Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46991 * 2 1 4 4 C 1.53001 * 109.46916 * 179.97438 * 3 2 1 5 5 O 1.42907 * 109.46639 * 180.02562 * 4 3 2 6 6 C 1.42905 * 113.99479 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46807 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46869 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.46690 * 180.02562 * 8 7 6 10 10 S 1.65600 * 119.99765 * 164.72873 * 9 8 7 11 11 O 1.42094 * 106.40512 * 178.53760 * 10 9 8 12 12 O 1.42106 * 106.40226 * 311.45618 * 10 9 8 13 13 C 1.76198 * 107.22067 * 64.99582 * 10 9 8 14 14 C 1.38640 * 119.75037 * 269.72949 * 13 10 9 15 15 C 1.37618 * 120.24754 * 179.72238 * 14 13 10 16 16 C 1.40708 * 119.74303 * 0.56852 * 15 14 13 17 17 C 1.41395 * 120.24350 * 179.68190 * 16 15 14 18 18 H 1.07999 * 120.00421 * 204.40366 * 17 16 15 19 19 C 1.39948 * 120.00045 * 24.41232 * 17 16 15 20 20 N 1.30828 * 119.99938 * 17.83864 * 19 17 16 21 21 Si 1.86804 * 120.00206 * 197.84763 * 19 17 16 22 22 H 1.48497 * 109.46953 * 59.99362 * 21 19 17 23 23 H 1.48494 * 109.47057 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46965 * 299.99721 * 21 19 17 25 25 C 1.40718 * 119.51587 * 359.70656 * 16 15 14 26 26 C 1.37623 * 119.74191 * 359.97438 * 25 16 15 27 27 H 1.08997 * 109.47088 * 60.00069 * 1 2 3 28 28 H 1.09001 * 109.46816 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47676 * 299.99680 * 1 2 3 30 30 H 1.09001 * 109.47455 * 239.99874 * 2 1 3 31 31 H 1.09003 * 109.46729 * 119.99658 * 2 1 3 32 32 H 1.09001 * 109.47153 * 60.00227 * 3 2 1 33 33 H 1.08997 * 109.47148 * 299.99894 * 3 2 1 34 34 H 1.08996 * 109.46808 * 60.00861 * 4 3 2 35 35 H 1.08997 * 109.47561 * 300.00175 * 4 3 2 36 36 H 1.08997 * 109.47025 * 60.00226 * 6 5 4 37 37 H 1.08999 * 109.47282 * 299.99785 * 6 5 4 38 38 H 1.08997 * 109.47183 * 60.00274 * 7 6 5 39 39 H 1.08999 * 109.46984 * 299.99919 * 7 6 5 40 40 H 1.08997 * 109.46914 * 60.00208 * 8 7 6 41 41 H 1.08999 * 109.47332 * 299.99805 * 8 7 6 42 42 H 0.96997 * 120.00372 * 344.99577 * 9 8 7 43 43 H 1.08001 * 119.87510 * 359.97438 * 14 13 10 44 44 H 1.07997 * 120.12712 * 180.27635 * 15 14 13 45 45 H 0.96994 * 120.00050 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.13001 * 179.97438 * 25 16 15 47 47 H 1.07999 * 119.87507 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 8 4.0462 2.7899 0.0012 6 6 5.4708 2.9027 0.0013 7 6 5.8652 4.3809 0.0026 8 6 7.3905 4.5017 0.0033 9 7 7.7682 5.9173 0.0052 10 16 9.3182 6.3601 0.3840 11 8 9.3720 7.7750 0.2643 12 8 9.6525 5.6680 1.5793 13 6 10.3679 5.7140 -0.8751 14 6 10.9173 4.4493 -0.7309 15 6 11.7339 3.9324 -1.7106 16 6 12.0200 4.6974 -2.8564 17 6 12.8630 4.1794 -3.8664 18 1 13.3966 4.8517 -4.5219 19 6 13.0060 2.7953 -4.0168 20 7 12.1265 1.9854 -3.4857 21 14 14.4526 2.1044 -4.9756 22 1 15.7214 2.5283 -4.3309 23 1 14.3754 0.6216 -4.9879 24 1 14.4113 2.6144 -6.3697 25 6 11.4614 5.9821 -2.9894 26 6 10.6422 6.4762 -2.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9336 0.9287 -0.8892 35 1 3.9330 0.9288 0.8908 36 1 5.8735 2.4196 -0.8889 37 1 5.8736 2.4188 0.8911 38 1 5.4625 4.8637 0.8930 39 1 5.4624 4.8652 -0.8869 40 1 7.7936 4.0189 -0.8869 41 1 7.7930 4.0176 0.8931 42 1 7.1094 6.5953 -0.2117 43 1 10.7004 3.8660 0.1518 44 1 12.1573 2.9452 -1.5983 45 1 12.2257 1.0261 -3.5896 46 1 11.6747 6.5780 -3.8645 47 1 10.2126 7.4621 -2.0999 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080710299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = -158.245787 kcal Electronic energy + Delta-G solvation = -26575.788299 eV Core-core repulsion = 22655.165102 eV Total energy + Delta-G solvation = -3920.623197 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.37435 -39.25798 -38.14423 -37.02552 -36.76144 -35.80282 -35.74599 -32.34559 -32.05466 -31.27871 -29.82583 -27.61096 -25.95369 -24.09665 -23.33314 -22.95486 -22.74203 -21.86257 -20.32173 -19.41378 -18.61470 -18.15838 -17.68875 -17.47615 -17.19993 -16.79781 -16.28554 -15.87300 -15.81379 -15.50718 -15.27966 -15.09710 -14.91822 -14.20310 -14.10730 -13.96879 -13.89238 -13.71901 -13.56298 -13.11457 -13.09160 -12.99516 -12.91034 -12.87783 -12.74061 -12.57895 -12.52881 -12.17153 -12.02603 -11.97875 -11.85227 -11.80145 -11.53796 -11.49935 -11.32068 -11.21410 -10.54427 -10.36312 -9.78158 -9.53813 -8.87000 -6.64185 -0.28570 0.49558 1.06942 1.35844 1.44418 1.49540 2.11391 2.22377 2.50793 2.71170 2.95942 3.53805 3.62667 3.96212 3.99191 4.00806 4.02949 4.18882 4.32339 4.32638 4.33923 4.40178 4.49443 4.51029 4.58494 4.65123 4.70269 4.79197 4.88111 4.92281 4.95092 4.95520 5.04904 5.11516 5.14926 5.23812 5.25220 5.27740 5.35148 5.44608 5.53354 5.60607 5.77362 5.93890 6.15942 6.19988 6.26881 6.49716 6.68930 6.81856 8.07825 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008678 B = 0.002487 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.905603 B =11254.426416 C =13941.926634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.116 4.116 4 C 0.055 3.945 5 O -0.407 6.407 6 C 0.061 3.939 7 C -0.114 4.114 8 C 0.118 3.882 9 N -1.110 6.110 10 S 2.730 3.270 11 O -1.002 7.002 12 O -1.002 7.002 13 C -0.796 4.796 14 C -0.020 4.020 15 C -0.206 4.206 16 C 0.110 3.890 17 C -0.467 4.467 18 H 0.090 0.910 19 C 0.035 3.965 20 N -0.793 5.793 21 Si 0.990 3.010 22 H -0.260 1.260 23 H -0.263 1.263 24 H -0.255 1.255 25 C -0.258 4.258 26 C -0.002 4.002 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.425 0.575 43 H 0.118 0.882 44 H 0.112 0.888 45 H 0.299 0.701 46 H 0.110 0.890 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 -5.653 3.414 17.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.022 4.022 5 O -0.327 6.327 6 C -0.017 4.017 7 C -0.153 4.153 8 C -0.008 4.008 9 N -0.871 5.871 10 S 2.825 3.175 11 O -0.992 6.992 12 O -0.992 6.992 13 C -0.889 4.889 14 C -0.040 4.040 15 C -0.227 4.227 16 C 0.106 3.894 17 C -0.493 4.493 18 H 0.108 0.892 19 C -0.184 4.184 20 N -0.416 5.416 21 Si 0.809 3.191 22 H -0.184 1.184 23 H -0.187 1.187 24 H -0.179 1.179 25 C -0.278 4.278 26 C -0.022 4.022 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.261 0.739 43 H 0.135 0.865 44 H 0.129 0.871 45 H 0.110 0.890 46 H 0.128 0.872 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.723 -5.401 4.239 17.157 hybrid contribution 0.773 -0.614 -1.224 1.572 sum -14.950 -6.015 3.015 16.394 Atomic orbital electron populations 1.21758 0.94918 1.02225 1.02038 1.21444 0.96664 0.95109 1.02635 1.21541 0.92767 0.98103 1.02913 1.22694 0.95719 0.82956 1.00799 1.87806 1.21513 1.27762 1.95634 1.22441 0.80961 0.96896 1.01367 1.21553 0.93122 0.96073 1.04568 1.21179 0.96516 0.80524 1.02578 1.55255 1.28535 1.14679 1.88645 1.00157 0.72394 0.71741 0.73188 1.93464 1.86959 1.30913 1.87880 1.93459 1.83991 1.75951 1.45833 1.29647 1.30307 1.08374 1.20568 1.20475 0.94049 0.92745 0.96720 1.21349 1.05189 1.01328 0.94808 1.18215 0.87945 0.91594 0.91644 1.20190 1.22410 0.93087 1.13643 0.89199 1.26974 0.98784 0.96886 0.95801 1.69829 1.31511 1.06439 1.33840 0.85120 0.77322 0.77703 0.78953 1.18406 1.18697 1.17923 1.21270 1.06541 0.98935 1.01089 1.20464 0.93844 0.96732 0.91162 0.92686 0.91872 0.92538 0.91563 0.91351 0.91465 0.91684 0.92959 0.92595 0.92603 0.92062 0.89786 0.89954 0.91704 0.90294 0.73927 0.86455 0.87051 0.89014 0.87237 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.40 5.93 30.59 0.18 -1.22 16 3 C -0.12 -1.71 5.58 30.59 0.17 -1.54 16 4 C 0.05 0.94 5.94 71.98 0.43 1.37 16 5 O -0.41 -8.94 10.34 -148.98 -1.54 -10.48 16 6 C 0.06 1.23 5.94 71.98 0.43 1.66 16 7 C -0.11 -2.35 5.73 30.60 0.18 -2.18 16 8 C 0.12 2.99 6.23 86.38 0.54 3.53 16 9 N -1.11 -30.45 6.00 -187.48 -1.12 -31.58 16 10 S 2.73 99.35 5.73 -56.49 -0.32 99.03 16 11 O -1.00 -40.09 17.26 -128.00 -2.21 -42.30 16 12 O -1.00 -40.77 16.72 -128.00 -2.14 -42.91 16 13 C -0.80 -34.10 5.97 22.46 0.13 -33.96 16 14 C -0.02 -0.91 9.49 22.22 0.21 -0.70 16 15 C -0.21 -10.42 8.70 22.73 0.20 -10.22 16 16 C 0.11 5.64 5.57 -21.29 -0.12 5.52 16 17 C -0.47 -23.16 9.05 23.46 0.21 -22.95 16 18 H 0.09 4.23 7.91 -2.91 -0.02 4.20 16 19 C 0.04 1.61 5.14 85.26 0.44 2.05 16 20 N -0.79 -37.40 10.95 21.83 0.24 -37.17 16 21 Si 0.99 34.19 29.60 68.60 2.03 36.22 16 22 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 23 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 24 H -0.26 -8.51 7.11 99.48 0.71 -7.81 16 25 C -0.26 -12.29 9.80 22.73 0.22 -12.07 16 26 C 0.00 -0.10 9.49 22.22 0.21 0.11 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 2.00 7.74 -2.39 -0.02 1.99 16 42 H 0.42 9.38 8.65 -96.75 -0.84 8.54 16 43 H 0.12 4.88 7.59 -2.91 -0.02 4.86 16 44 H 0.11 5.74 6.16 -2.91 -0.02 5.72 16 45 H 0.30 12.50 8.30 -92.71 -0.77 11.73 16 46 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 47 H 0.13 4.87 7.60 -2.91 -0.02 4.85 16 Total: -1.00 -63.08 402.38 -0.81 -63.89 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: 0.12 Total: 36.75 kcal Atomic # 6 Polarization: -75.59 SS G_CDS: 4.14 Total: -71.44 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -0.89 Total: -68.74 kcal Atomic # 8 Polarization: -89.81 SS G_CDS: -5.89 Total: -95.70 kcal Atomic # 14 Polarization: 34.19 SS G_CDS: 2.03 Total: 36.22 kcal Atomic # 16 Polarization: 99.35 SS G_CDS: -0.32 Total: 99.03 kcal Total: -63.08 -0.81 -63.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080710299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.358 kcal (2) G-P(sol) polarization free energy of solvation -63.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds