Wall clock time and date at job start Sat Apr 11 2020 06:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99972 * 2 1 4 4 H 1.48506 * 109.46932 * 269.99800 * 3 2 1 5 5 H 1.48502 * 109.47440 * 29.99606 * 3 2 1 6 6 H 1.48503 * 109.47206 * 150.00035 * 3 2 1 7 7 C 1.38950 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99772 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00228 * 179.97438 * 7 2 1 10 10 C 1.34781 * 120.00279 * 179.72855 * 9 7 2 11 11 O 1.21298 * 119.99719 * 0.27557 * 10 9 7 12 12 C 1.50698 * 120.00466 * 180.28097 * 10 9 7 13 13 N 1.46896 * 109.47165 * 180.02562 * 12 10 9 14 14 C 1.48282 * 111.00374 * 76.51264 * 13 12 10 15 15 C 1.56006 * 105.06967 * 122.54021 * 14 13 12 16 16 H 1.09002 * 116.21843 * 158.90241 * 15 14 13 17 17 C 1.57075 * 99.67973 * 32.87912 * 15 14 13 18 18 C 1.49710 * 110.99841 * 194.11213 * 13 12 10 19 19 H 1.09000 * 116.16383 * 76.14353 * 18 13 12 20 20 C 1.56019 * 104.08396 * 306.12670 * 18 13 12 21 21 N 1.49279 * 104.13225 * 287.95730 * 15 14 13 22 22 C 1.34779 * 126.92744 * 246.89082 * 21 15 14 23 23 O 1.21274 * 120.00152 * 0.02562 * 22 21 15 24 24 C 1.50701 * 119.99612 * 179.97438 * 22 21 15 25 25 F 1.39897 * 110.45714 * 310.69820 * 24 22 21 26 26 C 1.54512 * 110.50764 * 188.09815 * 24 22 21 27 27 C 1.54485 * 104.06139 * 241.35450 * 26 24 22 28 28 O 1.44429 * 104.80143 * 23.97765 * 27 26 24 29 29 C 1.44783 * 105.29697 * 319.45508 * 28 27 26 30 30 H 0.97006 * 119.99717 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00097 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46796 * 300.00308 * 12 10 9 33 33 H 1.08998 * 109.46926 * 59.99806 * 12 10 9 34 34 H 1.09000 * 110.32472 * 241.44118 * 14 13 12 35 35 H 1.09001 * 110.31826 * 3.54554 * 14 13 12 36 36 H 1.08998 * 112.35792 * 64.13620 * 17 15 14 37 37 H 1.08994 * 112.35827 * 191.46344 * 17 15 14 38 38 H 1.08994 * 110.31935 * 47.70703 * 20 18 13 39 39 H 1.08994 * 110.31281 * 169.79673 * 20 18 13 40 40 H 1.08997 * 110.51369 * 359.97438 * 26 24 22 41 41 H 1.08996 * 110.51574 * 122.57741 * 26 24 22 42 42 H 1.09000 * 110.36957 * 142.80684 * 27 26 24 43 43 H 1.08998 * 110.37102 * 265.03502 * 27 26 24 44 44 H 1.09001 * 110.42572 * 281.77631 * 29 28 27 45 45 H 1.08997 * 110.48841 * 159.32583 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0061 11 8 3.4473 -3.4210 0.0069 12 6 5.5608 -2.3705 0.0119 13 7 6.0504 -3.7555 0.0172 14 6 5.9283 -4.3676 -1.3278 15 6 7.3753 -4.8140 -1.7031 16 1 7.4579 -5.5855 -2.4688 17 6 7.9163 -5.1835 -0.2755 18 6 7.5058 -3.8086 0.3638 19 1 7.7550 -3.6671 1.4154 20 6 8.1749 -2.8369 -0.6571 21 7 8.0914 -3.5339 -1.9800 22 6 8.5682 -3.1134 -3.1685 23 8 8.4312 -3.8045 -4.1556 24 6 9.2705 -1.7840 -3.2708 25 9 8.5109 -0.7813 -2.6586 26 6 9.5444 -1.4289 -4.7495 27 6 11.0842 -1.3370 -4.8343 28 8 11.5632 -2.1506 -3.7413 29 6 10.6756 -1.8636 -2.6340 30 1 -0.4850 0.8401 -0.0004 31 1 3.8648 -0.3633 -0.0004 32 1 5.9275 -1.8593 -0.8783 33 1 5.9206 -1.8541 0.9017 34 1 5.2632 -5.2304 -1.2922 35 1 5.5587 -3.6347 -2.0450 36 1 7.3798 -6.0230 0.1667 37 1 8.9949 -5.3401 -0.2686 38 1 7.6275 -1.8952 -0.6980 39 1 9.2147 -2.6579 -0.3836 40 1 9.1723 -2.2151 -5.4063 41 1 9.0882 -0.4722 -5.0034 42 1 11.4361 -1.7350 -5.7861 43 1 11.4100 -0.3041 -4.7119 44 1 10.9379 -0.9113 -2.1732 45 1 10.7133 -2.6658 -1.8971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692374849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:54 Heat of formation + Delta-G solvation = -94.772006 kcal Electronic energy + Delta-G solvation = -31515.360098 eV Core-core repulsion = 27063.568906 eV Total energy + Delta-G solvation = -4451.791192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.38170 -41.38492 -39.93861 -38.48327 -37.97102 -34.30801 -33.71558 -32.22167 -31.71807 -31.26144 -30.01993 -29.53770 -26.80879 -25.61935 -24.33189 -23.83393 -22.94860 -21.19133 -20.64003 -19.67758 -19.12677 -18.36455 -17.79923 -17.40294 -17.09274 -16.79337 -16.13656 -15.72500 -15.52896 -15.34871 -14.96967 -14.88318 -14.80394 -14.38988 -13.85186 -13.77361 -13.69401 -13.44537 -13.13131 -12.89453 -12.60026 -12.57537 -12.45241 -12.28729 -12.07265 -12.02218 -11.92413 -11.75630 -11.51385 -11.31050 -11.27371 -11.23800 -10.98627 -10.60159 -10.56086 -10.06577 -9.97349 -9.55965 -9.09989 -8.60717 -8.17538 -8.06761 -6.30498 -3.81786 2.02759 2.30183 3.01958 3.06718 3.14719 3.27405 3.46956 3.65377 3.72115 3.74248 3.79973 4.10371 4.12456 4.25419 4.30504 4.51741 4.56911 4.66752 4.75723 4.77803 4.84227 4.97048 5.02681 5.12883 5.18293 5.24129 5.25223 5.30036 5.45757 5.48603 5.53767 5.60063 5.60328 5.62959 5.80557 5.85561 5.95827 6.08555 6.17046 6.80197 6.93460 7.08049 7.58492 7.61452 8.14790 8.60878 8.96072 9.43057 9.84266 10.82735 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.003494 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.618970 B = 8012.655866 C = 9319.255027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.878 3.122 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.303 4.303 8 H 0.119 0.881 9 N -0.593 5.593 10 C 0.454 3.546 11 O -0.556 6.556 12 C 0.030 3.970 13 N -0.486 5.486 14 C 0.041 3.959 15 C 0.105 3.895 16 H 0.128 0.872 17 C -0.131 4.131 18 C 0.054 3.946 19 H 0.140 0.860 20 C 0.055 3.945 21 N -0.614 5.614 22 C 0.530 3.470 23 O -0.517 6.517 24 C 0.073 3.927 25 F -0.181 7.181 26 C -0.173 4.173 27 C 0.048 3.952 28 O -0.359 6.359 29 C 0.036 3.964 30 H 0.273 0.727 31 H 0.369 0.631 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.767 -1.795 -3.839 26.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.233 5.233 10 C 0.239 3.761 11 O -0.437 6.437 12 C -0.102 4.102 13 N -0.210 5.210 14 C -0.087 4.087 15 C 0.003 3.997 16 H 0.146 0.854 17 C -0.169 4.169 18 C -0.055 4.055 19 H 0.158 0.842 20 C -0.069 4.069 21 N -0.348 5.348 22 C 0.315 3.685 23 O -0.392 6.392 24 C 0.051 3.949 25 F -0.161 7.161 26 C -0.211 4.211 27 C -0.029 4.029 28 O -0.278 6.278 29 C -0.041 4.041 30 H 0.084 0.916 31 H 0.202 0.798 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.132 0.868 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 24.912 -3.110 -4.079 25.435 hybrid contribution 0.689 2.429 -0.488 2.572 sum 25.601 -0.681 -4.567 26.014 Atomic orbital electron populations 1.69623 1.05622 1.27446 1.49533 1.25025 0.95477 0.97918 0.97723 0.86690 0.79789 0.84150 0.78867 1.19693 1.20147 1.19505 1.19417 0.79196 0.96609 1.47988 0.86290 1.42201 1.07521 1.06075 1.67469 1.19588 0.87887 0.84596 0.84035 1.90565 1.69274 1.30843 1.53056 1.22198 0.96070 0.90212 1.01676 1.64621 1.13587 1.16667 1.26090 1.23659 0.94585 1.01192 0.89300 1.24254 0.92293 0.85971 0.97206 0.85440 1.23931 1.01257 0.97696 0.94014 1.24804 0.87982 0.94167 0.98509 0.84238 1.23874 1.02096 0.97937 0.82964 1.49655 1.56246 1.21600 1.07333 1.19888 0.78889 0.87390 0.82305 1.90723 1.56972 1.56446 1.35072 1.22513 0.92145 0.84572 0.95672 1.92941 1.77421 1.61363 1.84382 1.23573 0.98113 1.05707 0.93660 1.23477 0.91781 0.95898 0.91746 1.89273 1.51883 1.65284 1.21324 1.24017 0.85358 1.03809 0.90964 0.91638 0.79829 0.92715 0.89079 0.88399 0.91964 0.87935 0.89827 0.89201 0.90716 0.86791 0.88128 0.87833 0.91308 0.89347 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.91 13.96 55.50 0.77 -25.14 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.47 27.74 -169.99 -4.71 14.75 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 7 C -0.30 -8.62 10.16 -14.94 -0.15 -8.77 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 9 N -0.59 -14.16 5.09 -10.96 -0.06 -14.21 16 10 C 0.45 10.25 7.63 -10.98 -0.08 10.17 16 11 O -0.56 -14.85 15.47 5.54 0.09 -14.77 16 12 C 0.03 0.49 4.13 -4.98 -0.02 0.47 16 13 N -0.49 -7.09 4.84 -218.18 -1.06 -8.15 16 14 C 0.04 0.61 5.43 -1.45 -0.01 0.60 16 15 C 0.11 1.21 5.18 -62.57 -0.32 0.89 16 16 H 0.13 1.45 8.05 -51.93 -0.42 1.03 16 17 C -0.13 -1.16 6.81 -22.31 -0.15 -1.31 16 18 C 0.05 0.53 5.21 -62.31 -0.32 0.20 16 19 H 0.14 1.05 8.14 -51.93 -0.42 0.63 16 20 C 0.05 0.52 5.05 -0.61 0.00 0.52 16 21 N -0.61 -7.14 3.01 -155.26 -0.47 -7.61 16 22 C 0.53 6.89 6.87 -10.98 -0.08 6.81 16 23 O -0.52 -8.18 15.66 5.56 0.09 -8.10 16 24 C 0.07 0.77 1.28 -90.20 -0.12 0.65 16 25 F -0.18 -2.06 15.43 2.25 0.03 -2.02 16 26 C -0.17 -1.60 6.51 -25.16 -0.16 -1.76 16 27 C 0.05 0.36 7.63 37.94 0.29 0.65 16 28 O -0.36 -3.57 11.66 -35.23 -0.41 -3.98 16 29 C 0.04 0.31 6.65 37.93 0.25 0.56 16 30 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.37 7.77 5.76 -40.82 -0.24 7.53 16 32 H 0.06 0.84 6.11 -51.93 -0.32 0.52 16 33 H 0.09 1.24 8.03 -51.93 -0.42 0.82 16 34 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.06 1.07 7.41 -51.93 -0.39 0.69 16 36 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.96 4.83 -51.93 -0.25 0.70 16 39 H 0.07 0.52 7.03 -51.93 -0.37 0.15 16 40 H 0.11 1.23 6.54 -51.93 -0.34 0.89 16 41 H 0.10 0.80 8.06 -51.93 -0.42 0.39 16 42 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.59 8.12 -51.93 -0.42 0.17 16 45 H 0.11 0.81 6.85 -51.93 -0.36 0.46 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -35.58 358.99 -7.31 -42.89 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -6.02 Total: 10.21 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -0.98 Total: 10.72 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.81 Total: -55.11 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.24 Total: -26.85 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.03 Total: -2.02 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.58 -7.31 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692374849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.887 kcal (2) G-P(sol) polarization free energy of solvation -35.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds