Wall clock time and date at job start Sat Apr 11 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30817 * 119.22910 * 2 1 4 4 C 1.33795 * 121.73453 * 180.02562 * 3 2 1 5 5 C 1.40579 * 120.75174 * 180.02562 * 4 3 2 6 6 C 1.36022 * 119.88781 * 179.65221 * 5 4 3 7 7 C 1.39822 * 121.03427 * 0.60156 * 6 5 4 8 8 O 1.35897 * 119.64493 * 179.68514 * 7 6 5 9 9 C 1.36605 * 120.71900 * 359.41653 * 7 6 5 10 10 C 1.40476 * 119.58592 * 0.26713 * 9 7 6 11 11 C 1.40516 * 121.18597 * 180.02562 * 10 9 7 12 12 C 1.39042 * 117.96932 * 179.91742 * 11 10 9 13 13 C 1.47758 * 120.26910 * 180.02562 * 12 11 10 14 14 O 1.21567 * 119.99669 * 225.57554 * 13 12 11 15 15 N 1.34770 * 120.00177 * 45.57380 * 13 12 11 16 16 C 1.46968 * 120.59699 * 4.70389 * 15 13 12 17 17 C 1.53808 * 108.39677 * 124.75545 * 16 15 13 18 18 N 1.46964 * 108.57974 * 49.64227 * 17 16 15 19 19 C 1.36945 * 120.59432 * 124.62243 * 18 17 16 20 20 H 1.07997 * 119.99636 * 191.63892 * 19 18 17 21 21 C 1.38803 * 119.99961 * 11.63915 * 19 18 17 22 22 N 1.31621 * 120.00292 * 224.76502 * 21 19 18 23 23 Si 1.86801 * 120.00018 * 44.76127 * 21 19 18 24 24 H 1.48505 * 109.47123 * 95.95465 * 23 21 19 25 25 H 1.48499 * 109.47517 * 215.95065 * 23 21 19 26 26 H 1.48501 * 109.47512 * 335.95574 * 23 21 19 27 27 C 1.46968 * 118.81276 * 304.64763 * 18 17 16 28 28 C 1.46965 * 120.59481 * 184.98849 * 15 13 12 29 29 H 1.09010 * 109.47126 * 86.69435 * 1 2 3 30 30 H 1.08999 * 109.47456 * 206.69497 * 1 2 3 31 31 H 1.09003 * 109.47076 * 326.69788 * 1 2 3 32 32 H 1.08008 * 120.05246 * 359.97077 * 5 4 3 33 33 H 1.07999 * 119.48479 * 180.30996 * 6 5 4 34 34 H 0.96698 * 113.99904 * 269.73288 * 8 7 6 35 35 H 1.08001 * 120.20867 * 180.25621 * 9 7 6 36 36 H 1.08001 * 121.01695 * 359.95904 * 11 10 9 37 37 H 1.08991 * 109.61506 * 244.54078 * 16 15 13 38 38 H 1.09004 * 109.60361 * 5.05347 * 16 15 13 39 39 H 1.09002 * 109.74892 * 289.85222 * 17 16 15 40 40 H 1.08996 * 109.53118 * 169.30768 * 17 16 15 41 41 H 0.96996 * 120.00364 * 180.02562 * 22 21 19 42 42 H 1.09004 * 109.60681 * 295.47923 * 27 18 17 43 43 H 1.08999 * 109.75043 * 175.05458 * 27 18 17 44 44 H 1.09005 * 109.61045 * 354.94705 * 28 15 13 45 45 H 1.08995 * 109.61580 * 115.45781 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4824 1.2001 -0.0005 5 6 4.1477 2.4385 0.0000 6 6 5.5074 2.4775 0.0067 7 6 6.2623 1.3006 0.0004 8 8 7.6194 1.3725 0.0008 9 6 5.6506 0.0791 -0.0006 10 6 4.2477 0.0060 -0.0010 11 6 3.5837 -1.2323 -0.0014 12 6 2.1933 -1.2267 0.0000 13 6 1.4433 -2.4998 0.0001 14 8 0.4991 -2.6490 -0.7509 15 7 1.8060 -3.4955 0.8328 16 6 2.8784 -3.2940 1.8173 17 6 2.3264 -3.6322 3.2125 18 7 1.6607 -4.9408 3.1481 19 6 2.0299 -5.9529 3.9936 20 1 1.6750 -6.9580 3.8199 21 6 2.8601 -5.6868 5.0737 22 7 3.8689 -6.4887 5.3416 23 14 2.5458 -4.1907 6.1470 24 1 1.7519 -4.5923 7.3360 25 1 3.8424 -3.6169 6.5885 26 1 1.7933 -3.1732 5.3700 27 6 0.5922 -5.1442 2.1598 28 6 1.1404 -4.8042 0.7684 29 1 -0.3634 0.0593 -1.0260 30 1 -0.3634 -0.9181 0.4617 31 1 -0.3633 0.8589 0.5643 32 1 3.5802 3.3574 0.0004 33 1 6.0118 3.4324 0.0121 34 1 8.0123 1.3939 -0.8825 35 1 6.2418 -0.8247 -0.0013 36 1 4.1364 -2.1602 -0.0022 37 1 3.7171 -3.9498 1.5840 38 1 3.2059 -2.2546 1.7938 39 1 1.6085 -2.8713 3.5188 40 1 3.1469 -3.6739 3.9287 41 1 4.4489 -6.3030 6.0965 42 1 -0.2492 -4.4909 2.3911 43 1 0.2646 -6.1836 2.1801 44 1 0.3198 -4.7625 0.0520 45 1 1.8582 -5.5651 0.4621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527764661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:14 Heat of formation + Delta-G solvation = 6.391621 kcal Electronic energy + Delta-G solvation = -29887.132524 eV Core-core repulsion = 25870.497341 eV Total energy + Delta-G solvation = -4016.635183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36307 -41.02211 -39.52903 -38.62712 -36.78099 -35.86832 -34.79169 -33.52532 -32.66566 -32.21100 -31.08577 -28.99729 -28.35232 -26.26682 -25.05951 -24.90792 -23.64254 -23.28296 -22.62059 -20.82901 -19.77178 -19.23916 -18.81943 -17.80674 -17.66102 -17.48114 -16.91973 -16.52776 -16.36077 -16.05389 -15.66974 -15.66470 -15.52784 -15.28435 -15.09324 -14.76361 -14.50796 -14.36544 -14.16381 -13.97180 -13.94954 -13.63001 -13.54215 -13.16084 -13.06764 -12.86313 -12.60468 -12.28325 -12.15452 -12.07519 -12.01383 -11.68788 -11.61285 -11.35774 -11.21403 -10.68017 -10.59764 -9.97242 -9.75725 -9.23596 -9.09113 -8.25294 -5.24664 -0.90066 -0.52658 0.73821 1.31514 1.32765 1.46496 1.50495 1.69595 1.96093 2.42302 2.82059 2.83834 2.98535 3.15864 3.26846 3.33903 3.44305 3.50545 3.81305 3.84951 4.00938 4.06201 4.07699 4.27498 4.30341 4.33126 4.47963 4.51451 4.53796 4.60482 4.66491 4.69247 4.70465 4.78734 4.81258 4.91259 4.93222 5.02787 5.12946 5.14582 5.25918 5.36346 5.40648 5.60961 5.77891 6.03503 6.26942 6.71461 6.82910 6.82935 6.94900 7.62735 8.02181 8.88765 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.003829 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.962876 B = 7310.932179 C = 8756.800109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.190 3.810 3 N -0.488 5.488 4 C 0.119 3.881 5 C -0.090 4.090 6 C -0.103 4.103 7 C 0.111 3.889 8 O -0.503 6.503 9 C -0.123 4.123 10 C -0.110 4.110 11 C -0.011 4.011 12 C -0.191 4.191 13 C 0.567 3.433 14 O -0.559 6.559 15 N -0.592 5.592 16 C 0.092 3.908 17 C 0.131 3.869 18 N -0.611 5.611 19 C -0.270 4.270 20 H 0.067 0.933 21 C -0.003 4.003 22 N -0.905 5.905 23 Si 0.871 3.129 24 H -0.307 1.307 25 H -0.294 1.294 26 H -0.246 1.246 27 C 0.135 3.865 28 C 0.105 3.895 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.156 0.844 33 H 0.166 0.834 34 H 0.415 0.585 35 H 0.155 0.845 36 H 0.165 0.835 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.029 0.971 40 H 0.060 0.940 41 H 0.263 0.737 42 H 0.030 0.970 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.220 18.090 -15.063 23.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.037 3.963 3 N -0.197 5.197 4 C -0.003 4.003 5 C -0.109 4.109 6 C -0.123 4.123 7 C 0.067 3.933 8 O -0.318 6.318 9 C -0.142 4.142 10 C -0.112 4.112 11 C -0.037 4.037 12 C -0.196 4.196 13 C 0.355 3.645 14 O -0.439 6.439 15 N -0.324 5.324 16 C -0.032 4.032 17 C 0.004 3.996 18 N -0.335 5.335 19 C -0.397 4.397 20 H 0.085 0.915 21 C -0.202 4.202 22 N -0.548 5.548 23 Si 0.698 3.302 24 H -0.237 1.237 25 H -0.220 1.220 26 H -0.170 1.170 27 C 0.009 3.991 28 C -0.018 4.018 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.174 0.826 33 H 0.183 0.817 34 H 0.275 0.725 35 H 0.172 0.828 36 H 0.182 0.818 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.098 0.902 44 H 0.117 0.883 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.405 18.761 -14.765 24.116 hybrid contribution 0.396 -0.674 0.816 1.130 sum 3.800 18.087 -13.949 23.155 Atomic orbital electron populations 1.20794 0.87207 1.03467 1.04234 1.21592 0.97922 0.86411 0.90373 1.67831 1.08983 1.27823 1.15075 1.19405 0.89059 0.94219 0.97580 1.20902 0.94195 0.96234 0.99534 1.21540 0.93321 0.99788 0.97616 1.18211 0.83933 0.91877 0.99320 1.84809 1.14987 1.96136 1.35819 1.21445 0.92172 0.99675 1.00911 1.18674 0.94998 0.93262 1.04229 1.22233 0.92461 0.98830 0.90217 1.20717 0.95010 0.94536 1.09384 1.18175 0.83204 0.83086 0.80014 1.90740 1.29347 1.81774 1.42067 1.47990 1.37050 1.12735 1.34583 1.22671 0.89736 1.02347 0.88440 1.21683 0.95918 0.86693 0.95273 1.44465 1.39922 1.10450 1.38654 1.18773 1.26080 0.88605 1.06289 0.91538 1.25193 0.95972 0.98337 1.00706 1.70344 1.12764 1.42637 1.29024 0.87108 0.77946 0.83632 0.81492 1.23655 1.22048 1.16991 1.21400 0.89409 1.00642 0.87624 1.22149 0.98208 0.82925 0.98562 0.88999 0.91390 0.89241 0.82645 0.81652 0.72464 0.82783 0.81803 0.89939 0.88421 0.95346 0.92170 0.92826 0.95173 0.90175 0.88277 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.50 9.22 71.24 0.66 -1.84 16 2 C 0.19 5.28 6.81 43.28 0.29 5.58 16 3 N -0.49 -13.15 10.20 -175.80 -1.79 -14.94 16 4 C 0.12 2.84 6.61 40.30 0.27 3.10 16 5 C -0.09 -1.59 9.96 22.33 0.22 -1.37 16 6 C -0.10 -1.42 9.87 22.14 0.22 -1.20 16 7 C 0.11 1.71 6.65 22.27 0.15 1.85 16 8 O -0.50 -6.17 13.47 -92.39 -1.24 -7.42 16 9 C -0.12 -2.17 9.69 22.43 0.22 -1.96 16 10 C -0.11 -2.44 5.74 -21.29 -0.12 -2.57 16 11 C -0.01 -0.27 7.29 23.02 0.17 -0.10 16 12 C -0.19 -5.34 4.99 -20.00 -0.10 -5.44 16 13 C 0.57 17.77 6.42 86.76 0.56 18.33 16 14 O -0.56 -19.71 14.73 -3.93 -0.06 -19.77 16 15 N -0.59 -18.75 2.94 -820.67 -2.41 -21.17 16 16 C 0.09 2.94 5.37 86.56 0.46 3.40 16 17 C 0.13 5.28 4.59 86.56 0.40 5.68 16 18 N -0.61 -27.20 2.90 -697.35 -2.02 -29.23 16 19 C -0.27 -14.30 9.91 84.03 0.83 -13.47 16 20 H 0.07 3.76 7.95 -2.91 -0.02 3.74 16 21 C 0.00 -0.18 4.83 84.86 0.41 0.23 16 22 N -0.91 -53.06 13.97 21.65 0.30 -52.75 16 23 Si 0.87 42.23 26.11 68.60 1.79 44.02 16 24 H -0.31 -15.48 7.11 99.48 0.71 -14.78 16 25 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 26 H -0.25 -11.19 5.13 99.48 0.51 -10.68 16 27 C 0.13 4.95 6.67 86.41 0.58 5.53 16 28 C 0.10 3.34 6.60 86.41 0.57 3.91 16 29 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.07 1.88 6.36 -2.39 -0.02 1.87 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.42 0.84 9.06 -74.06 -0.67 0.17 16 35 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.16 3.25 7.08 -2.91 -0.02 3.23 16 37 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.10 2.71 4.84 -2.39 -0.01 2.70 16 39 H 0.03 1.17 7.19 -2.39 -0.02 1.16 16 40 H 0.06 2.64 4.46 -2.39 -0.01 2.63 16 41 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 2.84 7.86 -2.39 -0.02 2.82 16 44 H 0.10 2.98 6.99 -2.38 -0.02 2.96 16 45 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -70.14 359.86 0.52 -69.62 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.18 Total: 11.98 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 5.78 Total: 19.65 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -5.93 Total: -118.09 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -1.30 Total: -27.18 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.79 Total: 44.02 kcal Total: -70.14 0.52 -69.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527764661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.011 kcal (2) G-P(sol) polarization free energy of solvation -70.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds