Wall clock time and date at job start Sat Apr 11 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33318 * 126.17604 * 2 1 4 4 C 1.31636 * 108.95587 * 179.97438 * 3 2 1 5 5 C 1.47710 * 125.54180 * 179.97438 * 4 3 2 6 6 C 1.39640 * 120.14984 * 179.75112 * 5 4 3 7 7 C 1.37940 * 119.84333 * 179.72555 * 6 5 4 8 8 C 1.38374 * 120.14987 * 0.55115 * 7 6 5 9 9 C 1.38366 * 120.30629 * 359.72559 * 8 7 6 10 10 C 1.37937 * 120.15319 * 359.97438 * 9 8 7 11 11 O 1.34200 * 108.91700 * 359.75681 * 4 3 2 12 12 C 1.35401 * 107.59984 * 0.39158 * 11 4 3 13 13 C 1.46575 * 126.56415 * 179.87828 * 12 11 4 14 14 O 1.21709 * 120.00386 * 172.77751 * 13 12 11 15 15 N 1.34782 * 120.00124 * 352.77621 * 13 12 11 16 16 C 1.46962 * 120.59052 * 4.59273 * 15 13 12 17 17 C 1.53369 * 108.63652 * 235.20449 * 16 15 13 18 18 N 1.46963 * 108.63328 * 310.58016 * 17 16 15 19 19 C 1.36934 * 120.59376 * 235.20203 * 18 17 16 20 20 H 1.07995 * 120.00469 * 31.69286 * 19 18 17 21 21 C 1.38816 * 120.00164 * 211.97424 * 19 18 17 22 22 N 1.31620 * 119.99886 * 9.69155 * 21 19 18 23 23 Si 1.86804 * 120.00182 * 189.69995 * 21 19 18 24 24 H 1.48502 * 109.46946 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47394 * 119.99533 * 23 21 19 26 26 H 1.48495 * 109.46895 * 239.99714 * 23 21 19 27 27 C 1.46972 * 118.81603 * 55.47654 * 18 17 16 28 28 C 1.46963 * 120.59415 * 184.57241 * 15 13 12 29 29 H 1.08996 * 109.47144 * 270.00216 * 1 2 3 30 30 H 1.09007 * 109.46737 * 30.00317 * 1 2 3 31 31 H 1.08996 * 109.47267 * 149.99872 * 1 2 3 32 32 H 1.07996 * 120.07519 * 0.02562 * 6 5 4 33 33 H 1.07999 * 119.92359 * 180.27357 * 7 6 5 34 34 H 1.08006 * 119.84569 * 179.74084 * 8 7 6 35 35 H 1.08002 * 119.92688 * 180.02562 * 9 8 7 36 36 H 1.08001 * 120.08251 * 180.02562 * 10 9 8 37 37 H 1.08998 * 109.60470 * 115.46295 * 16 15 13 38 38 H 1.08998 * 109.75437 * 355.03485 * 16 15 13 39 39 H 1.08991 * 109.61376 * 190.83166 * 17 16 15 40 40 H 1.09005 * 109.61010 * 70.32108 * 17 16 15 41 41 H 0.97006 * 119.99794 * 179.97438 * 22 21 19 42 42 H 1.08998 * 109.60892 * 64.26303 * 27 18 17 43 43 H 1.08996 * 109.60980 * 184.77578 * 27 18 17 44 44 H 1.08996 * 109.60928 * 244.53729 * 28 15 13 45 45 H 1.09002 * 109.61165 * 5.05245 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2939 1.0762 0.0000 4 6 3.5513 0.6864 0.0006 5 6 4.7272 1.5803 0.0002 6 6 6.0163 1.0434 0.0061 7 6 7.1100 1.8839 0.0000 8 6 6.9319 3.2562 -0.0004 9 6 5.6574 3.7949 -0.0005 10 6 4.5549 2.9660 -0.0006 11 8 3.5910 -0.6549 0.0063 12 6 2.3131 -1.1024 0.0006 13 6 1.8780 -2.5021 0.0012 14 8 0.6982 -2.7727 0.1282 15 7 2.7845 -3.4897 -0.1387 16 6 4.2211 -3.1842 -0.1921 17 6 4.8020 -3.7833 -1.4788 18 7 4.3716 -5.1848 -1.5803 19 6 5.2926 -6.1881 -1.7225 20 1 6.2706 -6.0909 -1.2750 21 6 4.9711 -7.3279 -2.4469 22 7 3.8617 -7.3671 -3.1540 23 14 6.1130 -8.8060 -2.4178 24 1 7.2844 -8.5097 -1.5545 25 1 5.3854 -9.9831 -1.8789 26 1 6.5771 -9.1000 -3.7974 27 6 2.9347 -5.4898 -1.5326 28 6 2.3541 -4.8912 -0.2402 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8899 -0.5138 32 1 6.1565 -0.0274 0.0105 33 1 8.1075 1.4701 0.0001 34 1 7.7918 3.9097 -0.0010 35 1 5.5256 4.8668 -0.0012 36 1 3.5606 3.3878 -0.0011 37 1 4.7202 -3.6212 0.6728 38 1 4.3683 -2.1042 -0.1924 39 1 5.8904 -3.7364 -1.4453 40 1 4.4357 -3.2248 -2.3403 41 1 3.6373 -8.1634 -3.6604 42 1 2.4385 -5.0500 -2.3978 43 1 2.7898 -6.5701 -1.5347 44 1 2.7204 -5.4497 0.6211 45 1 1.2656 -4.9381 -0.2738 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081422354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:01 Heat of formation + Delta-G solvation = 38.634950 kcal Electronic energy + Delta-G solvation = -29563.827546 eV Core-core repulsion = 25548.590538 eV Total energy + Delta-G solvation = -4015.237007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.63425 -41.03021 -39.95889 -38.65281 -36.72010 -35.60745 -33.89794 -33.14235 -32.20330 -31.97674 -31.20253 -29.46446 -28.26494 -25.99905 -25.12246 -24.71208 -23.79334 -22.94806 -22.39906 -21.82011 -20.85957 -19.12363 -18.60333 -18.21162 -18.03372 -17.21758 -17.00474 -16.77620 -16.40094 -16.16049 -15.69543 -15.52216 -15.32836 -15.09336 -15.00913 -14.81340 -14.41762 -14.40496 -14.19019 -14.09926 -13.88072 -13.43597 -13.27166 -13.09451 -12.75859 -12.53007 -12.43408 -12.38386 -12.28352 -12.12000 -12.09663 -11.99540 -11.82377 -11.57679 -11.28480 -10.74408 -10.65373 -10.03291 -9.96210 -9.35966 -8.67659 -7.90616 -5.46319 -0.77688 0.26678 0.41525 1.04888 1.41011 1.47455 1.49156 1.59434 1.78056 1.92785 2.48468 2.60174 2.82212 3.26103 3.29133 3.50111 3.53793 3.90612 3.94767 4.00934 4.11775 4.14970 4.20322 4.28253 4.36015 4.44455 4.46987 4.56747 4.57262 4.64878 4.69416 4.70915 4.78049 4.84467 4.94092 5.04892 5.09049 5.12300 5.19271 5.37304 5.38975 5.47222 5.52428 5.56900 5.62050 5.93065 6.13928 6.34446 6.37123 6.79111 7.07020 7.72656 8.28140 9.14510 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.003189 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.188383 B = 8778.646305 C =10781.262434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.085 3.915 3 N -0.491 5.491 4 C 0.261 3.739 5 C -0.057 4.057 6 C -0.093 4.093 7 C -0.123 4.123 8 C -0.087 4.087 9 C -0.122 4.122 10 C -0.074 4.074 11 O -0.175 6.175 12 C -0.132 4.132 13 C 0.598 3.402 14 O -0.547 6.547 15 N -0.590 5.590 16 C 0.086 3.914 17 C 0.133 3.867 18 N -0.608 5.608 19 C -0.265 4.265 20 H 0.075 0.925 21 C -0.048 4.048 22 N -0.938 5.938 23 Si 0.974 3.026 24 H -0.262 1.262 25 H -0.290 1.290 26 H -0.294 1.294 27 C 0.169 3.831 28 C 0.103 3.897 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.009 0.991 41 H 0.252 0.748 42 H -0.006 1.006 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 22.619 8.629 24.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.041 4.041 3 N -0.220 5.220 4 C 0.060 3.940 5 C -0.059 4.059 6 C -0.113 4.113 7 C -0.141 4.141 8 C -0.105 4.105 9 C -0.140 4.140 10 C -0.093 4.093 11 O -0.064 6.064 12 C -0.187 4.187 13 C 0.387 3.613 14 O -0.428 6.428 15 N -0.320 5.320 16 C -0.037 4.037 17 C 0.006 3.994 18 N -0.332 5.332 19 C -0.394 4.394 20 H 0.093 0.907 21 C -0.243 4.243 22 N -0.583 5.583 23 Si 0.802 3.198 24 H -0.186 1.186 25 H -0.217 1.217 26 H -0.221 1.221 27 C 0.042 3.958 28 C -0.021 4.021 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.150 0.850 33 H 0.173 0.827 34 H 0.179 0.821 35 H 0.178 0.822 36 H 0.154 0.846 37 H 0.098 0.902 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.027 0.973 41 H 0.061 0.939 42 H 0.012 0.988 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.839 22.888 8.599 24.749 hybrid contribution 0.367 -2.035 -0.496 2.127 sum 4.206 20.852 8.103 22.763 Atomic orbital electron populations 1.20410 0.83689 1.04479 1.04550 1.22410 0.99358 0.86016 0.96270 1.70526 1.00024 1.30524 1.20962 1.24846 0.94020 0.79482 0.95683 1.17565 0.87447 0.91431 1.09416 1.21499 0.91074 1.01397 0.97281 1.21456 0.99240 0.93846 0.99552 1.21867 0.98406 0.95393 0.94861 1.21481 0.91558 1.01332 0.99636 1.21359 1.01161 0.90479 0.96286 1.84679 1.28789 1.22620 1.70310 1.22838 0.81552 0.95829 1.18434 1.16655 0.85365 0.81851 0.77446 1.90790 1.16627 1.82206 1.53225 1.48025 1.07672 1.06997 1.69350 1.22858 0.78993 1.01891 0.99987 1.21385 0.99000 0.85166 0.93826 1.44246 1.02179 1.01522 1.85219 1.19597 0.96619 0.96999 1.26225 0.90702 1.26001 0.99223 1.02789 0.96303 1.70119 1.26669 1.28951 1.32572 0.85108 0.78666 0.78987 0.77061 1.18634 1.21712 1.22065 1.21062 0.83477 0.99958 0.91254 1.22423 1.00193 0.79417 1.00039 0.88689 0.88614 0.90023 0.84969 0.82697 0.82121 0.82241 0.84595 0.90155 0.86938 0.89827 0.97325 0.93887 0.98771 0.90165 0.90789 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.87 9.80 71.23 0.70 -1.17 16 2 C 0.09 2.61 7.15 41.94 0.30 2.91 16 3 N -0.49 -14.35 10.86 -292.24 -3.17 -17.53 16 4 C 0.26 7.23 7.88 87.23 0.69 7.92 16 5 C -0.06 -1.24 5.87 -20.10 -0.12 -1.36 16 6 C -0.09 -1.68 9.72 22.54 0.22 -1.46 16 7 C -0.12 -1.53 10.03 22.23 0.22 -1.30 16 8 C -0.09 -0.83 10.04 22.33 0.22 -0.61 16 9 C -0.12 -1.38 10.03 22.23 0.22 -1.15 16 10 C -0.07 -1.27 9.69 22.54 0.22 -1.06 16 11 O -0.18 -5.32 6.98 -12.70 -0.09 -5.41 16 12 C -0.13 -4.45 6.88 24.06 0.17 -4.28 16 13 C 0.60 22.56 7.66 86.42 0.66 23.22 16 14 O -0.55 -22.11 14.29 -4.38 -0.06 -22.17 16 15 N -0.59 -22.55 2.95 -821.98 -2.42 -24.97 16 16 C 0.09 2.95 6.49 86.41 0.56 3.51 16 17 C 0.13 5.38 6.67 86.41 0.58 5.96 16 18 N -0.61 -30.07 2.95 -697.35 -2.06 -32.13 16 19 C -0.26 -13.98 9.58 84.03 0.81 -13.17 16 20 H 0.08 3.77 7.85 -2.91 -0.02 3.75 16 21 C -0.05 -2.58 5.07 84.86 0.43 -2.15 16 22 N -0.94 -54.49 10.98 21.65 0.24 -54.25 16 23 Si 0.97 43.48 29.57 68.60 2.03 45.51 16 24 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 25 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 27 C 0.17 8.30 5.49 86.56 0.48 8.78 16 28 C 0.10 4.18 6.60 86.56 0.57 4.76 16 29 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.08 2.30 6.62 -2.39 -0.02 2.28 16 32 H 0.13 2.35 7.89 -2.91 -0.02 2.33 16 33 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 35 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 36 H 0.14 2.34 7.83 -2.91 -0.02 2.32 16 37 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.11 3.50 3.76 -54.09 -0.20 3.30 16 39 H 0.08 3.10 7.93 -2.39 -0.02 3.08 16 40 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 41 H 0.25 14.18 8.31 -92.70 -0.77 13.40 16 42 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 43 H 0.08 4.36 6.00 -2.39 -0.01 4.34 16 44 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 45 H 0.09 3.46 7.01 -2.39 -0.02 3.44 16 Total: -1.00 -68.59 370.77 2.20 -66.39 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.83 Total: 15.23 kcal Atomic # 6 Polarization: 22.41 SS G_CDS: 6.92 Total: 29.33 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -7.42 Total: -128.88 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.15 Total: -27.58 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -68.59 2.20 -66.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081422354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.024 kcal (2) G-P(sol) polarization free energy of solvation -68.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds