Wall clock time and date at job start Sat Apr 11 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30841 * 125.90171 * 2 1 4 4 N 1.40080 * 108.20885 * 180.02562 * 3 2 1 5 5 C 1.46498 * 126.03779 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47186 * 90.02525 * 5 4 3 7 7 H 1.08002 * 119.99724 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00148 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99966 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00019 * 180.02562 * 8 6 5 11 11 H 1.48509 * 109.47113 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47240 * 119.99549 * 10 8 6 13 13 H 1.48493 * 109.47206 * 239.99880 * 10 8 6 14 14 C 1.34951 * 107.92655 * 359.76050 * 4 3 2 15 15 C 1.50691 * 126.12920 * 180.23912 * 14 4 3 16 16 C 1.35320 * 107.74087 * 0.38413 * 14 4 3 17 17 C 1.50697 * 126.03559 * 179.86911 * 16 14 4 18 18 C 1.52996 * 109.47491 * 269.71891 * 17 16 14 19 19 C 1.50702 * 109.47159 * 179.97438 * 18 17 16 20 20 O 1.21283 * 120.00262 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99928 * 179.72352 * 19 18 17 22 22 C 1.46499 * 120.00199 * 180.27479 * 21 19 18 23 23 H 1.09001 * 109.46948 * 35.00281 * 22 21 19 24 24 C 1.52997 * 109.47288 * 275.00460 * 22 21 19 25 25 F 1.39903 * 109.47316 * 60.00008 * 24 22 21 26 26 C 1.50700 * 109.47343 * 155.00212 * 22 21 19 27 27 O 1.20830 * 119.99818 * 0.02562 * 26 22 21 28 28 O 1.34230 * 119.99936 * 180.02562 * 26 22 21 29 29 H 1.09008 * 109.46859 * 269.97319 * 1 2 3 30 30 H 1.08996 * 109.47281 * 29.97137 * 1 2 3 31 31 H 1.08993 * 109.47447 * 149.97430 * 1 2 3 32 32 H 1.08998 * 109.47342 * 210.02575 * 5 4 3 33 33 H 1.08995 * 109.47362 * 330.02800 * 5 4 3 34 34 H 0.96998 * 119.99767 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47196 * 270.17568 * 15 14 4 36 36 H 1.09005 * 109.47565 * 30.17689 * 15 14 4 37 37 H 1.09005 * 109.47499 * 150.17275 * 15 14 4 38 38 H 1.09004 * 109.46801 * 149.71930 * 17 16 14 39 39 H 1.09000 * 109.47461 * 29.72462 * 17 16 14 40 40 H 1.09004 * 109.47066 * 60.00201 * 18 17 16 41 41 H 1.08994 * 109.47405 * 300.00031 * 18 17 16 42 42 H 0.97000 * 120.00317 * 0.28382 * 21 19 18 43 43 H 1.09007 * 109.47320 * 179.97438 * 24 22 21 44 44 H 1.08993 * 109.47268 * 299.99834 * 24 22 21 45 45 H 0.96704 * 116.99478 * 179.97438 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7898 1.5008 -0.0003 6 6 5.1956 1.7965 1.4207 7 1 4.6303 1.3801 2.2414 8 6 6.2883 2.5986 1.6730 9 7 6.9762 3.1060 0.6735 10 14 6.7916 2.9645 3.4342 11 1 5.8618 2.2788 4.3674 12 1 8.1744 2.4752 3.6658 13 1 6.7389 4.4297 3.6699 14 6 3.6142 -0.7154 0.0044 15 6 4.8349 -1.5989 0.0108 16 6 2.3271 -1.1330 -0.0006 17 6 1.8599 -2.5657 -0.0004 18 6 1.7013 -3.0507 -1.4428 19 6 1.2348 -4.4836 -1.4426 20 8 1.0470 -5.0601 -0.3922 21 7 1.0202 -5.1226 -2.6097 22 6 0.5609 -6.5138 -2.6095 23 1 -0.1105 -6.6746 -1.7660 24 6 1.7658 -7.4487 -2.4877 25 9 2.4446 -7.1817 -1.2939 26 6 -0.1703 -6.8015 -3.8954 27 8 -0.2946 -5.9337 -4.7270 28 8 -0.6836 -8.0219 -4.1170 29 1 -0.3633 -0.0005 1.0278 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 5.6090 0.9988 -0.5150 33 1 4.5561 2.4338 -0.5129 34 1 7.7452 3.6700 0.8510 35 1 5.1338 -1.8131 -1.0153 36 1 5.6489 -1.0903 0.5276 37 1 4.6053 -2.5323 0.5248 38 1 0.9012 -2.6352 0.5137 39 1 2.5935 -3.1871 0.5133 40 1 2.6600 -2.9812 -1.9570 41 1 0.9677 -2.4294 -1.9565 42 1 1.1701 -4.6616 -3.4498 43 1 1.4239 -8.4838 -2.4871 44 1 2.4371 -7.2880 -3.3312 45 1 -1.1443 -8.1586 -4.9562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608006289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:26 Heat of formation + Delta-G solvation = -148.451533 kcal Electronic energy + Delta-G solvation = -29422.538864 eV Core-core repulsion = 24968.419954 eV Total energy + Delta-G solvation = -4454.118911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.60349 -42.14876 -41.68462 -40.44465 -37.35326 -36.22106 -35.95963 -34.84337 -34.17626 -32.22683 -31.16714 -30.42271 -28.05217 -27.61145 -25.92855 -25.22994 -23.93096 -22.34053 -21.50770 -20.30315 -20.12845 -19.24139 -18.83788 -18.71393 -17.87800 -17.41830 -17.19154 -17.03921 -16.50674 -16.20656 -16.19220 -16.15476 -15.91699 -15.36387 -14.88768 -14.70517 -14.57587 -14.39044 -14.03248 -13.94175 -13.81855 -13.54370 -13.38982 -13.23754 -13.18151 -12.89226 -12.84718 -12.73072 -12.62887 -12.59499 -12.56179 -12.23254 -12.05395 -11.87724 -11.83947 -11.69319 -11.15563 -10.92219 -10.75814 -10.31678 -9.82482 -9.02129 -8.35341 -6.53096 0.92195 1.18269 1.34268 1.36173 1.44686 1.49022 1.65847 1.93621 1.95884 2.27063 2.32854 2.93847 3.37864 3.68134 3.78809 3.89175 3.94270 3.96954 4.20862 4.25717 4.27861 4.32046 4.36262 4.61348 4.64941 4.70400 4.74444 4.77275 4.83704 4.86422 4.88321 4.97960 5.06511 5.15883 5.18549 5.36097 5.44439 5.45675 5.50405 5.57738 5.80088 6.06646 6.32692 6.38266 6.62843 6.81510 7.12754 7.18415 7.18687 8.70765 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.002161 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.995729 B =12956.131144 C =13520.064375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 N -0.351 5.351 4 N -0.356 5.356 5 C 0.275 3.725 6 C -0.552 4.552 7 H 0.046 0.954 8 C 0.021 3.979 9 N -0.918 5.918 10 Si 0.971 3.029 11 H -0.275 1.275 12 H -0.265 1.265 13 H -0.274 1.274 14 C 0.079 3.921 15 C -0.087 4.087 16 C -0.258 4.258 17 C -0.003 4.003 18 C -0.124 4.124 19 C 0.526 3.474 20 O -0.556 6.556 21 N -0.718 5.718 22 C 0.119 3.881 23 H 0.133 0.867 24 C 0.055 3.945 25 F -0.218 7.218 26 C 0.499 3.501 27 O -0.528 6.528 28 O -0.498 6.498 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.019 0.981 34 H 0.274 0.726 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.419 0.581 43 H 0.124 0.876 44 H 0.098 0.902 45 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.688 -25.181 -11.705 30.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.174 5.174 4 N -0.136 5.136 5 C 0.156 3.844 6 C -0.590 4.590 7 H 0.065 0.935 8 C -0.180 4.180 9 N -0.556 5.556 10 Si 0.795 3.205 11 H -0.199 1.199 12 H -0.190 1.190 13 H -0.199 1.199 14 C -0.051 4.051 15 C -0.145 4.145 16 C -0.269 4.269 17 C -0.042 4.042 18 C -0.164 4.164 19 C 0.314 3.686 20 O -0.433 6.433 21 N -0.375 5.375 22 C 0.011 3.989 23 H 0.150 0.850 24 C -0.001 4.001 25 F -0.199 7.199 26 C 0.340 3.660 27 O -0.417 6.417 28 O -0.312 6.312 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.258 0.742 43 H 0.142 0.858 44 H 0.116 0.884 45 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges -13.323 -23.794 -10.868 29.356 hybrid contribution 0.352 0.260 -0.095 0.448 sum -12.971 -23.534 -10.963 29.022 Atomic orbital electron populations 1.20205 0.84711 1.03842 1.03342 1.22790 0.98118 0.90212 0.99963 1.77199 0.87854 1.25069 1.27318 1.49006 1.05298 1.05167 1.54170 1.19119 0.79014 0.88766 0.97491 1.21462 1.13395 1.32320 0.91840 0.93546 1.25754 0.95471 0.94469 1.02291 1.70008 1.19432 1.33257 1.32932 0.85307 0.78423 0.78220 0.78524 1.19939 1.19029 1.19909 1.21463 0.98233 0.84658 1.00716 1.20481 0.92374 0.97786 1.03865 1.19712 0.90341 0.96515 1.20352 1.19370 1.01513 0.88337 0.95025 1.21632 1.04418 0.90630 0.99706 1.21016 0.75776 0.89087 0.82684 1.90728 1.51666 1.68756 1.32186 1.45797 1.69366 1.12007 1.10294 1.20991 0.97616 0.84610 0.95655 0.84995 1.22515 0.92318 1.00615 0.84669 1.92846 1.81595 1.95651 1.49815 1.22628 0.75983 0.80312 0.87066 1.90781 1.56801 1.47547 1.46589 1.84444 1.67674 1.31754 1.47310 0.90315 0.91178 0.88367 0.93534 0.96296 0.91727 0.88894 0.92324 0.88246 0.90893 0.91611 0.87709 0.87243 0.74222 0.85814 0.88394 0.69779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.67 10.12 71.23 0.72 -0.95 16 2 C 0.05 2.03 7.22 43.10 0.31 2.34 16 3 N -0.35 -16.64 12.58 -47.39 -0.60 -17.24 16 4 N -0.36 -17.30 3.60 -338.41 -1.22 -18.51 16 5 C 0.28 14.92 5.81 85.63 0.50 15.42 16 6 C -0.55 -31.79 9.39 25.60 0.24 -31.55 16 7 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 8 C 0.02 1.18 5.46 84.65 0.46 1.64 16 9 N -0.92 -52.81 13.29 21.45 0.28 -52.53 16 10 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 C 0.08 3.15 6.93 41.40 0.29 3.44 16 15 C -0.09 -2.84 9.68 71.23 0.69 -2.15 16 16 C -0.26 -8.95 5.35 -20.14 -0.11 -9.06 16 17 C 0.00 -0.09 4.45 29.85 0.13 0.04 16 18 C -0.12 -2.50 5.68 29.85 0.17 -2.33 16 19 C 0.53 10.91 7.36 87.66 0.65 11.56 16 20 O -0.56 -15.47 14.56 -3.04 -0.04 -15.52 16 21 N -0.72 -10.77 4.94 -446.10 -2.21 -12.98 16 22 C 0.12 1.43 2.96 44.24 0.13 1.56 16 23 H 0.13 1.80 7.58 -2.39 -0.02 1.78 16 24 C 0.05 0.57 7.12 71.98 0.51 1.08 16 25 F -0.22 -4.49 15.72 44.97 0.71 -3.78 16 26 C 0.50 4.81 7.69 71.24 0.55 5.35 16 27 O -0.53 -8.19 16.60 21.95 0.36 -7.83 16 28 O -0.50 -1.73 13.33 -51.41 -0.69 -2.41 16 29 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.10 2.00 7.92 -2.39 -0.02 1.98 16 32 H 0.05 2.50 7.68 -2.39 -0.02 2.48 16 33 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 35 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.06 2.19 7.74 -2.38 -0.02 2.17 16 37 H 0.10 2.72 7.14 -2.38 -0.02 2.71 16 38 H 0.07 1.92 7.88 -2.38 -0.02 1.90 16 39 H 0.07 1.84 7.09 -2.39 -0.02 1.82 16 40 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.42 5.18 7.79 -92.71 -0.72 4.46 16 43 H 0.12 0.60 8.12 -2.38 -0.02 0.58 16 44 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.44 -2.03 9.10 -74.05 -0.67 -2.70 16 Total: -1.00 -80.02 391.83 3.52 -76.49 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -0.35 Total: 11.79 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 5.24 Total: -3.59 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -3.73 Total: -101.26 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.37 Total: -25.76 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.71 Total: -3.78 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -80.02 3.52 -76.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608006289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.959 kcal (2) G-P(sol) polarization free energy of solvation -80.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds