Wall clock time and date at job start Sat Apr 11 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 119.99972 * 2 1 4 4 H 1.48506 * 109.46932 * 269.99800 * 3 2 1 5 5 H 1.48502 * 109.47440 * 29.99606 * 3 2 1 6 6 H 1.48503 * 109.47206 * 150.00035 * 3 2 1 7 7 C 1.38950 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99772 * 0.02562 * 7 2 1 9 9 N 1.37092 * 120.00228 * 179.97438 * 7 2 1 10 10 C 1.34781 * 120.00279 * 179.72855 * 9 7 2 11 11 O 1.21298 * 119.99719 * 0.27557 * 10 9 7 12 12 C 1.50698 * 120.00466 * 180.28097 * 10 9 7 13 13 N 1.46896 * 109.47165 * 180.02562 * 12 10 9 14 14 C 1.48282 * 111.00374 * 76.51264 * 13 12 10 15 15 C 1.56006 * 105.06967 * 122.54021 * 14 13 12 16 16 H 1.09002 * 116.21843 * 158.90241 * 15 14 13 17 17 C 1.57075 * 99.67973 * 32.87912 * 15 14 13 18 18 C 1.49710 * 110.99841 * 194.11213 * 13 12 10 19 19 H 1.09000 * 116.16383 * 76.14353 * 18 13 12 20 20 C 1.56019 * 104.08396 * 306.12670 * 18 13 12 21 21 N 1.49279 * 104.13225 * 287.95730 * 15 14 13 22 22 C 1.34779 * 126.92744 * 246.89082 * 21 15 14 23 23 O 1.21274 * 120.00152 * 0.02562 * 22 21 15 24 24 C 1.50701 * 119.99612 * 179.97438 * 22 21 15 25 25 F 1.39897 * 110.45714 * 310.69820 * 24 22 21 26 26 C 1.54512 * 110.50764 * 188.09815 * 24 22 21 27 27 C 1.54485 * 104.06139 * 241.35450 * 26 24 22 28 28 O 1.44429 * 104.80143 * 23.97765 * 27 26 24 29 29 C 1.44783 * 105.29697 * 319.45508 * 28 27 26 30 30 H 0.97006 * 119.99717 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00097 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.46796 * 300.00308 * 12 10 9 33 33 H 1.08998 * 109.46926 * 59.99806 * 12 10 9 34 34 H 1.09000 * 110.32472 * 241.44118 * 14 13 12 35 35 H 1.09001 * 110.31826 * 3.54554 * 14 13 12 36 36 H 1.08998 * 112.35792 * 64.13620 * 17 15 14 37 37 H 1.08994 * 112.35827 * 191.46344 * 17 15 14 38 38 H 1.08994 * 110.31935 * 47.70703 * 20 18 13 39 39 H 1.08994 * 110.31281 * 169.79673 * 20 18 13 40 40 H 1.08997 * 110.51369 * 359.97438 * 26 24 22 41 41 H 1.08996 * 110.51574 * 122.57741 * 26 24 22 42 42 H 1.09000 * 110.36957 * 142.80684 * 27 26 24 43 43 H 1.08998 * 110.37102 * 265.03502 * 27 26 24 44 44 H 1.09001 * 110.42572 * 281.77631 * 29 28 27 45 45 H 1.08997 * 110.48841 * 159.32583 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0061 11 8 3.4473 -3.4210 0.0069 12 6 5.5608 -2.3705 0.0119 13 7 6.0504 -3.7555 0.0172 14 6 5.9283 -4.3676 -1.3278 15 6 7.3753 -4.8140 -1.7031 16 1 7.4579 -5.5855 -2.4688 17 6 7.9163 -5.1835 -0.2755 18 6 7.5058 -3.8086 0.3638 19 1 7.7550 -3.6671 1.4154 20 6 8.1749 -2.8369 -0.6571 21 7 8.0914 -3.5339 -1.9800 22 6 8.5682 -3.1134 -3.1685 23 8 8.4312 -3.8045 -4.1556 24 6 9.2705 -1.7840 -3.2708 25 9 8.5109 -0.7813 -2.6586 26 6 9.5444 -1.4289 -4.7495 27 6 11.0842 -1.3370 -4.8343 28 8 11.5632 -2.1506 -3.7413 29 6 10.6756 -1.8636 -2.6340 30 1 -0.4850 0.8401 -0.0004 31 1 3.8648 -0.3633 -0.0004 32 1 5.9275 -1.8593 -0.8783 33 1 5.9206 -1.8541 0.9017 34 1 5.2632 -5.2304 -1.2922 35 1 5.5587 -3.6347 -2.0450 36 1 7.3798 -6.0230 0.1667 37 1 8.9949 -5.3401 -0.2686 38 1 7.6275 -1.8952 -0.6980 39 1 9.2147 -2.6579 -0.3836 40 1 9.1723 -2.2151 -5.4063 41 1 9.0882 -0.4722 -5.0034 42 1 11.4361 -1.7350 -5.7861 43 1 11.4100 -0.3041 -4.7119 44 1 10.9379 -0.9113 -2.1732 45 1 10.7133 -2.6658 -1.8971 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692374849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:53 Heat of formation + Delta-G solvation = -124.476623 kcal Electronic energy + Delta-G solvation = -31516.648187 eV Core-core repulsion = 27063.568906 eV Total energy + Delta-G solvation = -4453.079281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.19253 -42.34452 -40.79154 -39.96624 -39.14810 -36.07848 -35.08125 -33.77279 -33.00224 -32.26864 -30.93915 -30.21789 -28.32019 -26.49445 -25.88832 -24.78535 -23.73819 -22.05700 -21.59700 -21.30018 -20.56290 -19.87447 -18.78962 -18.24851 -17.94197 -17.91435 -17.15995 -16.92366 -16.71199 -16.44404 -16.30160 -15.99366 -15.66078 -15.51005 -15.22437 -14.96249 -14.75262 -14.54766 -14.31029 -14.23068 -13.99713 -13.76837 -13.69832 -13.28607 -13.16028 -13.00842 -12.80198 -12.67629 -12.56692 -12.43231 -12.41060 -12.18986 -12.13965 -11.98553 -11.96107 -11.52357 -11.33146 -10.85996 -10.47881 -10.25746 -9.99293 -9.24989 -8.42637 -6.03451 1.08963 1.27628 1.33628 1.42460 1.44312 1.94843 2.21363 2.49658 2.65519 2.69850 3.00024 3.07125 3.12479 3.14049 3.33442 3.47156 3.59795 3.68111 3.89260 3.92947 4.07839 4.09681 4.11189 4.20520 4.29250 4.36777 4.41674 4.43676 4.51009 4.61223 4.64604 4.70647 4.72527 4.88745 4.89548 4.92370 5.00815 5.10245 5.50088 5.50518 5.70766 5.83700 5.96412 6.18058 6.58396 6.67388 6.87334 7.38511 7.96377 8.75233 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013194 B = 0.003494 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.618970 B = 8012.655866 C = 9319.255027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.963 3.037 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.228 1.228 7 C -0.328 4.328 8 H 0.054 0.946 9 N -0.594 5.594 10 C 0.450 3.550 11 O -0.607 6.607 12 C 0.047 3.953 13 N -0.509 5.509 14 C 0.044 3.956 15 C 0.104 3.896 16 H 0.122 0.878 17 C -0.114 4.114 18 C 0.062 3.938 19 H 0.176 0.824 20 C 0.053 3.947 21 N -0.613 5.613 22 C 0.520 3.480 23 O -0.558 6.558 24 C 0.071 3.929 25 F -0.185 7.185 26 C -0.176 4.176 27 C 0.050 3.950 28 O -0.380 6.380 29 C 0.042 3.958 30 H 0.279 0.721 31 H 0.388 0.612 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.073 0.927 35 H 0.026 0.974 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.114 0.886 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.438 0.659 -2.350 30.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.214 4.214 3 Si 0.783 3.217 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.151 1.151 7 C -0.457 4.457 8 H 0.072 0.928 9 N -0.236 5.236 10 C 0.237 3.763 11 O -0.490 6.490 12 C -0.084 4.084 13 N -0.233 5.233 14 C -0.085 4.085 15 C 0.001 3.999 16 H 0.140 0.860 17 C -0.152 4.152 18 C -0.045 4.045 19 H 0.193 0.807 20 C -0.069 4.069 21 N -0.347 5.347 22 C 0.306 3.694 23 O -0.437 6.437 24 C 0.050 3.950 25 F -0.165 7.165 26 C -0.214 4.214 27 C -0.026 4.026 28 O -0.299 6.299 29 C -0.036 4.036 30 H 0.089 0.911 31 H 0.223 0.777 32 H 0.086 0.914 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.121 0.879 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.111 0.889 44 H 0.132 0.868 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 29.622 -0.658 -2.559 29.739 hybrid contribution -0.884 1.494 -0.981 1.994 sum 28.737 0.836 -3.540 28.966 Atomic orbital electron populations 1.69809 1.08143 1.29226 1.50439 1.26109 0.96466 1.02685 0.96110 0.85394 0.79722 0.76820 0.79790 1.18605 1.19734 1.15089 1.18986 0.81501 0.94875 1.50318 0.92813 1.42037 1.05802 1.07547 1.68207 1.20963 0.90907 0.83307 0.81086 1.90542 1.71308 1.32720 1.54449 1.22053 0.90392 0.91872 1.04081 1.64511 1.17552 1.15723 1.25518 1.23469 0.96444 0.99426 0.89202 1.24197 0.90364 0.86250 0.99091 0.86013 1.23916 1.02834 0.97360 0.91056 1.25121 0.84296 0.94658 1.00394 0.80673 1.24047 1.04429 0.97032 0.81422 1.49762 1.55273 1.21617 1.08033 1.20450 0.78724 0.88158 0.82034 1.90700 1.58679 1.57869 1.36469 1.22576 0.92880 0.82922 0.96664 1.92928 1.77782 1.61290 1.84497 1.23597 0.99703 1.05373 0.92702 1.23618 0.90200 0.97079 0.91748 1.89250 1.52258 1.66137 1.22223 1.24136 0.83318 1.05520 0.90604 0.91149 0.77652 0.91388 0.85072 0.90883 0.95505 0.87868 0.86861 0.89843 0.86734 0.89066 0.87054 0.86969 0.88854 0.86811 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.13 13.96 21.66 0.30 -56.83 16 2 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 3 Si 0.96 39.15 27.74 68.60 1.90 41.05 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.23 -7.67 6.52 99.48 0.65 -7.03 16 7 C -0.33 -19.51 10.16 84.04 0.85 -18.66 16 8 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 9 N -0.59 -28.47 5.09 -306.98 -1.56 -30.04 16 10 C 0.45 20.60 7.63 87.66 0.67 21.27 16 11 O -0.61 -34.18 15.47 -3.09 -0.05 -34.23 16 12 C 0.05 1.43 4.13 85.56 0.35 1.78 16 13 N -0.51 -14.08 4.84 -844.20 -4.09 -18.16 16 14 C 0.04 1.33 5.43 87.08 0.47 1.80 16 15 C 0.10 2.33 5.18 46.93 0.24 2.57 16 16 H 0.12 2.84 8.05 -2.39 -0.02 2.82 16 17 C -0.11 -1.64 6.81 33.46 0.23 -1.42 16 18 C 0.06 0.95 5.21 46.85 0.24 1.20 16 19 H 0.18 1.54 8.14 -2.39 -0.02 1.52 16 20 C 0.05 0.78 5.05 86.79 0.44 1.21 16 21 N -0.61 -13.10 3.01 -763.53 -2.30 -15.40 16 22 C 0.52 13.01 6.87 87.66 0.60 13.61 16 23 O -0.56 -18.10 15.66 -3.01 -0.05 -18.14 16 24 C 0.07 1.35 1.28 -10.52 -0.01 1.33 16 25 F -0.18 -3.66 15.43 44.97 0.69 -2.97 16 26 C -0.18 -3.02 6.51 31.61 0.21 -2.82 16 27 C 0.05 0.63 7.63 72.49 0.55 1.19 16 28 O -0.38 -6.49 11.66 -148.98 -1.74 -8.23 16 29 C 0.04 0.55 6.65 72.48 0.48 1.04 16 30 H 0.28 15.55 8.31 -92.70 -0.77 14.78 16 31 H 0.39 15.42 5.76 -92.71 -0.53 14.88 16 32 H 0.07 1.92 6.11 -2.38 -0.01 1.91 16 33 H 0.13 2.95 8.03 -2.39 -0.02 2.93 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.03 0.98 7.41 -2.39 -0.02 0.96 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.40 4.83 -2.39 -0.01 1.39 16 39 H 0.11 0.87 7.03 -2.39 -0.02 0.85 16 40 H 0.09 2.00 6.54 -2.39 -0.02 1.99 16 41 H 0.11 1.60 8.06 -2.39 -0.02 1.58 16 42 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.11 0.96 8.12 -2.39 -0.02 0.94 16 45 H 0.12 1.27 6.85 -2.39 -0.02 1.25 16 Total: -1.00 -86.78 358.99 -0.63 -87.41 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.45 Total: 31.82 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 5.80 Total: 23.72 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -7.65 Total: -120.43 kcal Atomic # 8 Polarization: -58.77 SS G_CDS: -1.83 Total: -60.60 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.69 Total: -2.97 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.90 Total: 41.05 kcal Total: -86.78 -0.63 -87.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692374849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.067 kcal (2) G-P(sol) polarization free energy of solvation -86.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds