Wall clock time and date at job start Sat Apr 11 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35907 * 116.99763 * 2 1 4 4 C 1.38748 * 120.05851 * 359.95195 * 3 2 1 5 5 C 1.38120 * 119.94664 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05472 * 0.02562 * 5 4 3 7 7 C 1.38248 * 120.11079 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05636 * 359.95965 * 7 6 5 9 9 C 1.50695 * 120.02989 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47508 * 265.00085 * 9 8 7 11 11 C 1.52995 * 109.46990 * 300.00194 * 10 9 8 12 12 C 1.53002 * 109.46793 * 60.00019 * 10 9 8 13 13 N 1.46494 * 109.47318 * 179.97438 * 10 9 8 14 14 S 1.65602 * 120.00053 * 157.52793 * 13 10 9 15 15 O 1.42101 * 104.27781 * 176.18913 * 14 13 10 16 16 O 1.42095 * 104.27848 * 304.05372 * 14 13 10 17 17 C 1.81404 * 104.44648 * 60.12184 * 14 13 10 18 18 C 1.53009 * 109.47069 * 171.74670 * 17 14 13 19 19 C 1.50701 * 109.46872 * 180.02562 * 18 17 14 20 20 H 1.08001 * 120.00419 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99494 * 180.02562 * 19 18 17 22 22 N 1.31519 * 120.00251 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99865 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47348 * 89.99602 * 23 21 19 25 25 H 1.48499 * 109.47506 * 209.99836 * 23 21 19 26 26 H 1.48500 * 109.47211 * 329.99980 * 23 21 19 27 27 H 1.09009 * 109.47002 * 300.00248 * 1 2 3 28 28 H 1.08997 * 109.47268 * 60.00190 * 1 2 3 29 29 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.08005 * 120.02638 * 0.04706 * 4 3 2 31 31 H 1.08003 * 119.97128 * 180.29816 * 5 4 3 32 32 H 1.08002 * 119.94633 * 180.02562 * 6 5 4 33 33 H 1.08002 * 119.96965 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.47034 * 24.99969 * 9 8 7 35 35 H 1.09002 * 109.47480 * 144.99575 * 9 8 7 36 36 H 1.09002 * 109.47705 * 59.99319 * 11 10 9 37 37 H 1.09000 * 109.47042 * 179.97438 * 11 10 9 38 38 H 1.09004 * 109.47158 * 299.99389 * 11 10 9 39 39 H 1.08998 * 109.47384 * 55.10158 * 12 10 9 40 40 H 1.09000 * 109.46949 * 175.10570 * 12 10 9 41 41 H 1.09001 * 109.47192 * 295.09907 * 12 10 9 42 42 H 0.97000 * 120.00489 * 337.52990 * 13 10 9 43 43 H 1.08997 * 109.47437 * 291.74695 * 17 14 13 44 44 H 1.09005 * 109.47454 * 51.74892 * 17 14 13 45 45 H 1.08997 * 109.47011 * 300.00285 * 18 17 14 46 46 H 1.08994 * 109.46629 * 60.00248 * 18 17 14 47 47 H 0.96998 * 119.99674 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2914 2.3753 -0.0010 5 6 1.9208 3.6048 -0.0015 6 6 3.3018 3.6759 -0.0016 7 6 4.0559 2.5171 -0.0017 8 6 3.4311 1.2849 -0.0008 9 6 4.2537 0.0223 -0.0003 10 6 4.4265 -0.4746 -1.4371 11 6 3.0526 -0.7612 -2.0462 12 6 5.1380 0.5973 -2.2652 13 7 5.2266 -1.7017 -1.4366 14 16 5.1242 -2.7574 -2.7083 15 8 6.0862 -3.7598 -2.4099 16 8 3.7410 -3.0714 -2.7926 17 6 5.6449 -1.7839 -4.1477 18 6 5.7909 -2.7051 -5.3607 19 6 6.2240 -1.8964 -6.5563 20 1 6.3792 -0.8319 -6.4608 21 6 6.4211 -2.5155 -7.7724 22 7 6.2316 -3.8117 -7.8889 23 14 6.9573 -1.5130 -9.2547 24 1 8.4405 -1.4732 -9.3150 25 1 6.4281 -2.1387 -10.4931 26 1 6.4296 -0.1302 -9.1342 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.2128 2.3204 -0.0010 31 1 1.3339 4.5114 0.0025 32 1 3.7922 4.6382 -0.0016 33 1 5.1344 2.5753 -0.0021 34 1 5.2325 0.2265 0.4336 35 1 3.7469 -0.7414 0.5897 36 1 2.4575 0.1521 -2.0466 37 1 3.1756 -1.1147 -3.0699 38 1 2.5457 -1.5248 -1.4563 39 1 6.0784 0.8642 -1.7830 40 1 5.3388 0.2107 -3.2643 41 1 4.5036 1.4807 -2.3382 42 1 5.8164 -1.8959 -0.6914 43 1 4.8968 -1.0200 -4.3596 44 1 6.6019 -1.3066 -3.9367 45 1 6.5389 -3.4690 -5.1488 46 1 4.8339 -3.1823 -5.5717 47 1 6.3707 -4.2472 -8.7444 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111340471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:21 Heat of formation + Delta-G solvation = -114.965413 kcal Electronic energy + Delta-G solvation = -28881.104304 eV Core-core repulsion = 24962.357885 eV Total energy + Delta-G solvation = -3918.746419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42187 -39.09769 -38.21617 -37.81330 -36.95479 -35.91155 -33.47908 -33.19745 -31.05717 -30.78158 -28.46997 -28.22655 -27.63541 -27.24188 -23.72187 -22.90873 -22.80398 -20.99645 -20.11181 -19.01827 -18.78014 -18.32179 -17.39975 -17.18693 -17.00391 -16.64001 -16.53821 -16.42434 -16.01397 -15.33980 -15.19731 -15.06192 -14.76127 -14.48075 -14.38579 -14.05025 -13.82484 -13.69745 -13.51371 -13.20103 -13.16324 -12.97978 -12.91772 -12.76892 -12.73242 -12.54361 -12.37368 -12.29135 -12.23043 -12.13459 -11.94487 -11.85200 -11.70366 -11.63024 -11.38217 -11.11322 -10.63557 -10.41992 -9.67290 -8.98054 -8.24820 -6.38704 -0.63662 0.45156 0.59310 1.41299 1.43272 1.54333 1.85846 2.38800 2.49991 2.81200 2.89346 3.08621 3.33367 3.71347 3.85804 3.89600 4.02427 4.08770 4.09686 4.16153 4.26482 4.34966 4.42980 4.43410 4.52996 4.56757 4.70103 4.76670 4.78269 4.79041 4.87395 4.93776 5.01341 5.04979 5.23284 5.25704 5.28122 5.32559 5.46171 5.50446 5.52597 5.63234 5.69812 5.70848 5.97489 6.07222 6.21512 6.56264 6.74860 7.31332 8.87623 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014050 B = 0.003133 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.462002 B = 8935.077577 C = 9694.467402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.327 6.327 3 C 0.116 3.884 4 C -0.219 4.219 5 C -0.089 4.089 6 C -0.163 4.163 7 C -0.078 4.078 8 C -0.124 4.124 9 C -0.061 4.061 10 C 0.182 3.818 11 C -0.165 4.165 12 C -0.189 4.189 13 N -1.099 6.099 14 S 2.614 3.386 15 O -1.005 7.005 16 O -0.989 6.989 17 C -0.590 4.590 18 C 0.023 3.977 19 C -0.536 4.536 20 H 0.077 0.923 21 C -0.004 4.004 22 N -0.935 5.935 23 Si 0.974 3.026 24 H -0.270 1.270 25 H -0.284 1.284 26 H -0.257 1.257 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.425 0.575 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.007 0.993 46 H 0.003 0.997 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 18.056 19.982 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.240 6.240 3 C 0.071 3.929 4 C -0.238 4.238 5 C -0.106 4.106 6 C -0.181 4.181 7 C -0.096 4.096 8 C -0.125 4.125 9 C -0.100 4.100 10 C 0.094 3.906 11 C -0.224 4.224 12 C -0.247 4.247 13 N -0.860 5.860 14 S 2.711 3.289 15 O -0.995 6.995 16 O -0.978 6.978 17 C -0.721 4.721 18 C -0.016 4.016 19 C -0.575 4.575 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.575 5.575 23 Si 0.797 3.203 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.181 1.181 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.123 0.877 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.262 0.738 43 H 0.159 0.841 44 H 0.164 0.836 45 H 0.025 0.975 46 H 0.022 0.978 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.754 16.815 19.813 27.421 hybrid contribution 0.235 0.290 -0.932 1.004 sum -8.519 17.105 18.880 26.863 Atomic orbital electron populations 1.23242 0.77493 1.04857 1.02042 1.86195 1.22478 1.26937 1.88417 1.19103 0.92325 0.84774 0.96735 1.21463 1.00830 0.92352 1.09106 1.21255 0.95215 0.97383 0.96794 1.21353 0.94052 0.99158 1.03557 1.21185 1.01018 0.90542 0.96832 1.19165 0.90467 0.95784 1.07093 1.20584 1.00657 0.94632 0.94097 1.20212 0.89729 0.83264 0.97404 1.22557 0.96529 1.02730 1.00548 1.22762 1.02285 0.99072 1.00566 1.55391 1.57519 1.36571 1.36515 1.04586 0.73644 0.74515 0.76130 1.93487 1.64261 1.57847 1.83946 1.93550 1.33912 1.83574 1.86810 1.30602 1.13126 1.13412 1.15008 1.18808 0.96347 0.94173 0.92267 1.21506 1.46391 0.95436 0.94188 0.90527 1.26121 0.95259 0.96147 1.02729 1.70111 1.49883 1.10990 1.26488 0.85317 0.78674 0.78902 0.77399 1.19552 1.20910 1.18089 0.91415 0.92109 0.87674 0.84305 0.83979 0.83950 0.83520 0.88185 0.90828 0.90550 0.93604 0.91464 0.89449 0.92023 0.90138 0.73848 0.84099 0.83631 0.97498 0.97848 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -6.88 7.10 -92.50 -0.66 -7.53 16 3 C 0.12 2.28 5.21 22.51 0.12 2.40 16 4 C -0.22 -3.53 9.04 22.36 0.20 -3.33 16 5 C -0.09 -1.22 10.04 22.25 0.22 -0.99 16 6 C -0.16 -2.17 10.04 22.28 0.22 -1.95 16 7 C -0.08 -1.14 8.42 22.25 0.19 -0.96 16 8 C -0.12 -2.28 4.02 -19.77 -0.08 -2.36 16 9 C -0.06 -1.15 4.44 29.85 0.13 -1.02 16 10 C 0.18 4.27 0.93 3.60 0.00 4.27 16 11 C -0.17 -4.73 5.59 71.98 0.40 -4.33 16 12 C -0.19 -3.89 7.97 71.98 0.57 -3.32 16 13 N -1.10 -28.84 5.42 -152.23 -0.82 -29.66 16 14 S 2.61 98.04 4.99 -56.49 -0.28 97.76 16 15 O -1.01 -44.44 18.08 -127.65 -2.31 -46.75 16 16 O -0.99 -42.05 14.50 -127.65 -1.85 -43.90 16 17 C -0.59 -23.01 4.18 71.99 0.30 -22.71 16 18 C 0.02 1.22 4.98 29.85 0.15 1.37 16 19 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 20 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 21 C 0.00 -0.25 5.46 84.65 0.46 0.22 16 22 N -0.94 -57.45 13.29 21.45 0.28 -57.17 16 23 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 27 H 0.07 0.73 7.66 -2.38 -0.02 0.71 16 28 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 29 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.14 1.74 6.30 -2.91 -0.02 1.72 16 31 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.10 1.39 8.05 -2.39 -0.02 1.37 16 35 H 0.07 1.55 7.69 -2.39 -0.02 1.54 16 36 H 0.08 1.97 5.67 -2.39 -0.01 1.96 16 37 H 0.05 1.48 5.21 -2.39 -0.01 1.47 16 38 H 0.07 2.11 6.98 -2.39 -0.02 2.10 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 1.46 4.20 -2.39 -0.01 1.45 16 41 H 0.08 1.53 6.75 -2.39 -0.02 1.51 16 42 H 0.42 8.94 8.67 -96.75 -0.84 8.11 16 43 H 0.14 4.97 5.81 -2.39 -0.01 4.95 16 44 H 0.15 4.91 7.90 -2.39 -0.02 4.89 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 47 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -78.07 374.81 0.78 -77.29 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.15 Total: 25.49 kcal Atomic # 6 Polarization: -65.27 SS G_CDS: 4.24 Total: -61.03 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -0.54 Total: -86.83 kcal Atomic # 8 Polarization: -93.36 SS G_CDS: -4.81 Total: -98.18 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 98.04 SS G_CDS: -0.28 Total: 97.76 kcal Total: -78.07 0.78 -77.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111340471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.676 kcal (2) G-P(sol) polarization free energy of solvation -78.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds