Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33318 * 126.17604 * 2 1 4 4 C 1.31636 * 108.95587 * 179.97438 * 3 2 1 5 5 C 1.47710 * 125.54180 * 179.97438 * 4 3 2 6 6 C 1.39640 * 120.14984 * 179.75112 * 5 4 3 7 7 C 1.37940 * 119.84333 * 179.72555 * 6 5 4 8 8 C 1.38374 * 120.14987 * 0.55115 * 7 6 5 9 9 C 1.38366 * 120.30629 * 359.72559 * 8 7 6 10 10 C 1.37937 * 120.15319 * 359.97438 * 9 8 7 11 11 O 1.34200 * 108.91700 * 359.75681 * 4 3 2 12 12 C 1.35401 * 107.59984 * 0.39158 * 11 4 3 13 13 C 1.46575 * 126.56415 * 179.87828 * 12 11 4 14 14 O 1.21709 * 120.00386 * 172.77751 * 13 12 11 15 15 N 1.34782 * 120.00124 * 352.77621 * 13 12 11 16 16 C 1.46962 * 120.59052 * 4.59273 * 15 13 12 17 17 C 1.53369 * 108.63652 * 235.20449 * 16 15 13 18 18 N 1.46963 * 108.63328 * 310.58016 * 17 16 15 19 19 C 1.36934 * 120.59376 * 235.20203 * 18 17 16 20 20 H 1.07995 * 120.00469 * 31.69286 * 19 18 17 21 21 C 1.38816 * 120.00164 * 211.97424 * 19 18 17 22 22 N 1.31620 * 119.99886 * 9.69155 * 21 19 18 23 23 Si 1.86804 * 120.00182 * 189.69995 * 21 19 18 24 24 H 1.48502 * 109.46946 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47394 * 119.99533 * 23 21 19 26 26 H 1.48495 * 109.46895 * 239.99714 * 23 21 19 27 27 C 1.46972 * 118.81603 * 55.47654 * 18 17 16 28 28 C 1.46963 * 120.59415 * 184.57241 * 15 13 12 29 29 H 1.08996 * 109.47144 * 270.00216 * 1 2 3 30 30 H 1.09007 * 109.46737 * 30.00317 * 1 2 3 31 31 H 1.08996 * 109.47267 * 149.99872 * 1 2 3 32 32 H 1.07996 * 120.07519 * 0.02562 * 6 5 4 33 33 H 1.07999 * 119.92359 * 180.27357 * 7 6 5 34 34 H 1.08006 * 119.84569 * 179.74084 * 8 7 6 35 35 H 1.08002 * 119.92688 * 180.02562 * 9 8 7 36 36 H 1.08001 * 120.08251 * 180.02562 * 10 9 8 37 37 H 1.08998 * 109.60470 * 115.46295 * 16 15 13 38 38 H 1.08998 * 109.75437 * 355.03485 * 16 15 13 39 39 H 1.08991 * 109.61376 * 190.83166 * 17 16 15 40 40 H 1.09005 * 109.61010 * 70.32108 * 17 16 15 41 41 H 0.97006 * 119.99794 * 179.97438 * 22 21 19 42 42 H 1.08998 * 109.60892 * 64.26303 * 27 18 17 43 43 H 1.08996 * 109.60980 * 184.77578 * 27 18 17 44 44 H 1.08996 * 109.60928 * 244.53729 * 28 15 13 45 45 H 1.09002 * 109.61165 * 5.05245 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2939 1.0762 0.0000 4 6 3.5513 0.6864 0.0006 5 6 4.7272 1.5803 0.0002 6 6 6.0163 1.0434 0.0061 7 6 7.1100 1.8839 0.0000 8 6 6.9319 3.2562 -0.0004 9 6 5.6574 3.7949 -0.0005 10 6 4.5549 2.9660 -0.0006 11 8 3.5910 -0.6549 0.0063 12 6 2.3131 -1.1024 0.0006 13 6 1.8780 -2.5021 0.0012 14 8 0.6982 -2.7727 0.1282 15 7 2.7845 -3.4897 -0.1387 16 6 4.2211 -3.1842 -0.1921 17 6 4.8020 -3.7833 -1.4788 18 7 4.3716 -5.1848 -1.5803 19 6 5.2926 -6.1881 -1.7225 20 1 6.2706 -6.0909 -1.2750 21 6 4.9711 -7.3279 -2.4469 22 7 3.8617 -7.3671 -3.1540 23 14 6.1130 -8.8060 -2.4178 24 1 7.2844 -8.5097 -1.5545 25 1 5.3854 -9.9831 -1.8789 26 1 6.5771 -9.1000 -3.7974 27 6 2.9347 -5.4898 -1.5326 28 6 2.3541 -4.8912 -0.2402 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8899 -0.5138 32 1 6.1565 -0.0274 0.0105 33 1 8.1075 1.4701 0.0001 34 1 7.7918 3.9097 -0.0010 35 1 5.5256 4.8668 -0.0012 36 1 3.5606 3.3878 -0.0011 37 1 4.7202 -3.6212 0.6728 38 1 4.3683 -2.1042 -0.1924 39 1 5.8904 -3.7364 -1.4453 40 1 4.4357 -3.2248 -2.3403 41 1 3.6373 -8.1634 -3.6604 42 1 2.4385 -5.0500 -2.3978 43 1 2.7898 -6.5701 -1.5347 44 1 2.7204 -5.4497 0.6211 45 1 1.2656 -4.9381 -0.2738 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081422354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = 57.603530 kcal Electronic energy + Delta-G solvation = -29563.005006 eV Core-core repulsion = 25548.590538 eV Total energy + Delta-G solvation = -4014.414468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.47618 -39.59128 -39.22971 -37.02803 -35.46955 -33.90615 -32.94379 -31.34022 -31.25836 -30.74408 -30.08661 -28.05957 -26.71414 -24.73105 -23.58089 -23.25821 -22.90546 -21.60799 -21.45539 -20.50077 -19.31856 -17.77736 -17.42315 -17.02445 -16.41671 -16.17433 -15.70667 -15.42988 -14.97792 -14.86460 -14.61401 -14.10312 -13.80629 -13.79640 -13.60873 -13.49603 -13.34599 -13.29555 -13.17745 -12.95815 -12.51670 -12.24406 -11.81567 -11.74327 -11.45788 -11.24540 -11.22000 -10.97665 -10.83157 -10.70909 -10.45603 -10.29548 -10.05716 -9.97000 -9.81536 -9.73979 -9.32265 -8.67185 -8.54446 -8.24174 -6.72831 -5.89221 -3.40858 0.21760 1.04678 1.26251 2.22369 2.45766 3.17942 3.30200 3.31299 3.38313 3.39959 3.50694 3.65717 4.38719 4.49014 4.57743 4.65126 4.68983 4.75207 4.99760 5.06500 5.14945 5.29436 5.30769 5.47385 5.51072 5.63939 5.65669 5.69945 5.70218 5.76958 5.80270 6.02067 6.03852 6.07059 6.12903 6.16616 6.23423 6.28202 6.34173 6.46209 6.53415 6.63943 6.76682 7.18008 7.42998 7.52536 7.66825 7.70558 8.25548 8.33781 9.07833 9.67927 10.26106 11.17716 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.003189 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.188383 B = 8778.646305 C =10781.262434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.076 3.924 3 N -0.475 5.475 4 C 0.243 3.757 5 C -0.023 4.023 6 C -0.084 4.084 7 C -0.121 4.121 8 C -0.100 4.100 9 C -0.125 4.125 10 C -0.068 4.068 11 O -0.170 6.170 12 C -0.097 4.097 13 C 0.596 3.404 14 O -0.529 6.529 15 N -0.581 5.581 16 C 0.073 3.927 17 C 0.133 3.867 18 N -0.591 5.591 19 C -0.258 4.258 20 H 0.068 0.932 21 C 0.006 3.994 22 N -0.903 5.903 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.289 1.289 27 C 0.158 3.842 28 C 0.086 3.914 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.023 0.977 41 H 0.256 0.744 42 H 0.025 0.975 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 20.047 7.463 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.050 4.050 3 N -0.205 5.205 4 C 0.042 3.958 5 C -0.024 4.024 6 C -0.103 4.103 7 C -0.139 4.139 8 C -0.118 4.118 9 C -0.143 4.143 10 C -0.088 4.088 11 O -0.057 6.057 12 C -0.151 4.151 13 C 0.382 3.618 14 O -0.409 6.409 15 N -0.311 5.311 16 C -0.051 4.051 17 C 0.006 3.994 18 N -0.314 5.314 19 C -0.387 4.387 20 H 0.085 0.915 21 C -0.193 4.193 22 N -0.547 5.547 23 Si 0.737 3.263 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.216 1.216 27 C 0.032 3.968 28 C -0.036 4.036 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.043 0.957 43 H 0.124 0.876 44 H 0.084 0.916 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.583 20.278 7.413 21.649 hybrid contribution 0.952 -1.497 -0.122 1.778 sum 2.535 18.782 7.291 20.306 Atomic orbital electron populations 1.20341 0.85161 1.04184 1.03624 1.21977 0.98301 0.86232 0.98454 1.70455 0.99726 1.30933 1.19350 1.24114 0.93206 0.79840 0.98664 1.17349 0.87867 0.91020 1.06192 1.21365 0.90969 1.00972 0.97042 1.21122 0.98905 0.93412 1.00415 1.21410 0.97485 0.95358 0.97566 1.21117 0.92091 1.00102 1.00940 1.21221 1.00233 0.91018 0.96280 1.84796 1.29356 1.21882 1.69693 1.23262 0.80690 0.96563 1.14605 1.16513 0.85731 0.81204 0.78308 1.90816 1.15977 1.81575 1.52494 1.48011 1.06979 1.07443 1.68700 1.22950 0.79914 1.00785 1.01421 1.21271 0.97959 0.87312 0.92901 1.44005 1.02291 1.00118 1.84984 1.19234 0.96157 0.96440 1.26902 0.91479 1.25228 0.97770 1.00071 0.96253 1.69946 1.24865 1.28505 1.31401 0.86143 0.80194 0.82520 0.77414 1.20167 1.21433 1.21551 1.21362 0.83319 1.01600 0.90530 1.22781 1.00347 0.78527 1.01971 0.90060 0.90638 0.88713 0.84739 0.84967 0.85436 0.85089 0.84365 0.91188 0.88854 0.91327 0.95918 0.93371 0.95723 0.87566 0.91617 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.80 36.00 0.35 -0.62 16 2 C 0.08 1.17 7.15 -82.55 -0.59 0.58 16 3 N -0.48 -7.08 10.86 -7.69 -0.08 -7.17 16 4 C 0.24 3.44 7.88 -13.77 -0.11 3.33 16 5 C -0.02 -0.26 5.87 -104.98 -0.62 -0.88 16 6 C -0.08 -0.83 9.72 -39.17 -0.38 -1.21 16 7 C -0.12 -0.94 10.03 -39.64 -0.40 -1.34 16 8 C -0.10 -0.69 10.04 -39.48 -0.40 -1.08 16 9 C -0.12 -0.92 10.03 -39.64 -0.40 -1.32 16 10 C -0.07 -0.66 9.69 -39.17 -0.38 -1.04 16 11 O -0.17 -2.59 6.98 2.86 0.02 -2.57 16 12 C -0.10 -1.61 6.88 -36.82 -0.25 -1.87 16 13 C 0.60 11.07 7.66 -12.90 -0.10 10.98 16 14 O -0.53 -10.49 14.29 5.18 0.07 -10.41 16 15 N -0.58 -10.99 2.95 -173.80 -0.51 -11.50 16 16 C 0.07 1.27 6.49 -3.60 -0.02 1.25 16 17 C 0.13 2.69 6.67 -3.60 -0.02 2.67 16 18 N -0.59 -14.35 2.95 -171.77 -0.51 -14.86 16 19 C -0.26 -6.78 9.58 -15.06 -0.14 -6.92 16 20 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 21 C 0.01 0.15 5.07 -17.43 -0.09 0.07 16 22 N -0.90 -25.42 10.98 55.49 0.61 -24.81 16 23 Si 0.91 20.97 29.57 -169.99 -5.03 15.94 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 27 C 0.16 3.73 5.49 -3.36 -0.02 3.71 16 28 C 0.09 1.72 6.60 -3.37 -0.02 1.70 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 1.32 6.62 -51.93 -0.34 0.98 16 32 H 0.13 1.27 7.89 -52.49 -0.41 0.86 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.14 1.28 7.83 -52.49 -0.41 0.87 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.09 1.48 3.76 -55.19 -0.21 1.27 16 39 H 0.07 1.30 7.93 -51.93 -0.41 0.88 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.11 2.75 6.00 -51.93 -0.31 2.43 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.08 1.63 7.01 -51.93 -0.36 1.27 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -31.02 370.77 -9.24 -40.26 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.82 Total: 1.54 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -3.59 Total: 8.00 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.49 Total: -58.34 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.02 -9.24 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081422354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.862 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds