Wall clock time and date at job start Sat Apr 11 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30817 * 119.22910 * 2 1 4 4 C 1.33795 * 121.73453 * 180.02562 * 3 2 1 5 5 C 1.40579 * 120.75174 * 180.02562 * 4 3 2 6 6 C 1.36022 * 119.88781 * 179.65221 * 5 4 3 7 7 C 1.39822 * 121.03427 * 0.60156 * 6 5 4 8 8 O 1.35897 * 119.64493 * 179.68514 * 7 6 5 9 9 C 1.36605 * 120.71900 * 359.41653 * 7 6 5 10 10 C 1.40476 * 119.58592 * 0.26713 * 9 7 6 11 11 C 1.40516 * 121.18597 * 180.02562 * 10 9 7 12 12 C 1.39042 * 117.96932 * 179.91742 * 11 10 9 13 13 C 1.47758 * 120.26910 * 180.02562 * 12 11 10 14 14 O 1.21567 * 119.99669 * 225.57554 * 13 12 11 15 15 N 1.34770 * 120.00177 * 45.57380 * 13 12 11 16 16 C 1.46968 * 120.59699 * 4.70389 * 15 13 12 17 17 C 1.53808 * 108.39677 * 124.75545 * 16 15 13 18 18 N 1.46964 * 108.57974 * 49.64227 * 17 16 15 19 19 C 1.36945 * 120.59432 * 124.62243 * 18 17 16 20 20 H 1.07997 * 119.99636 * 191.63892 * 19 18 17 21 21 C 1.38803 * 119.99961 * 11.63915 * 19 18 17 22 22 N 1.31621 * 120.00292 * 224.76502 * 21 19 18 23 23 Si 1.86801 * 120.00018 * 44.76127 * 21 19 18 24 24 H 1.48505 * 109.47123 * 95.95465 * 23 21 19 25 25 H 1.48499 * 109.47517 * 215.95065 * 23 21 19 26 26 H 1.48501 * 109.47512 * 335.95574 * 23 21 19 27 27 C 1.46968 * 118.81276 * 304.64763 * 18 17 16 28 28 C 1.46965 * 120.59481 * 184.98849 * 15 13 12 29 29 H 1.09010 * 109.47126 * 86.69435 * 1 2 3 30 30 H 1.08999 * 109.47456 * 206.69497 * 1 2 3 31 31 H 1.09003 * 109.47076 * 326.69788 * 1 2 3 32 32 H 1.08008 * 120.05246 * 359.97077 * 5 4 3 33 33 H 1.07999 * 119.48479 * 180.30996 * 6 5 4 34 34 H 0.96698 * 113.99904 * 269.73288 * 8 7 6 35 35 H 1.08001 * 120.20867 * 180.25621 * 9 7 6 36 36 H 1.08001 * 121.01695 * 359.95904 * 11 10 9 37 37 H 1.08991 * 109.61506 * 244.54078 * 16 15 13 38 38 H 1.09004 * 109.60361 * 5.05347 * 16 15 13 39 39 H 1.09002 * 109.74892 * 289.85222 * 17 16 15 40 40 H 1.08996 * 109.53118 * 169.30768 * 17 16 15 41 41 H 0.96996 * 120.00364 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.60681 * 295.47923 * 27 18 17 43 43 H 1.08999 * 109.75043 * 175.05458 * 27 18 17 44 44 H 1.09005 * 109.61045 * 354.94705 * 28 15 13 45 45 H 1.08995 * 109.61580 * 115.45781 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4824 1.2001 -0.0005 5 6 4.1477 2.4385 0.0000 6 6 5.5074 2.4775 0.0067 7 6 6.2623 1.3006 0.0004 8 8 7.6194 1.3725 0.0008 9 6 5.6506 0.0791 -0.0006 10 6 4.2477 0.0060 -0.0010 11 6 3.5837 -1.2323 -0.0014 12 6 2.1933 -1.2267 0.0000 13 6 1.4433 -2.4998 0.0001 14 8 0.4991 -2.6490 -0.7509 15 7 1.8060 -3.4955 0.8328 16 6 2.8784 -3.2940 1.8173 17 6 2.3264 -3.6322 3.2125 18 7 1.6607 -4.9408 3.1481 19 6 2.0299 -5.9529 3.9936 20 1 1.6750 -6.9580 3.8199 21 6 2.8601 -5.6868 5.0737 22 7 3.8689 -6.4887 5.3416 23 14 2.5458 -4.1907 6.1470 24 1 1.7519 -4.5923 7.3360 25 1 3.8424 -3.6169 6.5885 26 1 1.7933 -3.1732 5.3700 27 6 0.5922 -5.1442 2.1598 28 6 1.1404 -4.8042 0.7684 29 1 -0.3634 0.0593 -1.0260 30 1 -0.3634 -0.9181 0.4617 31 1 -0.3633 0.8589 0.5643 32 1 3.5802 3.3574 0.0004 33 1 6.0118 3.4324 0.0121 34 1 8.0123 1.3939 -0.8825 35 1 6.2418 -0.8247 -0.0013 36 1 4.1364 -2.1602 -0.0022 37 1 3.7171 -3.9498 1.5840 38 1 3.2059 -2.2546 1.7938 39 1 1.6085 -2.8713 3.5188 40 1 3.1469 -3.6739 3.9287 41 1 4.4489 -6.3030 6.0965 42 1 -0.2492 -4.4909 2.3911 43 1 0.2646 -6.1836 2.1801 44 1 0.3198 -4.7625 0.0520 45 1 1.8582 -5.5651 0.4621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527764661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:15 Heat of formation + Delta-G solvation = 29.017660 kcal Electronic energy + Delta-G solvation = -29886.151385 eV Core-core repulsion = 25870.497341 eV Total energy + Delta-G solvation = -4015.654044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.39645 -39.89218 -38.65518 -37.17313 -35.96913 -34.41624 -33.61791 -31.86908 -31.56426 -30.84982 -30.07553 -27.65935 -27.22642 -25.05270 -23.62405 -23.35514 -22.80530 -22.33450 -21.23174 -19.59341 -18.69852 -18.35482 -17.38580 -16.72611 -16.45803 -16.12500 -15.65559 -15.41894 -15.00942 -14.79841 -14.62140 -14.44817 -14.27944 -14.03995 -13.76363 -13.63387 -13.36126 -13.07456 -12.88948 -12.79736 -12.63313 -12.32782 -12.22471 -12.11044 -11.97099 -11.29964 -11.19208 -11.01019 -10.91319 -10.69926 -10.45138 -10.40118 -10.33311 -10.04843 -9.52640 -9.46117 -8.90285 -8.83222 -8.41881 -8.26738 -7.28179 -6.17997 -3.20734 -0.02286 0.36601 1.59853 2.28623 2.85384 3.14623 3.32153 3.45178 3.52476 3.65623 3.85432 3.94718 4.25101 4.32654 4.45881 4.46162 4.68153 4.70733 4.73108 4.78477 5.10075 5.13008 5.33309 5.44016 5.49127 5.51695 5.53092 5.58840 5.62553 5.67523 5.72199 5.80334 5.89937 5.95607 5.99357 6.00033 6.02150 6.13524 6.18908 6.39514 6.41962 6.49178 6.66309 6.78299 7.26027 7.54993 7.69368 7.72653 8.10796 8.21979 8.78035 9.61644 9.98096 10.93340 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.003829 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.962876 B = 7310.932179 C = 8756.800109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.206 3.794 3 N -0.478 5.478 4 C 0.139 3.861 5 C -0.081 4.081 6 C -0.116 4.116 7 C 0.102 3.898 8 O -0.496 6.496 9 C -0.113 4.113 10 C -0.101 4.101 11 C -0.018 4.018 12 C -0.169 4.169 13 C 0.559 3.441 14 O -0.539 6.539 15 N -0.588 5.588 16 C 0.077 3.923 17 C 0.136 3.864 18 N -0.599 5.599 19 C -0.282 4.282 20 H 0.089 0.911 21 C 0.041 3.959 22 N -0.861 5.861 23 Si 0.814 3.186 24 H -0.293 1.293 25 H -0.292 1.292 26 H -0.261 1.261 27 C 0.137 3.863 28 C 0.096 3.904 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.391 0.609 35 H 0.140 0.860 36 H 0.150 0.850 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.031 0.969 40 H 0.077 0.923 41 H 0.263 0.737 42 H 0.027 0.973 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.991 15.636 -13.924 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.053 3.947 3 N -0.186 5.186 4 C 0.017 3.983 5 C -0.100 4.100 6 C -0.136 4.136 7 C 0.057 3.943 8 O -0.306 6.306 9 C -0.132 4.132 10 C -0.103 4.103 11 C -0.044 4.044 12 C -0.174 4.174 13 C 0.346 3.654 14 O -0.418 6.418 15 N -0.320 5.320 16 C -0.048 4.048 17 C 0.009 3.991 18 N -0.322 5.322 19 C -0.408 4.408 20 H 0.107 0.893 21 C -0.161 4.161 22 N -0.500 5.500 23 Si 0.640 3.360 24 H -0.222 1.222 25 H -0.219 1.219 26 H -0.185 1.185 27 C 0.010 3.990 28 C -0.028 4.028 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.247 0.753 35 H 0.158 0.842 36 H 0.168 0.832 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.187 16.262 -13.582 21.300 hybrid contribution 0.671 0.012 0.554 0.870 sum 2.857 16.275 -13.027 21.041 Atomic orbital electron populations 1.20851 0.87605 1.03820 1.03986 1.21459 0.97412 0.86247 0.89581 1.67829 1.08115 1.28026 1.14678 1.18981 0.89244 0.92877 0.97157 1.20690 0.93471 0.96612 0.99242 1.21222 0.93876 0.98663 0.99858 1.18098 0.83222 0.91987 1.00976 1.84865 1.15897 1.96254 1.33634 1.21281 0.92924 0.98459 1.00542 1.18549 0.94107 0.93707 1.03960 1.22050 0.93092 0.97855 0.91428 1.20859 0.94333 0.95481 1.06749 1.17984 0.83679 0.82893 0.80809 1.90758 1.28362 1.81378 1.41311 1.47989 1.36974 1.12623 1.34403 1.22893 0.89994 1.00975 0.90893 1.21663 0.96655 0.87709 0.93071 1.44345 1.38565 1.10525 1.38745 1.18761 1.27497 0.88433 1.06111 0.89288 1.24810 0.95743 0.95976 0.99526 1.70301 1.11359 1.40240 1.28074 0.87997 0.78457 0.85951 0.83572 1.22151 1.21922 1.18532 1.21264 0.90183 1.00195 0.87367 1.22306 0.97795 0.82601 1.00084 0.89341 0.89880 0.90381 0.84043 0.84536 0.75270 0.84205 0.83223 0.90414 0.90560 0.95078 0.90485 0.92731 0.95458 0.90545 0.89330 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.22 36.00 0.33 -1.01 16 2 C 0.21 2.94 6.81 -82.15 -0.56 2.38 16 3 N -0.48 -6.69 10.20 -6.92 -0.07 -6.76 16 4 C 0.14 1.78 6.61 -84.76 -0.56 1.22 16 5 C -0.08 -0.83 9.96 -39.49 -0.39 -1.22 16 6 C -0.12 -1.01 9.87 -39.79 -0.39 -1.41 16 7 C 0.10 0.96 6.65 -39.58 -0.26 0.69 16 8 O -0.50 -4.01 13.47 -19.42 -0.26 -4.27 16 9 C -0.11 -1.16 9.69 -39.33 -0.38 -1.54 16 10 C -0.10 -1.23 5.74 -106.82 -0.61 -1.84 16 11 C -0.02 -0.23 7.29 -38.43 -0.28 -0.51 16 12 C -0.17 -2.45 4.99 -104.83 -0.52 -2.97 16 13 C 0.56 9.05 6.42 -12.37 -0.08 8.97 16 14 O -0.54 -9.68 14.73 5.31 0.08 -9.61 16 15 N -0.59 -9.71 2.94 -173.36 -0.51 -10.22 16 16 C 0.08 1.28 5.37 -3.37 -0.02 1.26 16 17 C 0.14 2.82 4.59 -3.37 -0.02 2.80 16 18 N -0.60 -13.47 2.90 -171.77 -0.50 -13.97 16 19 C -0.28 -7.42 9.91 -15.06 -0.15 -7.57 16 20 H 0.09 2.46 7.95 -52.49 -0.42 2.04 16 21 C 0.04 1.13 4.83 -17.43 -0.08 1.04 16 22 N -0.86 -24.77 13.97 55.49 0.78 -23.99 16 23 Si 0.81 20.14 26.11 -169.99 -4.44 15.70 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.26 -6.18 5.13 56.52 0.29 -5.89 16 27 C 0.14 2.56 6.67 -3.60 -0.02 2.53 16 28 C 0.10 1.57 6.60 -3.60 -0.02 1.55 16 29 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 30 H 0.08 1.15 6.36 -51.93 -0.33 0.82 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 33 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.39 1.19 9.06 45.56 0.41 1.60 16 35 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.15 1.65 7.08 -52.49 -0.37 1.28 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.13 4.84 -51.93 -0.25 0.88 16 39 H 0.03 0.66 7.19 -51.93 -0.37 0.29 16 40 H 0.08 1.73 4.46 -51.93 -0.23 1.50 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 1.37 7.86 -51.93 -0.41 0.96 16 44 H 0.09 1.39 6.99 -51.93 -0.36 1.03 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 359.86 15.07 5.42 5.42 Total: -1.00 -32.66 359.86 -8.49 -41.15 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.96 Total: 2.14 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -4.03 Total: 4.40 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.30 Total: -54.94 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.18 Total: -13.88 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.44 Total: 15.70 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.66 -8.49 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527764661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.172 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds