Wall clock time and date at job start Sat Apr 11 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.50700 * 109.47082 * 119.99994 * 2 1 3 5 5 C 1.38158 * 120.02768 * 299.99975 * 4 2 1 6 6 C 1.38250 * 120.05410 * 180.02562 * 5 4 2 7 7 C 1.38281 * 120.11168 * 359.97438 * 6 5 4 8 8 C 1.38125 * 120.05855 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.02445 * 119.96036 * 4 2 1 10 10 O 1.35901 * 120.05828 * 0.03985 * 9 4 2 11 11 C 1.42894 * 116.99956 * 179.97438 * 10 9 4 12 12 C 1.53007 * 109.47146 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47187 * 64.99595 * 12 11 10 14 14 S 1.65597 * 119.99753 * 164.99867 * 13 12 11 15 15 O 1.42096 * 104.27632 * 181.06953 * 14 13 12 16 16 O 1.42097 * 104.28114 * 308.93216 * 14 13 12 17 17 C 1.81400 * 104.44670 * 65.00516 * 14 13 12 18 18 C 1.53008 * 109.47241 * 179.97438 * 17 14 13 19 19 C 1.50695 * 109.47335 * 179.97438 * 18 17 14 20 20 H 1.08005 * 119.99779 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00182 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99894 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00494 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46734 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47441 * 119.99709 * 23 21 19 26 26 H 1.48500 * 109.46981 * 240.00163 * 23 21 19 27 27 H 1.08997 * 109.47545 * 300.00024 * 1 2 3 28 28 H 1.09005 * 109.47244 * 59.99753 * 1 2 3 29 29 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46781 * 240.00259 * 2 1 3 31 31 H 1.08997 * 109.47487 * 59.99935 * 3 2 1 32 32 H 1.09003 * 109.47155 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47362 * 300.00175 * 3 2 1 34 34 H 1.08004 * 119.97750 * 359.97438 * 5 4 2 35 35 H 1.07999 * 119.94133 * 179.97438 * 6 5 4 36 36 H 1.07997 * 119.97275 * 180.02562 * 7 6 5 37 37 H 1.07994 * 120.03307 * 179.73079 * 8 7 6 38 38 H 1.09003 * 109.47345 * 299.99594 * 11 10 9 39 39 H 1.09003 * 109.47704 * 59.99947 * 11 10 9 40 40 H 1.08996 * 109.46972 * 184.99920 * 12 11 10 41 41 H 1.09003 * 109.46445 * 304.99769 * 12 11 10 42 42 H 0.96998 * 119.99448 * 345.00520 * 13 12 11 43 43 H 1.09003 * 109.46976 * 299.99347 * 17 14 13 44 44 H 1.08996 * 109.47220 * 59.99636 * 17 14 13 45 45 H 1.08999 * 109.46863 * 300.00208 * 18 17 14 46 46 H 1.09005 * 109.46909 * 59.99770 * 18 17 14 47 47 H 0.97000 * 119.99966 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6989 -0.2389 2.4856 6 6 2.1599 -0.8899 3.6147 7 6 2.9550 -2.0144 3.4912 8 6 3.2903 -2.4904 2.2387 9 6 2.8292 -1.8387 1.1038 10 8 3.1585 -2.3045 -0.1297 11 6 3.9826 -3.4705 -0.1841 12 6 4.2458 -3.8415 -1.6450 13 7 5.0304 -2.7821 -2.2841 14 16 5.7776 -3.0656 -3.7345 15 8 6.4495 -1.8480 -4.0264 16 8 6.5018 -4.2703 -3.5261 17 6 4.4146 -3.3357 -4.9006 18 6 4.9828 -3.6107 -6.2944 19 6 3.8506 -3.8358 -7.2631 20 1 2.8279 -3.7871 -6.9191 21 6 4.1201 -4.1038 -8.5883 22 7 5.3654 -4.1635 -9.0071 23 14 2.7167 -4.3821 -9.7893 24 1 1.4213 -4.2626 -9.0730 25 1 2.7809 -3.3656 -10.8699 26 1 2.8320 -5.7399 -10.3794 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.0783 0.6395 2.5847 35 1 1.8985 -0.5195 4.5950 36 1 3.3136 -2.5214 4.3748 37 1 3.9149 -3.3662 2.1426 38 1 4.9303 -3.2694 0.3156 39 1 3.4767 -4.2968 0.3154 40 1 4.7991 -4.7795 -1.6877 41 1 3.2960 -3.9557 -2.1675 42 1 5.1121 -1.9148 -1.8576 43 1 3.8216 -4.1902 -4.5746 44 1 3.7840 -2.4474 -4.9345 45 1 5.5757 -2.7560 -6.6201 46 1 5.6138 -4.4990 -6.2608 47 1 5.5551 -4.3517 -9.9395 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111364171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:24 Heat of formation + Delta-G solvation = -110.785282 kcal Electronic energy + Delta-G solvation = -27362.077770 eV Core-core repulsion = 23443.512616 eV Total energy + Delta-G solvation = -3918.565155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.65358 -38.15752 -36.60722 -35.58301 -35.49655 -35.15805 -33.89121 -31.15970 -30.43628 -30.21984 -28.65265 -27.31545 -25.60126 -24.27334 -23.10087 -21.96058 -21.65726 -20.23113 -19.05018 -18.39799 -17.49501 -16.90337 -16.50496 -16.34569 -15.84425 -15.58021 -15.41290 -14.85044 -14.67255 -14.52205 -14.35891 -14.14680 -13.88405 -13.58013 -13.32987 -13.09769 -12.75006 -12.51653 -12.51059 -12.31016 -12.17022 -11.92325 -11.74910 -11.60818 -11.52026 -11.44071 -11.33866 -11.14678 -11.09420 -10.95669 -10.83715 -10.74059 -10.41250 -10.38611 -9.81756 -9.50914 -9.11789 -9.03127 -8.50743 -8.38635 -6.12667 -4.18065 0.78618 1.03957 1.17599 2.85088 3.14519 3.25268 3.32612 3.36048 3.47724 4.22815 4.35791 4.37368 4.41607 4.58238 4.61647 4.74846 4.80961 4.85637 4.90011 4.99036 5.02668 5.11203 5.22645 5.24652 5.27011 5.33768 5.43485 5.52643 5.60399 5.63622 5.64275 5.67343 5.77461 5.86147 5.90717 5.95741 6.06138 6.11050 6.23868 6.33618 6.49183 6.51303 7.06401 7.15594 7.30363 7.36371 7.80732 8.17570 8.85698 9.46800 10.98411 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.002484 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.930207 B =11267.763067 C =12319.109582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.105 4.105 5 C -0.080 4.080 6 C -0.158 4.158 7 C -0.086 4.086 8 C -0.208 4.208 9 C 0.133 3.867 10 O -0.307 6.307 11 C 0.052 3.948 12 C 0.120 3.880 13 N -1.126 6.126 14 S 2.594 3.406 15 O -0.966 6.966 16 O -0.968 6.968 17 C -0.589 4.589 18 C 0.027 3.973 19 C -0.519 4.519 20 H 0.062 0.938 21 C 0.057 3.943 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.416 0.584 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.366 5.828 25.952 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.200 4.200 4 C -0.105 4.105 5 C -0.098 4.098 6 C -0.177 4.177 7 C -0.104 4.104 8 C -0.226 4.226 9 C 0.088 3.912 10 O -0.221 6.221 11 C -0.024 4.024 12 C -0.007 4.007 13 N -0.884 5.884 14 S 2.691 3.309 15 O -0.956 6.956 16 O -0.958 6.958 17 C -0.722 4.722 18 C -0.012 4.012 19 C -0.558 4.558 20 H 0.080 0.920 21 C -0.145 4.145 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.249 0.751 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.362 5.667 25.420 27.065 hybrid contribution -1.232 -0.068 -0.364 1.287 sum -8.594 5.600 25.057 27.075 Atomic orbital electron populations 1.21844 0.94437 1.01906 1.01718 1.20010 0.95700 0.95841 0.95800 1.21852 1.01349 0.95077 1.01730 1.19269 1.00244 0.95309 0.95717 1.20832 0.98629 0.99212 0.91080 1.21025 1.00831 0.97280 0.98531 1.20914 0.96917 0.95942 0.96654 1.21266 1.05821 1.02990 0.92562 1.18829 0.94952 0.93509 0.83950 1.86089 1.66155 1.44108 1.25719 1.23064 0.94510 0.86974 0.97867 1.21344 0.96572 0.91264 0.91525 1.55755 1.69620 1.22412 1.40629 1.05533 0.76962 0.74185 0.74218 1.93556 1.72304 1.45924 1.83863 1.93535 1.69583 1.48502 1.84213 1.30438 1.17071 1.10365 1.14351 1.18972 0.97583 0.98402 0.86215 1.21042 0.92445 1.49372 0.92987 0.91987 1.25074 0.95874 0.95109 0.98490 1.69967 1.18048 1.48451 1.16404 0.86416 0.82070 0.77910 0.80905 1.19639 1.20801 1.20816 0.92803 0.92259 0.92635 0.89272 0.92806 0.92511 0.92217 0.85604 0.86112 0.85996 0.85434 0.90982 0.90515 0.88075 0.90434 0.75066 0.86337 0.85998 0.94820 0.94821 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.01 37.16 0.33 -0.81 16 2 C -0.06 -0.51 3.06 -91.77 -0.28 -0.79 16 3 C -0.14 -1.19 9.01 37.16 0.33 -0.86 16 4 C -0.10 -1.01 4.79 -104.48 -0.50 -1.51 16 5 C -0.08 -0.66 8.71 -39.61 -0.34 -1.00 16 6 C -0.16 -1.22 10.04 -39.56 -0.40 -1.62 16 7 C -0.09 -0.68 10.04 -39.61 -0.40 -1.08 16 8 C -0.21 -1.83 9.04 -39.43 -0.36 -2.18 16 9 C 0.13 1.35 6.66 -39.21 -0.26 1.09 16 10 O -0.31 -3.19 8.70 -19.43 -0.17 -3.36 16 11 C 0.05 0.45 4.93 37.16 0.18 0.63 16 12 C 0.12 1.21 6.52 -4.04 -0.03 1.18 16 13 N -1.13 -14.20 5.85 -10.61 -0.06 -14.26 16 14 S 2.59 45.17 5.46 -107.50 -0.59 44.59 16 15 O -0.97 -19.97 18.08 -57.54 -1.04 -21.01 16 16 O -0.97 -19.42 17.50 -57.54 -1.01 -20.43 16 17 C -0.59 -11.02 6.01 37.16 0.22 -10.80 16 18 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 19 C -0.52 -14.28 9.11 -34.45 -0.31 -14.59 16 20 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 23 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H 0.05 0.38 7.39 -51.93 -0.38 -0.01 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.95 6.99 -51.93 -0.36 0.59 16 31 H 0.05 0.39 7.39 -51.93 -0.38 0.00 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.13 0.83 7.10 -52.48 -0.37 0.45 16 35 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 38 H 0.07 0.57 7.66 -51.93 -0.40 0.17 16 39 H 0.08 0.50 7.67 -51.93 -0.40 0.10 16 40 H 0.10 0.97 7.69 -51.93 -0.40 0.57 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.42 4.80 8.47 -34.47 -0.29 4.50 16 43 H 0.12 1.95 8.14 -51.92 -0.42 1.52 16 44 H 0.12 2.09 8.14 -51.93 -0.42 1.66 16 45 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 399.21 15.07 6.02 6.02 Total: -1.00 -35.40 399.21 -10.69 -46.08 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.51 Total: 2.21 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: -2.04 Total: -30.28 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.67 Total: -39.98 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -2.22 Total: -44.80 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 45.17 SS G_CDS: -0.59 Total: 44.59 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.40 -10.69 -46.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111364171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.702 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds