Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36612 * 120.92016 * 2 1 4 4 C 1.39275 * 119.90585 * 180.02562 * 3 2 1 5 5 N 1.31139 * 121.76866 * 359.93379 * 4 3 2 6 6 C 1.33617 * 121.39562 * 0.02562 * 5 4 3 7 7 C 1.40771 * 120.83496 * 180.02562 * 6 5 4 8 8 C 1.35696 * 120.10896 * 179.67985 * 7 6 5 9 9 C 1.40636 * 120.92682 * 0.56389 * 8 7 6 10 10 C 1.47764 * 119.79965 * 179.73072 * 9 8 7 11 11 O 1.21565 * 119.99776 * 179.73020 * 10 9 8 12 12 N 1.34774 * 120.00304 * 359.73071 * 10 9 8 13 13 C 1.46498 * 120.00210 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47297 * 179.97438 * 13 12 10 15 15 O 1.42908 * 113.28077 * 313.06848 * 14 13 12 16 16 C 1.53495 * 114.20705 * 180.02562 * 14 13 12 17 17 N 1.47066 * 87.98548 * 220.34462 * 16 14 13 18 18 C 1.36933 * 136.05515 * 207.08569 * 17 16 14 19 19 H 1.07994 * 120.00522 * 6.49943 * 18 17 16 20 20 C 1.38813 * 119.99615 * 186.49718 * 18 17 16 21 21 N 1.31621 * 119.99986 * 6.13435 * 20 18 17 22 22 Si 1.86800 * 119.99906 * 186.40574 * 20 18 17 23 23 H 1.48501 * 109.47119 * 264.74574 * 22 20 18 24 24 H 1.48504 * 109.47233 * 24.74441 * 22 20 18 25 25 H 1.48503 * 109.47248 * 144.74737 * 22 20 18 26 26 C 1.47066 * 87.88243 * 27.34326 * 17 16 14 27 27 C 1.38544 * 120.39231 * 359.45858 * 9 8 7 28 28 C 1.40186 * 119.40697 * 0.25241 * 27 9 8 29 29 H 1.09005 * 109.47117 * 270.04656 * 1 2 3 30 30 H 1.08998 * 109.47007 * 30.04417 * 1 2 3 31 31 H 1.08994 * 109.47060 * 150.04601 * 1 2 3 32 32 H 1.08004 * 120.04698 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.10991 * 179.97438 * 4 3 2 34 34 H 1.07998 * 119.94314 * 0.02562 * 7 6 5 35 35 H 1.08006 * 119.53613 * 180.30335 * 8 7 6 36 36 H 0.97002 * 119.99901 * 359.97438 * 12 10 9 37 37 H 1.09002 * 109.46914 * 60.00291 * 13 12 10 38 38 H 1.08994 * 109.47449 * 299.99888 * 13 12 10 39 39 H 0.96692 * 113.99823 * 46.93029 * 15 14 13 40 40 H 1.09003 * 113.46642 * 105.56186 * 16 14 13 41 41 H 1.08991 * 113.52338 * 335.13845 * 16 14 13 42 42 H 0.97003 * 119.99732 * 180.27038 * 21 20 18 43 43 H 1.08993 * 113.46844 * 87.44082 * 26 17 16 44 44 H 1.09005 * 113.46768 * 217.87931 * 26 17 16 45 45 H 1.08008 * 120.29554 * 180.27253 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2721 0.0204 0.0002 6 6 3.6479 -1.1611 0.0011 7 6 4.3796 -2.3637 0.0024 8 6 3.7305 -3.5553 0.0098 9 6 2.3254 -3.6131 0.0044 10 6 1.6443 -4.9244 0.0066 11 8 0.4298 -4.9785 0.0068 12 7 2.3694 -6.0604 0.0084 13 6 1.6941 -7.3605 0.0112 14 6 2.7391 -8.4780 0.0122 15 8 3.7788 -8.2800 -0.9481 16 6 2.1465 -9.8939 0.0144 17 7 3.2003 -10.2775 0.9659 18 6 3.8594 -11.4319 1.2945 19 1 3.6976 -12.3295 0.7162 20 6 4.7356 -11.4484 2.3710 21 7 4.8426 -10.3919 3.1487 22 14 5.7685 -12.9672 2.7113 23 1 5.0832 -13.8164 3.7185 24 1 5.9466 -13.7367 1.4537 25 1 7.0970 -12.5559 3.2323 26 6 3.2300 -8.8769 1.4136 27 6 1.5760 -2.4478 0.0025 28 6 2.2308 -1.2083 0.0008 29 1 -0.3633 0.0008 1.0277 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3633 -0.8903 -0.5131 32 1 1.6849 2.1163 -0.0004 33 1 4.1435 2.0814 -0.0010 34 1 5.4592 -2.3378 0.0032 35 1 4.3011 -4.4724 0.0158 36 1 3.3385 -6.0173 0.0078 37 1 1.0703 -7.4477 -0.8784 38 1 1.0711 -7.4444 0.9016 39 1 4.1499 -7.3871 -0.9474 40 1 2.2257 -10.3993 -0.9481 41 1 1.1423 -9.9445 0.4352 42 1 5.4578 -10.4021 3.8986 43 1 2.5116 -8.6584 2.2036 44 1 4.2325 -8.5157 1.6430 45 1 0.4969 -2.4940 0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699918002.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = 10.253708 kcal Electronic energy + Delta-G solvation = -28410.469900 eV Core-core repulsion = 24394.002189 eV Total energy + Delta-G solvation = -4016.467710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.08237 -41.19805 -40.21345 -37.76822 -36.66108 -35.72740 -35.31095 -34.10060 -32.04260 -31.42262 -30.26902 -28.87381 -27.84582 -26.57164 -25.49417 -24.65009 -23.75846 -22.22663 -21.98298 -21.09672 -19.89309 -18.97764 -18.72901 -17.77695 -17.63639 -17.13249 -16.82926 -16.45896 -16.41329 -15.81785 -15.60249 -15.52082 -15.34580 -15.06204 -15.01688 -14.71880 -14.57005 -14.38291 -13.98582 -13.90982 -13.77696 -13.52504 -13.44877 -13.07762 -12.79831 -12.71768 -12.69100 -12.54708 -12.39810 -12.24314 -11.81404 -11.43921 -11.20373 -11.13504 -10.93346 -10.70895 -10.51375 -10.26872 -9.85054 -9.28046 -8.96591 -7.95394 -5.26677 -0.84278 -0.36841 0.82817 1.35486 1.44734 1.46534 1.56147 1.93490 2.24215 2.45249 3.00947 3.04786 3.24065 3.28177 3.33232 3.46701 3.49481 3.59558 3.66082 3.79602 3.87269 3.96334 4.01593 4.25325 4.36742 4.46151 4.50930 4.67405 4.71864 4.72605 4.75205 4.76841 4.86496 4.90751 4.92583 5.01466 5.13236 5.14162 5.15481 5.19441 5.26464 5.33289 5.44394 5.50450 5.75058 5.87390 6.32481 6.78403 6.87777 6.88732 7.03805 7.55896 8.55192 9.23406 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020602 B = 0.002153 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.740685 B =13002.754570 C =13803.229643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.020 4.020 3 C -0.180 4.180 4 C 0.144 3.856 5 N -0.514 5.514 6 C 0.129 3.871 7 C -0.105 4.105 8 C -0.072 4.072 9 C -0.148 4.148 10 C 0.563 3.437 11 O -0.571 6.571 12 N -0.710 5.710 13 C 0.122 3.878 14 C 0.093 3.907 15 O -0.534 6.534 16 C 0.127 3.873 17 N -0.635 5.635 18 C -0.228 4.228 19 H 0.084 0.916 20 C -0.067 4.067 21 N -0.953 5.953 22 Si 0.981 3.019 23 H -0.286 1.286 24 H -0.268 1.268 25 H -0.292 1.292 26 C 0.142 3.858 27 C -0.026 4.026 28 C -0.131 4.131 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.175 0.825 33 H 0.193 0.807 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.408 0.592 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.381 0.619 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.249 0.751 43 H 0.029 0.971 44 H 0.036 0.964 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.384 27.082 -8.403 29.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.028 4.028 3 C -0.200 4.200 4 C -0.027 4.027 5 N -0.223 5.223 6 C 0.007 3.993 7 C -0.123 4.123 8 C -0.092 4.092 9 C -0.151 4.151 10 C 0.352 3.648 11 O -0.452 6.452 12 N -0.364 5.364 13 C -0.003 4.003 14 C 0.050 3.950 15 O -0.341 6.341 16 C 0.002 3.998 17 N -0.360 5.360 18 C -0.356 4.356 19 H 0.102 0.898 20 C -0.260 4.260 21 N -0.601 5.601 22 Si 0.809 3.191 23 H -0.212 1.212 24 H -0.193 1.193 25 H -0.219 1.219 26 C 0.015 3.985 27 C -0.046 4.046 28 C -0.133 4.133 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.192 0.808 33 H 0.209 0.791 34 H 0.171 0.829 35 H 0.172 0.828 36 H 0.247 0.753 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.231 0.769 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.202 26.028 -8.377 28.037 hybrid contribution 0.357 -0.509 0.836 1.041 sum -5.845 25.519 -7.542 27.244 Atomic orbital electron populations 1.21020 0.88018 1.04813 1.04232 1.20625 0.98163 0.91662 0.92375 1.22177 0.95331 0.99825 1.02640 1.23683 0.92503 0.96843 0.89689 1.68121 1.40755 0.98315 1.15107 1.19290 0.90106 0.93279 0.96579 1.20890 1.01363 0.89648 1.00421 1.21128 0.92351 0.99444 0.96319 1.19843 0.94521 0.92570 1.08184 1.18381 0.86515 0.84386 0.75539 1.90754 1.14757 1.87963 1.51680 1.45720 1.10905 1.05187 1.74557 1.21704 0.94654 0.80365 1.03588 1.22892 0.87964 0.94289 0.89841 1.86605 1.53542 1.36487 1.57433 1.22609 0.92727 0.90315 0.94185 1.45733 1.40928 1.05918 1.43434 1.19297 1.18058 0.88547 1.09684 0.89822 1.25667 1.02296 1.01069 0.96996 1.70009 1.40484 1.30780 1.18861 0.85024 0.77623 0.78446 0.78001 1.21245 1.19291 1.21875 1.22693 0.98374 0.84429 0.92964 1.21568 1.00904 0.89932 0.92195 1.18852 0.94218 0.94647 1.05613 0.89086 0.88141 0.90956 0.80764 0.79051 0.82894 0.82768 0.75333 0.89498 0.90370 0.76934 0.92593 0.91225 0.94203 0.95341 0.94544 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.59 71.24 0.68 -0.45 16 2 C -0.02 -0.29 5.92 -19.60 -0.12 -0.41 16 3 C -0.18 -1.89 9.72 22.14 0.22 -1.68 16 4 C 0.14 1.89 11.14 85.05 0.95 2.83 16 5 N -0.51 -10.40 10.33 -188.46 -1.95 -12.35 16 6 C 0.13 2.78 6.61 40.37 0.27 3.05 16 7 C -0.10 -2.06 9.95 22.30 0.22 -1.84 16 8 C -0.07 -1.36 9.44 22.27 0.21 -1.15 16 9 C -0.15 -3.34 5.87 -20.10 -0.12 -3.45 16 10 C 0.56 14.96 7.77 86.76 0.67 15.64 16 11 O -0.57 -18.74 16.31 -3.92 -0.06 -18.81 16 12 N -0.71 -17.21 5.29 -466.05 -2.46 -19.68 16 13 C 0.12 3.45 5.42 86.38 0.47 3.91 16 14 C 0.09 3.25 1.74 -10.37 -0.02 3.24 16 15 O -0.53 -18.10 13.57 -148.98 -2.02 -20.12 16 16 C 0.13 5.13 8.10 83.17 0.67 5.80 16 17 N -0.63 -33.02 3.76 -738.47 -2.78 -35.80 16 18 C -0.23 -13.06 10.73 84.03 0.90 -12.16 16 19 H 0.08 4.60 7.84 -2.91 -0.02 4.58 16 20 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 21 N -0.95 -57.84 11.80 21.65 0.26 -57.58 16 22 Si 0.98 46.27 29.56 68.60 2.03 48.30 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 C 0.14 6.52 6.67 83.26 0.56 7.07 16 27 C -0.03 -0.56 8.88 22.82 0.20 -0.36 16 28 C -0.13 -2.62 5.74 -21.29 -0.12 -2.74 16 29 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.10 0.45 8.10 -2.39 -0.02 0.43 16 31 H 0.07 0.77 6.51 -2.39 -0.02 0.75 16 32 H 0.17 0.51 8.06 -2.91 -0.02 0.49 16 33 H 0.19 1.08 8.06 -2.91 -0.02 1.05 16 34 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.15 2.12 6.35 -2.91 -0.02 2.10 16 36 H 0.41 8.02 4.94 -92.71 -0.46 7.56 16 37 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.08 2.35 7.89 -2.39 -0.02 2.33 16 39 H 0.38 9.03 7.21 -74.06 -0.53 8.50 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.07 2.54 8.10 -2.39 -0.02 2.53 16 42 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 43 H 0.03 1.36 7.93 -2.39 -0.02 1.34 16 44 H 0.04 1.86 7.57 -2.38 -0.02 1.84 16 45 H 0.15 3.00 6.00 -2.91 -0.02 2.99 16 Total: -1.00 -80.09 376.06 -0.82 -80.91 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.06 Total: 21.24 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 6.11 Total: 13.89 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -6.94 Total: -125.41 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -2.08 Total: -38.93 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -80.09 -0.82 -80.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699918002.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.165 kcal (2) G-P(sol) polarization free energy of solvation -80.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds