.13001 * 179.97438 * 25 16 15 47 47 H 1.07999 * 119.87507 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 8 4.0462 2.7899 0.0012 6 6 5.4708 2.9027 0.0013 7 6 5.8652 4.3809 0.0026 8 6 7.3905 4.5017 0.0033 9 7 7.7682 5.9173 0.0052 10 16 9.3182 6.3601 0.3840 11 8 9.3720 7.7750 0.2643 12 8 9.6525 5.6680 1.5793 13 6 10.3679 5.7140 -0.8751 14 6 10.9173 4.4493 -0.7309 15 6 11.7339 3.9324 -1.7106 16 6 12.0200 4.6974 -2.8564 17 6 12.8630 4.1794 -3.8664 18 1 13.3966 4.8517 -4.5219 19 6 13.0060 2.7953 -4.0168 20 7 12.1265 1.9854 -3.4857 21 14 14.4526 2.1044 -4.9756 22 1 15.7214 2.5283 -4.3309 23 1 14.3754 0.6216 -4.9879 24 1 14.4113 2.6144 -6.3697 25 6 11.4614 5.9821 -2.9894 26 6 10.6422 6.4762 -2.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9336 0.9287 -0.8892 35 1 3.9330 0.9288 0.8908 36 1 5.8735 2.4196 -0.8889 37 1 5.8736 2.4188 0.8911 38 1 5.4625 4.8637 0.8930 39 1 5.4624 4.8652 -0.8869 40 1 7.7936 4.0189 -0.8869 41 1 7.7930 4.0176 0.8931 42 1 7.1094 6.5953 -0.2117 43 1 10.7004 3.8660 0.1518 44 1 12.1573 2.9452 -1.5983 45 1 12.2257 1.0261 -3.5896 46 1 11.6747 6.5780 -3.8645 47 1 10.2126 7.4621 -2.0999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080710299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:52 Heat of formation + Delta-G solvation = -140.268760 kcal Electronic energy + Delta-G solvation = -26575.008756 eV Core-core repulsion = 22655.165102 eV Total energy + Delta-G solvation = -3919.843654 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.44051 -37.58815 -36.54558 -35.97435 -35.12845 -35.03093 -34.05549 -31.36555 -30.27187 -29.47922 -29.15038 -25.83356 -24.97167 -23.44037 -21.95606 -21.50819 -21.20510 -21.12083 -18.83149 -17.63287 -17.08012 -16.88882 -16.70472 -16.40781 -15.69355 -15.49414 -15.42635 -14.86504 -14.45649 -14.27909 -14.11013 -13.59324 -13.39722 -13.24217 -13.09644 -12.78515 -12.42655 -12.22295 -12.17550 -12.00421 -11.80576 -11.52653 -11.48963 -11.46534 -11.37450 -11.29149 -11.24942 -11.19074 -11.07441 -10.99781 -10.91896 -10.88110 -10.44379 -9.77667 -9.73639 -9.65212 -9.51723 -9.03752 -7.97696 -7.71754 -7.16629 -4.81914 1.26124 2.24286 2.86373 2.87887 2.90788 2.93525 3.36015 3.64509 3.79562 4.22506 4.53038 4.57809 4.65074 4.74150 4.88759 4.98109 4.99267 5.07871 5.17019 5.23004 5.28967 5.37409 5.40159 5.45619 5.49249 5.53089 5.57779 5.69696 5.76388 5.87479 5.90364 5.97659 6.06262 6.10115 6.11212 6.28860 6.66385 6.69382 6.89883 7.03585 7.04991 7.29924 7.33968 7.41556 7.61967 7.75404 7.95321 8.30019 8.49587 8.63454 9.74769 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008678 B = 0.002487 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.905603 B =11254.426416 C =13941.926634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.119 4.119 4 C 0.061 3.939 5 O -0.391 6.391 6 C 0.063 3.937 7 C -0.123 4.123 8 C 0.124 3.876 9 N -1.126 6.126 10 S 2.696 3.304 11 O -0.986 6.986 12 O -0.985 6.985 13 C -0.787 4.787 14 C -0.018 4.018 15 C -0.183 4.183 16 C 0.139 3.861 17 C -0.435 4.435 18 H 0.087 0.913 19 C 0.072 3.928 20 N -0.766 5.766 21 Si 0.918 3.082 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.261 1.261 25 C -0.239 4.239 26 C 0.003 3.997 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.410 0.590 43 H 0.103 0.897 44 H 0.122 0.878 45 H 0.289 0.711 46 H 0.100 0.900 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.003 -5.179 3.365 16.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.157 4.157 4 C -0.016 4.016 5 O -0.310 6.310 6 C -0.015 4.015 7 C -0.162 4.162 8 C -0.003 4.003 9 N -0.882 5.882 10 S 2.794 3.206 11 O -0.977 6.977 12 O -0.975 6.975 13 C -0.883 4.883 14 C -0.038 4.038 15 C -0.203 4.203 16 C 0.135 3.865 17 C -0.462 4.462 18 H 0.105 0.895 19 C -0.150 4.150 20 N -0.389 5.389 21 Si 0.741 3.259 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.186 1.186 25 C -0.260 4.260 26 C -0.018 4.018 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.243 0.757 43 H 0.121 0.879 44 H 0.140 0.860 45 H 0.100 0.900 46 H 0.118 0.882 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.859 -4.931 4.211 16.212 hybrid contribution 0.637 -0.789 -1.288 1.639 sum -14.221 -5.719 2.923 15.605 Atomic orbital electron populations 1.21752 0.95439 1.01703 1.02016 1.21452 0.96225 0.96113 1.02289 1.21552 0.93601 0.97178 1.03340 1.22517 0.94969 0.83851 1.00255 1.87837 1.21351 1.26316 1.95516 1.22432 0.80960 0.97177 1.00891 1.21656 0.95039 0.95520 1.03968 1.21037 0.94800 0.81728 1.02747 1.55694 1.30014 1.13465 1.89048 1.01150 0.72198 0.72761 0.74451 1.93490 1.86377 1.29888 1.87916 1.93481 1.83145 1.75594 1.45275 1.29154 1.29903 1.09045 1.20206 1.20268 0.94702 0.92094 0.96723 1.21329 1.03754 1.01309 0.93894 1.17856 0.87029 0.90621 0.90979 1.19914 1.21456 0.91795 1.13068 0.89474 1.26134 0.96530 0.97245 0.95065 1.69805 1.30199 1.05715 1.33159 0.86192 0.81270 0.78033 0.80436 1.18345 1.19906 1.18558 1.21049 1.05941 0.98953 1.00023 1.20169 0.94377 0.95836 0.91371 0.92604 0.92632 0.92626 0.91777 0.91826 0.91183 0.91133 0.93287 0.93381 0.92647 0.92867 0.90506 0.90427 0.91081 0.90428 0.75734 0.87889 0.85983 0.89955 0.88214 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.12 -0.94 5.58 -26.73 -0.15 -1.09 16 4 C 0.06 0.56 5.94 37.16 0.22 0.78 16 5 O -0.39 -4.54 10.34 -35.23 -0.36 -4.91 16 6 C 0.06 0.68 5.94 37.16 0.22 0.90 16 7 C -0.12 -1.38 5.73 -26.73 -0.15 -1.54 16 8 C 0.12 1.66 6.23 -4.04 -0.03 1.64 16 9 N -1.13 -16.53 6.00 -10.61 -0.06 -16.60 16 10 S 2.70 51.03 5.73 -107.50 -0.62 50.41 16 11 O -0.99 -20.60 17.26 -57.17 -0.99 -21.59 16 12 O -0.98 -20.74 16.72 -57.17 -0.96 -21.69 16 13 C -0.79 -17.05 5.97 -39.29 -0.23 -17.28 16 14 C -0.02 -0.40 9.49 -39.66 -0.38 -0.77 16 15 C -0.18 -4.49 8.70 -38.88 -0.34 -4.82 16 16 C 0.14 3.48 5.57 -106.83 -0.60 2.89 16 17 C -0.44 -10.56 9.05 -37.74 -0.34 -10.90 16 18 H 0.09 2.00 7.91 -52.49 -0.41 1.59 16 19 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 20 N -0.77 -17.83 10.95 55.55 0.61 -17.22 16 21 Si 0.92 16.83 29.60 -169.99 -5.03 11.80 16 22 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 23 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 24 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 25 C -0.24 -5.61 9.80 -38.87 -0.38 -5.99 16 26 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.05 7.74 -51.93 -0.40 0.65 16 42 H 0.41 5.03 8.65 -34.47 -0.30 4.73 16 43 H 0.10 2.14 7.59 -52.49 -0.40 1.75 16 44 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 45 H 0.29 6.04 8.30 -40.82 -0.34 5.70 16 46 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 47 H 0.10 2.09 7.60 -52.49 -0.40 1.69 16 LS Contribution 402.38 15.07 6.06 6.06 Total: -1.00 -29.77 402.38 -11.47 -41.24 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -7.71 Total: 8.92 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: -2.41 Total: -36.42 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.54 Total: -33.82 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -2.31 Total: -48.19 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Atomic # 16 Polarization: 51.03 SS G_CDS: -0.62 Total: 50.41 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.77 -11.47 -41.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080710299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.031 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds