Wall clock time and date at job start Sat Apr 11 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.50700 * 109.47082 * 119.99994 * 2 1 3 5 5 C 1.38158 * 120.02768 * 299.99975 * 4 2 1 6 6 C 1.38250 * 120.05410 * 180.02562 * 5 4 2 7 7 C 1.38281 * 120.11168 * 359.97438 * 6 5 4 8 8 C 1.38125 * 120.05855 * 359.97438 * 7 6 5 9 9 C 1.38711 * 120.02445 * 119.96036 * 4 2 1 10 10 O 1.35901 * 120.05828 * 0.03985 * 9 4 2 11 11 C 1.42894 * 116.99956 * 179.97438 * 10 9 4 12 12 C 1.53007 * 109.47146 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47187 * 64.99595 * 12 11 10 14 14 S 1.65597 * 119.99753 * 164.99867 * 13 12 11 15 15 O 1.42096 * 104.27632 * 181.06953 * 14 13 12 16 16 O 1.42097 * 104.28114 * 308.93216 * 14 13 12 17 17 C 1.81400 * 104.44670 * 65.00516 * 14 13 12 18 18 C 1.53008 * 109.47241 * 179.97438 * 17 14 13 19 19 C 1.50695 * 109.47335 * 179.97438 * 18 17 14 20 20 H 1.08005 * 119.99779 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00182 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99894 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00494 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46734 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47441 * 119.99709 * 23 21 19 26 26 H 1.48500 * 109.46981 * 240.00163 * 23 21 19 27 27 H 1.08997 * 109.47545 * 300.00024 * 1 2 3 28 28 H 1.09005 * 109.47244 * 59.99753 * 1 2 3 29 29 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46781 * 240.00259 * 2 1 3 31 31 H 1.08997 * 109.47487 * 59.99935 * 3 2 1 32 32 H 1.09003 * 109.47155 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47362 * 300.00175 * 3 2 1 34 34 H 1.08004 * 119.97750 * 359.97438 * 5 4 2 35 35 H 1.07999 * 119.94133 * 179.97438 * 6 5 4 36 36 H 1.07997 * 119.97275 * 180.02562 * 7 6 5 37 37 H 1.07994 * 120.03307 * 179.73079 * 8 7 6 38 38 H 1.09003 * 109.47345 * 299.99594 * 11 10 9 39 39 H 1.09003 * 109.47704 * 59.99947 * 11 10 9 40 40 H 1.08996 * 109.46972 * 184.99920 * 12 11 10 41 41 H 1.09003 * 109.46445 * 304.99769 * 12 11 10 42 42 H 0.96998 * 119.99448 * 345.00520 * 13 12 11 43 43 H 1.09003 * 109.46976 * 299.99347 * 17 14 13 44 44 H 1.08996 * 109.47220 * 59.99636 * 17 14 13 45 45 H 1.08999 * 109.46863 * 300.00208 * 18 17 14 46 46 H 1.09005 * 109.46909 * 59.99770 * 18 17 14 47 47 H 0.97000 * 119.99966 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6989 -0.2389 2.4856 6 6 2.1599 -0.8899 3.6147 7 6 2.9550 -2.0144 3.4912 8 6 3.2903 -2.4904 2.2387 9 6 2.8292 -1.8387 1.1038 10 8 3.1585 -2.3045 -0.1297 11 6 3.9826 -3.4705 -0.1841 12 6 4.2458 -3.8415 -1.6450 13 7 5.0304 -2.7821 -2.2841 14 16 5.7776 -3.0656 -3.7345 15 8 6.4495 -1.8480 -4.0264 16 8 6.5018 -4.2703 -3.5261 17 6 4.4146 -3.3357 -4.9006 18 6 4.9828 -3.6107 -6.2944 19 6 3.8506 -3.8358 -7.2631 20 1 2.8279 -3.7871 -6.9191 21 6 4.1201 -4.1038 -8.5883 22 7 5.3654 -4.1635 -9.0071 23 14 2.7167 -4.3821 -9.7893 24 1 1.4213 -4.2626 -9.0730 25 1 2.7809 -3.3656 -10.8699 26 1 2.8320 -5.7399 -10.3794 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.0783 0.6395 2.5847 35 1 1.8985 -0.5195 4.5950 36 1 3.3136 -2.5214 4.3748 37 1 3.9149 -3.3662 2.1426 38 1 4.9303 -3.2694 0.3156 39 1 3.4767 -4.2968 0.3154 40 1 4.7991 -4.7795 -1.6877 41 1 3.2960 -3.9557 -2.1675 42 1 5.1121 -1.9148 -1.8576 43 1 3.8216 -4.1902 -4.5746 44 1 3.7840 -2.4474 -4.9345 45 1 5.5757 -2.7560 -6.6201 46 1 5.6138 -4.4990 -6.2608 47 1 5.5551 -4.3517 -9.9395 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111364171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:23 Heat of formation + Delta-G solvation = -134.616556 kcal Electronic energy + Delta-G solvation = -27363.111172 eV Core-core repulsion = 23443.512616 eV Total energy + Delta-G solvation = -3919.598556 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29409 -38.83843 -38.15084 -37.02352 -36.21985 -36.15002 -35.88549 -33.11415 -31.08423 -30.89731 -29.40410 -27.95677 -27.58410 -24.95967 -23.79742 -23.57727 -22.61337 -20.88622 -20.37038 -19.19688 -18.98151 -18.29949 -17.73646 -17.21996 -16.92771 -16.65546 -16.52272 -16.45023 -15.81984 -15.48308 -15.15718 -14.95176 -14.78600 -14.63209 -14.46971 -14.21677 -13.88434 -13.70423 -13.58476 -13.21959 -13.19172 -13.10580 -12.95201 -12.92051 -12.86833 -12.76881 -12.55229 -12.35934 -12.23500 -12.10693 -12.01783 -11.87586 -11.70842 -11.48887 -11.38445 -11.17345 -10.65146 -10.37867 -9.72454 -9.02723 -8.25862 -6.39495 -0.66813 0.43207 0.55187 1.41118 1.41562 1.54922 1.83753 2.23408 2.38188 2.81583 2.86593 3.07750 3.27440 3.68978 3.74669 3.93281 3.99006 4.10672 4.15549 4.17618 4.23325 4.32515 4.36060 4.37913 4.50016 4.54568 4.61525 4.65422 4.77304 4.82361 4.87053 4.93798 4.95124 5.00961 5.15299 5.23969 5.28804 5.30005 5.33347 5.40903 5.50492 5.64070 5.68860 5.69297 5.92908 6.05999 6.08092 6.50187 6.74583 7.30675 8.86611 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.002484 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.930207 B =11267.763067 C =12319.109582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.056 4.056 3 C -0.140 4.140 4 C -0.121 4.121 5 C -0.085 4.085 6 C -0.161 4.161 7 C -0.092 4.092 8 C -0.216 4.216 9 C 0.111 3.889 10 O -0.323 6.323 11 C 0.053 3.947 12 C 0.107 3.893 13 N -1.109 6.109 14 S 2.624 3.376 15 O -1.001 7.001 16 O -0.994 6.994 17 C -0.588 4.588 18 C 0.019 3.981 19 C -0.537 4.537 20 H 0.075 0.925 21 C -0.005 4.005 22 N -0.935 5.935 23 Si 0.974 3.026 24 H -0.256 1.256 25 H -0.279 1.279 26 H -0.278 1.278 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.423 0.577 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.005 0.995 46 H 0.009 0.991 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.487 5.782 27.934 30.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.074 4.074 3 C -0.197 4.197 4 C -0.122 4.122 5 C -0.103 4.103 6 C -0.180 4.180 7 C -0.110 4.110 8 C -0.234 4.234 9 C 0.066 3.934 10 O -0.237 6.237 11 C -0.024 4.024 12 C -0.018 4.018 13 N -0.871 5.871 14 S 2.721 3.279 15 O -0.992 6.992 16 O -0.984 6.984 17 C -0.720 4.720 18 C -0.019 4.019 19 C -0.576 4.576 20 H 0.093 0.907 21 C -0.203 4.203 22 N -0.574 5.574 23 Si 0.797 3.203 24 H -0.179 1.179 25 H -0.205 1.205 26 H -0.203 1.203 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.109 0.891 42 H 0.259 0.741 43 H 0.163 0.837 44 H 0.158 0.842 45 H 0.023 0.977 46 H 0.027 0.973 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.496 5.625 27.410 29.549 hybrid contribution -0.569 -0.044 -0.853 1.026 sum -10.065 5.580 26.557 28.944 Atomic orbital electron populations 1.21811 0.93648 1.01604 1.02449 1.19976 0.96356 0.95982 0.95087 1.21831 1.00602 0.94829 1.02482 1.19447 1.00784 0.95639 0.96304 1.21060 0.98739 0.99736 0.90775 1.21356 1.00209 0.97032 0.99356 1.21249 0.96611 0.96050 0.97118 1.21501 1.05928 1.03430 0.92553 1.19065 0.95911 0.94245 0.84216 1.86054 1.66607 1.44786 1.26254 1.23125 0.95064 0.87464 0.96704 1.21692 0.96804 0.90639 0.92702 1.55277 1.69599 1.23618 1.38592 1.04334 0.76231 0.72795 0.74566 1.93502 1.73432 1.47285 1.84951 1.93498 1.70404 1.49658 1.84839 1.30339 1.18161 1.12391 1.11143 1.18830 0.96944 0.96165 0.90007 1.21548 0.93534 1.48728 0.93761 0.90656 1.26117 0.98610 0.94788 1.00813 1.70109 1.20550 1.49754 1.17011 0.85267 0.79011 0.77797 0.78187 1.17946 1.20474 1.20322 0.91542 0.92032 0.93415 0.91274 0.91485 0.93623 0.92014 0.84128 0.83971 0.83889 0.84090 0.90350 0.88068 0.87242 0.89114 0.74072 0.83710 0.84221 0.97665 0.97262 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.01 71.98 0.65 -1.44 16 2 C -0.06 -0.99 3.06 -11.54 -0.04 -1.03 16 3 C -0.14 -2.24 9.01 71.98 0.65 -1.59 16 4 C -0.12 -2.22 4.79 -19.77 -0.09 -2.31 16 5 C -0.09 -1.26 8.71 22.25 0.19 -1.07 16 6 C -0.16 -2.11 10.04 22.28 0.22 -1.89 16 7 C -0.09 -1.24 10.04 22.25 0.22 -1.02 16 8 C -0.22 -3.39 9.04 22.37 0.20 -3.19 16 9 C 0.11 2.13 6.66 22.51 0.15 2.28 16 10 O -0.32 -6.34 8.70 -92.44 -0.80 -7.15 16 11 C 0.05 0.79 4.93 71.98 0.36 1.15 16 12 C 0.11 1.96 6.52 86.38 0.56 2.52 16 13 N -1.11 -26.69 5.85 -187.48 -1.10 -27.78 16 14 S 2.62 91.33 5.46 -56.49 -0.31 91.02 16 15 O -1.00 -42.08 18.08 -127.65 -2.31 -44.39 16 16 O -0.99 -39.94 17.50 -127.65 -2.23 -42.17 16 17 C -0.59 -21.80 6.01 71.98 0.43 -21.37 16 18 C 0.02 1.01 4.98 29.85 0.15 1.16 16 19 C -0.54 -29.68 9.11 25.60 0.23 -29.45 16 20 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 21 C -0.01 -0.29 5.46 84.65 0.46 0.18 16 22 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 23 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 26 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 27 H 0.07 0.82 7.39 -2.39 -0.02 0.80 16 28 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 1.49 6.99 -2.38 -0.02 1.47 16 31 H 0.07 0.87 7.39 -2.39 -0.02 0.85 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.14 1.54 7.10 -2.91 -0.02 1.52 16 35 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 36 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.14 1.69 6.30 -2.91 -0.02 1.67 16 38 H 0.08 1.08 7.66 -2.39 -0.02 1.06 16 39 H 0.10 1.05 7.67 -2.39 -0.02 1.03 16 40 H 0.11 1.87 7.69 -2.39 -0.02 1.85 16 41 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.42 9.36 8.47 -96.74 -0.82 8.54 16 43 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 44 H 0.14 4.64 8.14 -2.39 -0.02 4.63 16 45 H 0.01 0.28 8.14 -2.39 -0.02 0.27 16 46 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 47 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -77.59 399.21 0.05 -77.54 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.14 Total: 21.27 kcal Atomic # 6 Polarization: -61.40 SS G_CDS: 4.35 Total: -57.05 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -0.81 Total: -84.44 kcal Atomic # 8 Polarization: -88.36 SS G_CDS: -5.35 Total: -93.70 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 91.33 SS G_CDS: -0.31 Total: 91.02 kcal Total: -77.59 0.05 -77.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111364171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.080 kcal (2) G-P(sol) polarization free energy of solvation -77.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds