Wall clock time and date at job start Sat Apr 11 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35895 * 117.00038 * 2 1 4 4 C 1.38737 * 120.05327 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94098 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05670 * 0.02736 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47103 * 299.99761 * 7 6 5 9 9 C 1.52997 * 109.47238 * 59.99954 * 7 6 5 10 10 C 1.53002 * 109.46925 * 179.97438 * 7 6 5 11 11 N 1.46496 * 109.47421 * 180.02562 * 10 7 6 12 12 S 1.65602 * 120.00356 * 164.99808 * 11 10 7 13 13 O 1.42101 * 104.27340 * 181.06923 * 12 11 10 14 14 O 1.42102 * 104.27601 * 308.92773 * 12 11 10 15 15 C 1.81401 * 104.44806 * 65.00020 * 12 11 10 16 16 C 1.52991 * 109.46993 * 180.02562 * 15 12 11 17 17 C 1.50699 * 109.47376 * 180.02562 * 16 15 12 18 18 H 1.08007 * 119.99818 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00465 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99842 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00119 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47490 * 89.99688 * 21 19 17 23 23 H 1.48504 * 109.47012 * 209.99570 * 21 19 17 24 24 H 1.48498 * 109.47047 * 329.99611 * 21 19 17 25 25 C 1.38262 * 120.11316 * 0.24341 * 6 5 4 26 26 C 1.38147 * 120.05382 * 359.45639 * 25 6 5 27 27 H 1.09001 * 109.47139 * 300.00432 * 1 2 3 28 28 H 1.09003 * 109.46666 * 60.00318 * 1 2 3 29 29 H 1.08998 * 109.46972 * 180.02562 * 1 2 3 30 30 H 1.07993 * 120.02833 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.97194 * 179.97438 * 5 4 3 32 32 H 1.08992 * 109.47280 * 59.99899 * 8 7 6 33 33 H 1.09002 * 109.46777 * 180.02562 * 8 7 6 34 34 H 1.09000 * 109.47140 * 300.00046 * 8 7 6 35 35 H 1.09004 * 109.47261 * 59.99705 * 9 7 6 36 36 H 1.09002 * 109.47153 * 179.97438 * 9 7 6 37 37 H 1.09001 * 109.46832 * 299.99686 * 9 7 6 38 38 H 1.09004 * 109.46930 * 299.99901 * 10 7 6 39 39 H 1.09004 * 109.47059 * 59.99503 * 10 7 6 40 40 H 0.97006 * 119.99718 * 344.99473 * 11 10 7 41 41 H 1.09002 * 109.47011 * 300.00179 * 15 12 11 42 42 H 1.09002 * 109.47271 * 59.99891 * 15 12 11 43 43 H 1.09002 * 109.47172 * 299.99816 * 16 15 12 44 44 H 1.09002 * 109.47417 * 59.99716 * 16 15 12 45 45 H 0.97003 * 120.00192 * 180.02562 * 20 19 17 46 46 H 1.08003 * 119.97178 * 179.70593 * 25 6 5 47 47 H 1.08001 * 120.02610 * 180.24214 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 6 4.8600 5.1445 1.2524 9 6 4.8608 5.1463 -1.2460 10 6 2.9325 6.1278 0.0026 11 7 3.5976 7.4331 0.0031 12 16 2.7394 8.7999 -0.3682 13 8 3.6976 9.8465 -0.2927 14 8 2.0928 8.4854 -1.5939 15 6 1.5257 8.9502 0.9716 16 6 0.6609 10.1906 0.7394 17 6 -0.3470 10.3159 1.8528 18 1 -0.3688 9.5837 2.6464 19 6 -1.2420 11.3647 1.8578 20 7 -1.2158 12.2561 0.8911 21 14 -2.4908 11.5203 3.2382 22 1 -1.9135 12.3331 4.3388 23 1 -3.7167 12.1825 2.7244 24 1 -2.8351 10.1690 3.7489 25 6 1.9212 3.6047 0.0068 26 6 1.2916 2.3751 0.0000 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 4.0209 0.3798 0.0014 31 1 5.1346 2.5749 0.0019 32 1 5.6106 4.3542 1.2522 33 1 5.3545 6.1159 1.2534 34 1 4.2369 5.0535 2.1421 35 1 4.2384 5.0564 -2.1363 36 1 5.3554 6.1176 -1.2454 37 1 5.6115 4.3559 -1.2463 38 1 2.3104 6.0378 -0.8879 39 1 2.3090 6.0368 0.8921 40 1 4.5407 7.4968 0.2210 41 1 0.8917 8.0636 0.9887 42 1 2.0463 9.0429 1.9248 43 1 1.2946 11.0773 0.7221 44 1 0.1403 10.0975 -0.2137 45 1 -1.8452 12.9942 0.8948 46 1 1.3343 4.5114 0.0120 47 1 0.2130 2.3202 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111334886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:19 Heat of formation + Delta-G solvation = -102.494038 kcal Electronic energy + Delta-G solvation = -27658.613302 eV Core-core repulsion = 23740.407683 eV Total energy + Delta-G solvation = -3918.205619 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.62834 -38.99793 -36.66102 -36.41593 -35.41660 -33.89757 -33.06202 -31.46063 -31.16543 -29.38278 -27.69499 -27.43430 -26.08928 -25.59944 -22.90893 -22.33532 -21.67262 -19.51983 -19.07022 -18.43000 -17.54148 -16.76137 -16.46831 -16.01599 -15.78793 -15.58384 -15.36200 -14.93722 -14.72001 -14.66843 -14.52902 -14.06162 -13.56878 -13.44211 -13.35675 -13.19919 -12.95686 -12.57546 -12.47871 -12.30352 -12.12630 -11.78811 -11.73843 -11.58196 -11.51029 -11.44929 -11.29724 -11.09168 -11.03053 -10.97978 -10.96266 -10.62798 -10.42414 -10.38623 -9.79774 -9.48710 -9.21958 -9.01025 -8.51227 -8.31668 -6.13351 -4.18933 0.80565 1.11543 1.18429 2.99361 3.15853 3.25081 3.31383 3.33880 3.51057 4.22808 4.34074 4.37835 4.42291 4.59519 4.67010 4.73063 4.81649 4.84311 4.85908 4.98506 5.09886 5.14134 5.21830 5.22186 5.34886 5.40387 5.43529 5.53377 5.58882 5.64440 5.69887 5.72374 5.76122 5.83104 5.92331 5.94274 6.08744 6.13357 6.23966 6.41353 6.48524 6.50852 7.09867 7.12492 7.29656 7.35918 7.79614 8.16800 8.84536 9.45866 10.97699 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.002820 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.374314 B = 9925.353927 C =11786.063789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.321 6.321 3 C 0.120 3.880 4 C -0.150 4.150 5 C -0.073 4.073 6 C -0.103 4.103 7 C -0.025 4.025 8 C -0.141 4.141 9 C -0.140 4.140 10 C 0.122 3.878 11 N -1.126 6.126 12 S 2.593 3.407 13 O -0.968 6.968 14 O -0.966 6.966 15 C -0.590 4.590 16 C 0.028 3.972 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.081 4.081 26 C -0.202 4.202 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.411 0.589 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.033 0.967 44 H 0.033 0.967 45 H 0.265 0.735 46 H 0.133 0.867 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.752 -23.647 -0.786 25.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.169 4.169 5 C -0.091 4.091 6 C -0.104 4.104 7 C -0.026 4.026 8 C -0.198 4.198 9 C -0.197 4.197 10 C -0.005 4.005 11 N -0.884 5.884 12 S 2.691 3.309 13 O -0.958 6.958 14 O -0.956 6.956 15 C -0.723 4.723 16 C -0.011 4.011 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.099 4.099 26 C -0.221 4.221 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.246 0.754 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.150 0.850 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.723 -23.159 -1.694 25.174 hybrid contribution -0.936 0.016 1.448 1.725 sum 8.786 -23.143 -0.246 24.756 Atomic orbital electron populations 1.23064 0.78294 1.03888 1.01591 1.86049 1.21470 1.27083 1.88828 1.19060 0.92405 0.84141 0.96914 1.20376 0.91333 0.98523 1.06670 1.20739 0.99759 0.90781 0.97850 1.19605 0.93329 0.94239 1.03216 1.19568 0.95220 0.90827 0.96994 1.21919 0.99332 1.02031 0.96530 1.21901 0.99218 1.02057 0.96532 1.21466 0.94761 0.81997 1.02280 1.55832 1.22456 1.21037 1.89082 1.05517 0.75708 0.72474 0.77232 1.93553 1.59683 1.54670 1.87927 1.93540 1.77346 1.83205 1.41545 1.30445 1.14885 1.10289 1.16713 1.18956 0.94320 0.88573 0.99264 1.21005 1.15988 1.10578 1.08403 0.92065 1.25069 0.97619 0.95591 0.96215 1.69956 1.37163 1.13661 1.32066 0.86474 0.80653 0.78317 0.81860 1.20466 1.21009 1.19775 1.21060 0.94120 0.97562 0.97132 1.21264 1.00193 0.92248 1.08370 0.92526 0.92511 0.88320 0.85370 0.85382 0.92167 0.91928 0.91979 0.92005 0.91819 0.92355 0.89851 0.91389 0.75405 0.86410 0.86092 0.94860 0.94833 0.92525 0.84962 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.08 10.50 -19.41 -0.20 -3.29 16 3 C 0.12 1.20 6.69 -39.21 -0.26 0.94 16 4 C -0.15 -1.39 9.99 -39.43 -0.39 -1.78 16 5 C -0.07 -0.63 8.70 -39.61 -0.34 -0.98 16 6 C -0.10 -0.97 4.76 -104.60 -0.50 -1.47 16 7 C -0.02 -0.22 0.62 -155.66 -0.10 -0.32 16 8 C -0.14 -1.11 8.12 37.16 0.30 -0.81 16 9 C -0.14 -1.25 8.12 37.16 0.30 -0.95 16 10 C 0.12 1.32 3.68 -4.04 -0.01 1.31 16 11 N -1.13 -13.85 5.22 -10.61 -0.06 -13.91 16 12 S 2.59 45.01 5.46 -107.50 -0.59 44.42 16 13 O -0.97 -19.74 18.08 -57.54 -1.04 -20.78 16 14 O -0.97 -19.61 17.50 -57.54 -1.01 -20.61 16 15 C -0.59 -10.98 6.01 37.15 0.22 -10.76 16 16 C 0.03 0.70 4.98 -27.89 -0.14 0.57 16 17 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 18 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 21 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C -0.08 -0.80 8.97 -39.61 -0.36 -1.16 16 26 C -0.20 -1.95 9.04 -39.43 -0.36 -2.31 16 27 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 28 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 29 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.13 0.86 7.09 -52.49 -0.37 0.48 16 32 H 0.06 0.41 7.38 -51.93 -0.38 0.02 16 33 H 0.06 0.47 6.60 -51.93 -0.34 0.12 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.57 7.19 -51.93 -0.37 0.20 16 37 H 0.06 0.43 7.38 -51.93 -0.38 0.05 16 38 H 0.08 0.97 7.08 -51.93 -0.37 0.60 16 39 H 0.07 0.66 7.50 -51.93 -0.39 0.27 16 40 H 0.41 4.27 6.44 -34.47 -0.22 4.04 16 41 H 0.12 1.93 8.14 -51.92 -0.42 1.51 16 42 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 43 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.13 1.22 5.89 -52.48 -0.31 0.91 16 47 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 LS Contribution 390.22 15.07 5.88 5.88 Total: -1.00 -35.67 390.22 -9.54 -45.21 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.19 Total: 2.30 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: -1.05 Total: -29.61 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.68 Total: -39.57 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -2.25 Total: -44.68 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 45.01 SS G_CDS: -0.59 Total: 44.42 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.67 -9.54 -45.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111334886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.286 kcal (2) G-P(sol) polarization free energy of solvation -35.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds