Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36612 * 120.92016 * 2 1 4 4 C 1.39275 * 119.90585 * 180.02562 * 3 2 1 5 5 N 1.31139 * 121.76866 * 359.93379 * 4 3 2 6 6 C 1.33617 * 121.39562 * 0.02562 * 5 4 3 7 7 C 1.40771 * 120.83496 * 180.02562 * 6 5 4 8 8 C 1.35696 * 120.10896 * 179.67985 * 7 6 5 9 9 C 1.40636 * 120.92682 * 0.56389 * 8 7 6 10 10 C 1.47764 * 119.79965 * 179.73072 * 9 8 7 11 11 O 1.21565 * 119.99776 * 179.73020 * 10 9 8 12 12 N 1.34774 * 120.00304 * 359.73071 * 10 9 8 13 13 C 1.46498 * 120.00210 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47297 * 179.97438 * 13 12 10 15 15 O 1.42908 * 113.28077 * 313.06848 * 14 13 12 16 16 C 1.53495 * 114.20705 * 180.02562 * 14 13 12 17 17 N 1.47066 * 87.98548 * 220.34462 * 16 14 13 18 18 C 1.36933 * 136.05515 * 207.08569 * 17 16 14 19 19 H 1.07994 * 120.00522 * 6.49943 * 18 17 16 20 20 C 1.38813 * 119.99615 * 186.49718 * 18 17 16 21 21 N 1.31621 * 119.99986 * 6.13435 * 20 18 17 22 22 Si 1.86800 * 119.99906 * 186.40574 * 20 18 17 23 23 H 1.48501 * 109.47119 * 264.74574 * 22 20 18 24 24 H 1.48504 * 109.47233 * 24.74441 * 22 20 18 25 25 H 1.48503 * 109.47248 * 144.74737 * 22 20 18 26 26 C 1.47066 * 87.88243 * 27.34326 * 17 16 14 27 27 C 1.38544 * 120.39231 * 359.45858 * 9 8 7 28 28 C 1.40186 * 119.40697 * 0.25241 * 27 9 8 29 29 H 1.09005 * 109.47117 * 270.04656 * 1 2 3 30 30 H 1.08998 * 109.47007 * 30.04417 * 1 2 3 31 31 H 1.08994 * 109.47060 * 150.04601 * 1 2 3 32 32 H 1.08004 * 120.04698 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.10991 * 179.97438 * 4 3 2 34 34 H 1.07998 * 119.94314 * 0.02562 * 7 6 5 35 35 H 1.08006 * 119.53613 * 180.30335 * 8 7 6 36 36 H 0.97002 * 119.99901 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.46914 * 60.00291 * 13 12 10 38 38 H 1.08994 * 109.47449 * 299.99888 * 13 12 10 39 39 H 0.96692 * 113.99823 * 46.93029 * 15 14 13 40 40 H 1.09003 * 113.46642 * 105.56186 * 16 14 13 41 41 H 1.08991 * 113.52338 * 335.13845 * 16 14 13 42 42 H 0.97003 * 119.99732 * 180.27038 * 21 20 18 43 43 H 1.08993 * 113.46844 * 87.44082 * 26 17 16 44 44 H 1.09005 * 113.46768 * 217.87931 * 26 17 16 45 45 H 1.08008 * 120.29554 * 180.27253 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2721 0.0204 0.0002 6 6 3.6479 -1.1611 0.0011 7 6 4.3796 -2.3637 0.0024 8 6 3.7305 -3.5553 0.0098 9 6 2.3254 -3.6131 0.0044 10 6 1.6443 -4.9244 0.0066 11 8 0.4298 -4.9785 0.0068 12 7 2.3694 -6.0604 0.0084 13 6 1.6941 -7.3605 0.0112 14 6 2.7391 -8.4780 0.0122 15 8 3.7788 -8.2800 -0.9481 16 6 2.1465 -9.8939 0.0144 17 7 3.2003 -10.2775 0.9659 18 6 3.8594 -11.4319 1.2945 19 1 3.6976 -12.3295 0.7162 20 6 4.7356 -11.4484 2.3710 21 7 4.8426 -10.3919 3.1487 22 14 5.7685 -12.9672 2.7113 23 1 5.0832 -13.8164 3.7185 24 1 5.9466 -13.7367 1.4537 25 1 7.0970 -12.5559 3.2323 26 6 3.2300 -8.8769 1.4136 27 6 1.5760 -2.4478 0.0025 28 6 2.2308 -1.2083 0.0008 29 1 -0.3633 0.0008 1.0277 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3633 -0.8903 -0.5131 32 1 1.6849 2.1163 -0.0004 33 1 4.1435 2.0814 -0.0010 34 1 5.4592 -2.3378 0.0032 35 1 4.3011 -4.4724 0.0158 36 1 3.3385 -6.0173 0.0078 37 1 1.0703 -7.4477 -0.8784 38 1 1.0711 -7.4444 0.9016 39 1 4.1499 -7.3871 -0.9474 40 1 2.2257 -10.3993 -0.9481 41 1 1.1423 -9.9445 0.4352 42 1 5.4578 -10.4021 3.8986 43 1 2.5116 -8.6584 2.2036 44 1 4.2325 -8.5157 1.6430 45 1 0.4969 -2.4940 0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699918002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = 37.099544 kcal Electronic energy + Delta-G solvation = -28409.305777 eV Core-core repulsion = 24394.002189 eV Total energy + Delta-G solvation = -4015.303588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.35311 -40.00284 -38.81392 -36.98316 -35.20781 -35.00127 -34.08764 -32.09128 -31.22092 -30.71069 -28.79859 -28.17016 -26.30400 -24.86757 -24.49780 -23.94097 -22.12494 -21.39774 -21.08930 -19.51385 -18.86923 -18.21737 -16.99395 -16.91726 -16.48527 -15.88674 -15.61472 -15.37006 -14.96950 -14.78643 -14.65805 -14.38992 -14.10582 -13.98192 -13.90527 -13.53856 -13.51965 -13.26584 -13.18126 -12.89746 -12.77340 -12.27465 -12.08568 -12.05300 -11.79096 -11.75981 -11.17977 -10.87270 -10.76733 -10.57312 -10.48955 -10.18098 -9.87622 -9.84360 -9.53634 -9.29787 -9.15536 -8.93939 -8.83370 -8.55266 -6.93360 -5.81633 -3.12065 -0.12260 0.31995 1.54664 2.14058 3.00032 3.12146 3.38303 3.43502 3.45983 3.76989 3.88757 4.09925 4.21020 4.35839 4.40087 4.41873 4.49385 4.65494 4.71777 4.80627 4.96206 4.96972 5.07159 5.11146 5.15424 5.27593 5.29488 5.50714 5.55055 5.58717 5.61698 5.67641 5.71211 5.90378 5.94141 6.00466 6.13406 6.23192 6.35582 6.40485 6.48569 6.50654 6.97441 7.04994 7.34651 7.44434 7.53454 7.91545 8.01421 8.11235 8.99798 9.66450 10.57739 11.37268 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020602 B = 0.002153 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.740685 B =13002.754570 C =13803.229643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.011 4.011 3 C -0.187 4.187 4 C 0.144 3.856 5 N -0.482 5.482 6 C 0.147 3.853 7 C -0.096 4.096 8 C -0.074 4.074 9 C -0.131 4.131 10 C 0.559 3.441 11 O -0.537 6.537 12 N -0.717 5.717 13 C 0.107 3.893 14 C 0.055 3.945 15 O -0.521 6.521 16 C 0.134 3.866 17 N -0.599 5.599 18 C -0.214 4.214 19 H 0.083 0.917 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.915 3.085 23 H -0.289 1.289 24 H -0.279 1.279 25 H -0.290 1.290 26 C 0.144 3.856 27 C -0.027 4.027 28 C -0.114 4.114 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.161 0.839 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.397 0.603 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.359 0.641 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.254 0.746 43 H 0.038 0.962 44 H 0.065 0.935 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.052 25.257 -7.448 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.019 4.019 3 C -0.207 4.207 4 C -0.028 4.028 5 N -0.190 5.190 6 C 0.025 3.975 7 C -0.114 4.114 8 C -0.094 4.094 9 C -0.134 4.134 10 C 0.346 3.654 11 O -0.415 6.415 12 N -0.370 5.370 13 C -0.017 4.017 14 C 0.012 3.988 15 O -0.324 6.324 16 C 0.007 3.993 17 N -0.324 5.324 18 C -0.341 4.341 19 H 0.100 0.900 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.205 1.205 25 H -0.216 1.216 26 C 0.017 3.983 27 C -0.047 4.047 28 C -0.116 4.116 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.156 0.844 33 H 0.178 0.822 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.234 0.766 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.205 0.795 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.872 24.180 -7.388 25.956 hybrid contribution 0.287 -0.122 0.581 0.660 sum -5.585 24.058 -6.807 25.618 Atomic orbital electron populations 1.20959 0.89673 1.04006 1.03591 1.20265 0.96854 0.91995 0.92808 1.21776 0.95634 0.98822 1.04497 1.23010 0.91527 0.96508 0.91792 1.68080 1.39890 0.97707 1.13366 1.19014 0.89541 0.92630 0.96282 1.20705 1.00774 0.89672 1.00291 1.21002 0.92993 0.98649 0.96763 1.19962 0.93804 0.93619 1.06041 1.18121 0.86922 0.83765 0.76552 1.90777 1.13330 1.87485 1.49957 1.45858 1.10353 1.06030 1.74779 1.21995 0.95882 0.80621 1.03199 1.23511 0.87979 0.94250 0.93093 1.86657 1.53385 1.34191 1.58151 1.22378 0.92852 0.88992 0.95101 1.45365 1.39255 1.05570 1.42218 1.18918 1.17942 0.87424 1.09850 0.89957 1.24820 1.00795 0.98044 0.96820 1.69839 1.39693 1.28868 1.18398 0.86064 0.79696 0.81806 0.77973 1.21607 1.20461 1.21577 1.22690 1.00034 0.85233 0.90326 1.21465 1.00774 0.89670 0.92788 1.18671 0.94120 0.93953 1.04826 0.89762 0.90404 0.90288 0.84351 0.82218 0.83898 0.84638 0.76631 0.90738 0.89868 0.79521 0.92980 0.93293 0.93640 0.94405 0.91631 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.70 9.59 36.01 0.35 -0.35 16 2 C -0.01 -0.09 5.92 -104.22 -0.62 -0.71 16 3 C -0.19 -1.25 9.72 -39.78 -0.39 -1.64 16 4 C 0.14 1.11 11.14 -17.46 -0.19 0.91 16 5 N -0.48 -5.13 10.33 -10.92 -0.11 -5.25 16 6 C 0.15 1.62 6.61 -84.78 -0.56 1.06 16 7 C -0.10 -0.95 9.95 -39.53 -0.39 -1.35 16 8 C -0.07 -0.71 9.44 -39.59 -0.37 -1.08 16 9 C -0.13 -1.49 5.87 -104.99 -0.62 -2.11 16 10 C 0.56 7.55 7.77 -12.37 -0.10 7.46 16 11 O -0.54 -8.87 16.31 5.31 0.09 -8.78 16 12 N -0.72 -9.03 5.29 -61.28 -0.32 -9.36 16 13 C 0.11 1.58 5.42 -4.04 -0.02 1.56 16 14 C 0.05 0.97 1.74 -89.97 -0.16 0.82 16 15 O -0.52 -9.16 13.57 -35.23 -0.48 -9.64 16 16 C 0.13 2.74 8.10 -8.52 -0.07 2.67 16 17 N -0.60 -15.44 3.76 -184.61 -0.70 -16.14 16 18 C -0.21 -6.07 10.73 -15.06 -0.16 -6.23 16 19 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.32 11.80 55.49 0.65 -26.66 16 22 Si 0.91 22.26 29.56 -169.99 -5.02 17.23 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.14 3.25 6.67 -8.38 -0.06 3.19 16 27 C -0.03 -0.29 8.88 -38.74 -0.34 -0.64 16 28 C -0.11 -1.17 5.74 -106.82 -0.61 -1.78 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.30 8.10 -51.93 -0.42 -0.12 16 31 H 0.08 0.46 6.51 -51.93 -0.34 0.12 16 32 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 33 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.14 1.00 6.35 -52.48 -0.33 0.66 16 36 H 0.40 4.13 4.94 -40.82 -0.20 3.93 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.29 7.89 -51.93 -0.41 0.88 16 39 H 0.36 4.56 7.21 45.56 0.33 4.89 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.04 0.88 7.93 -51.93 -0.41 0.47 16 44 H 0.07 1.63 7.57 -51.93 -0.39 1.24 16 45 H 0.15 1.48 6.00 -52.48 -0.31 1.16 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -36.38 376.06 -9.63 -46.01 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.00 Total: 5.46 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -4.41 Total: 1.45 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.48 Total: -57.41 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.39 Total: -18.42 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.38 -9.63 -46.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699918002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.109 kcal (2) G-P(sol) polarization free energy of solvation -36.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds