Wall clock time and date at job start Sat Apr 11 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47294 * 2 1 4 4 C 1.52992 * 109.47453 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46954 * 304.99750 * 4 3 2 6 6 C 1.53000 * 109.47532 * 64.99817 * 4 3 2 7 7 C 1.53006 * 109.46966 * 60.09362 * 6 4 3 8 8 O 1.42895 * 109.47037 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.47482 * 185.00184 * 4 3 2 10 10 N 1.46502 * 109.47460 * 176.15948 * 9 4 3 11 11 S 1.65599 * 119.99693 * 164.11703 * 10 9 4 12 12 O 1.42099 * 106.39773 * 178.54150 * 11 10 9 13 13 O 1.42101 * 106.40292 * 311.45607 * 11 10 9 14 14 C 1.76201 * 107.21914 * 65.00086 * 11 10 9 15 15 C 1.38632 * 119.74784 * 269.72232 * 14 11 10 16 16 C 1.37621 * 120.24573 * 179.72500 * 15 14 11 17 17 C 1.40712 * 119.74263 * 0.56620 * 16 15 14 18 18 C 1.41396 * 120.24115 * 179.68242 * 17 16 15 19 19 H 1.08010 * 119.99897 * 159.56129 * 18 17 16 20 20 C 1.39950 * 120.00434 * 339.56206 * 18 17 16 21 21 N 1.30825 * 119.99529 * 326.41940 * 20 18 17 22 22 Si 1.86799 * 119.99909 * 146.41491 * 20 18 17 23 23 H 1.48499 * 109.46966 * 94.99545 * 22 20 18 24 24 H 1.48503 * 109.47023 * 214.99297 * 22 20 18 25 25 H 1.48493 * 109.47538 * 334.99293 * 22 20 18 26 26 C 1.40708 * 119.51510 * 359.71312 * 17 16 15 27 27 C 1.37621 * 119.74252 * 359.97438 * 26 17 16 28 28 H 1.09006 * 109.46710 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46923 * 299.99408 * 1 2 3 30 30 H 1.08995 * 109.47408 * 59.99922 * 1 2 3 31 31 H 1.08996 * 109.47718 * 120.00520 * 2 1 3 32 32 H 1.09003 * 109.46923 * 240.00592 * 2 1 3 33 33 H 1.09009 * 109.46836 * 300.00281 * 3 2 1 34 34 H 1.08996 * 109.46915 * 59.99793 * 3 2 1 35 35 H 1.08998 * 109.47276 * 180.09230 * 6 4 3 36 36 H 1.09002 * 109.47044 * 300.09685 * 6 4 3 37 37 H 1.08999 * 109.47187 * 299.99264 * 7 6 4 38 38 H 1.09004 * 109.46734 * 59.99066 * 7 6 4 39 39 H 0.96708 * 113.99826 * 179.97438 * 8 7 6 40 40 H 1.09006 * 109.47176 * 296.16255 * 9 4 3 41 41 H 1.09004 * 109.46961 * 56.15671 * 9 4 3 42 42 H 0.96993 * 119.99807 * 344.11348 * 10 9 4 43 43 H 1.07999 * 119.87820 * 359.97438 * 15 14 11 44 44 H 1.08000 * 120.12730 * 180.28389 * 16 15 14 45 45 H 0.96999 * 119.99585 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.13069 * 179.97438 * 26 17 16 47 47 H 1.08007 * 119.87583 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 1 3.9336 0.8530 0.8409 6 6 4.0795 0.8331 -1.3082 7 6 3.5709 1.6620 -2.4895 8 8 4.0473 1.0932 -3.7107 9 6 4.0800 2.8795 0.1251 10 7 5.5422 2.8725 0.2168 11 16 6.3941 4.2705 -0.0326 12 8 7.7641 3.9448 0.1577 13 8 5.8899 4.8388 -1.2335 14 6 5.9622 5.3827 1.2640 15 6 4.8947 6.2515 1.0980 16 6 4.5449 7.1205 2.1061 17 6 5.2830 7.1334 3.3041 18 6 4.9371 8.0266 4.3441 19 1 5.2613 7.8296 5.3554 20 6 4.1745 9.1660 4.0633 21 7 4.3130 9.7793 2.9160 22 14 2.9591 9.8111 5.3266 23 1 3.6045 10.8760 6.1357 24 1 1.7715 10.3690 4.6311 25 1 2.5350 8.7012 6.2173 26 6 6.3682 6.2512 3.4591 27 6 6.6959 5.3862 2.4402 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 5.1695 0.8316 -1.3080 36 1 3.7148 -0.1901 -1.3986 37 1 2.4809 1.6633 -2.4899 38 1 3.9355 2.6853 -2.3990 39 1 3.7625 1.5683 -4.5034 40 1 3.7736 3.4518 -0.7505 41 1 3.6619 3.3362 1.0222 42 1 6.0112 2.0490 0.4235 43 1 4.3329 6.2434 0.1757 44 1 3.7101 7.7933 1.9765 45 1 3.7842 10.5688 2.7213 46 1 6.9418 6.2529 4.3742 47 1 7.5283 4.7079 2.5570 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123814779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:30 Heat of formation + Delta-G solvation = -165.650182 kcal Electronic energy + Delta-G solvation = -27990.379680 eV Core-core repulsion = 24069.435405 eV Total energy + Delta-G solvation = -3920.944275 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.59235 -39.34876 -38.10817 -37.12882 -36.76720 -35.86799 -35.40113 -32.67988 -32.11760 -31.31179 -29.11551 -27.61314 -26.57155 -24.84395 -23.34214 -22.92827 -22.42643 -20.52988 -20.06640 -19.43993 -18.73124 -18.38661 -18.12715 -17.20435 -17.05801 -16.63478 -16.19753 -15.85611 -15.79633 -15.24402 -15.11104 -14.95355 -14.68075 -14.38292 -14.19985 -14.11627 -14.00701 -13.48234 -13.27948 -13.15913 -13.11672 -13.05825 -12.99288 -12.93589 -12.88204 -12.58506 -12.48085 -12.30217 -12.08901 -11.92804 -11.52296 -11.45845 -11.39107 -11.31005 -11.18420 -11.08877 -10.69835 -10.28207 -9.87736 -9.56043 -9.03750 -6.62141 -0.27197 0.52347 1.06496 1.32817 1.40979 1.53942 2.08828 2.24848 2.49213 2.95178 3.35291 3.50539 3.60479 3.76525 3.86981 4.02534 4.24422 4.30904 4.32215 4.36724 4.39831 4.46773 4.52800 4.65230 4.72897 4.78703 4.79360 4.84536 4.93269 4.97064 5.03972 5.08496 5.13527 5.20224 5.24047 5.25499 5.28646 5.42534 5.49727 5.51206 5.58519 5.61397 5.74673 5.90785 6.13231 6.22415 6.45579 6.65272 6.81700 6.88879 7.95166 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011421 B = 0.003171 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.028320 B = 8828.561301 C =10300.510483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.120 4.120 4 C -0.080 4.080 5 H 0.097 0.903 6 C -0.116 4.116 7 C 0.062 3.938 8 O -0.595 6.595 9 C 0.112 3.888 10 N -1.108 6.108 11 S 2.724 3.276 12 O -1.008 7.008 13 O -1.005 7.005 14 C -0.808 4.808 15 C -0.012 4.012 16 C -0.221 4.221 17 C 0.111 3.889 18 C -0.467 4.467 19 H 0.094 0.906 20 C 0.047 3.953 21 N -0.774 5.774 22 Si 0.983 3.017 23 H -0.256 1.256 24 H -0.260 1.260 25 H -0.253 1.253 26 C -0.264 4.264 27 C 0.002 3.998 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.394 0.606 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.423 0.577 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.303 0.697 46 H 0.108 0.892 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.303 -13.927 -4.025 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.100 4.100 5 H 0.115 0.885 6 C -0.153 4.153 7 C -0.015 4.015 8 O -0.403 6.403 9 C -0.014 4.014 10 N -0.869 5.869 11 S 2.820 3.180 12 O -0.998 6.998 13 O -0.995 6.995 14 C -0.901 4.901 15 C -0.031 4.031 16 C -0.241 4.241 17 C 0.108 3.892 18 C -0.492 4.492 19 H 0.112 0.888 20 C -0.177 4.177 21 N -0.395 5.395 22 Si 0.801 3.199 23 H -0.180 1.180 24 H -0.184 1.184 25 H -0.176 1.176 26 C -0.284 4.284 27 C -0.018 4.018 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.243 0.757 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.259 0.741 43 H 0.133 0.867 44 H 0.118 0.882 45 H 0.115 0.885 46 H 0.126 0.874 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.578 -13.829 -4.551 16.898 hybrid contribution -0.525 1.109 0.697 1.411 sum -9.103 -12.720 -3.855 16.110 Atomic orbital electron populations 1.21779 0.95633 1.01852 1.01826 1.21538 0.95990 0.95961 1.02435 1.21717 0.92946 0.98097 1.03018 1.21301 0.96549 0.93948 0.98160 0.88458 1.21547 1.01184 1.00096 0.92503 1.22485 0.98392 0.96209 0.84427 1.86387 1.78451 1.58357 1.17113 1.21568 0.78239 0.99439 1.02122 1.55253 1.16325 1.25818 1.89486 1.00238 0.71759 0.72708 0.73297 1.93453 1.34192 1.84625 1.87556 1.93446 1.81475 1.78736 1.45821 1.29513 1.16026 1.25810 1.18720 1.20372 0.93438 0.92637 0.96701 1.21104 1.03258 1.03476 0.96270 1.18083 0.88668 0.90386 0.92085 1.20200 1.27896 1.04645 0.96447 0.88782 1.27053 0.97011 0.95377 0.98223 1.69920 1.30843 1.13974 1.24767 0.85184 0.77305 0.79137 0.78250 1.18044 1.18441 1.17623 1.21167 1.01778 1.04877 1.00587 1.20412 0.94950 0.95007 0.91405 0.92330 0.92830 0.92778 0.91590 0.91610 0.91192 0.91186 0.92059 0.89862 0.91667 0.94297 0.75686 0.90917 0.91348 0.74075 0.86700 0.88187 0.88524 0.87358 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.21 16 2 C -0.12 -1.61 5.69 30.59 0.17 -1.44 16 3 C -0.12 -1.84 4.47 30.59 0.14 -1.70 16 4 C -0.08 -1.41 2.20 -10.80 -0.02 -1.43 16 5 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 6 C -0.12 -2.22 4.99 30.60 0.15 -2.06 16 7 C 0.06 1.28 6.36 71.98 0.46 1.73 16 8 O -0.59 -12.91 13.66 -148.98 -2.03 -14.94 16 9 C 0.11 2.70 5.38 86.38 0.47 3.17 16 10 N -1.11 -30.34 5.49 -187.48 -1.03 -31.37 16 11 S 2.72 102.71 5.73 -56.49 -0.32 102.39 16 12 O -1.01 -42.34 17.26 -128.00 -2.21 -44.55 16 13 O -1.00 -42.20 16.71 -128.00 -2.14 -44.34 16 14 C -0.81 -35.30 5.97 22.46 0.13 -35.16 16 15 C -0.01 -0.53 9.49 22.22 0.21 -0.32 16 16 C -0.22 -11.13 8.81 22.73 0.20 -10.93 16 17 C 0.11 5.72 5.59 -21.29 -0.12 5.60 16 18 C -0.47 -22.99 8.95 23.46 0.21 -22.78 16 19 H 0.09 4.39 8.03 -2.91 -0.02 4.36 16 20 C 0.05 2.14 4.76 85.26 0.41 2.54 16 21 N -0.77 -36.80 11.77 21.83 0.26 -36.55 16 22 Si 0.98 33.22 29.67 68.60 2.04 35.25 16 23 H -0.26 -8.26 7.11 99.48 0.71 -7.55 16 24 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16 25 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 26 C -0.26 -12.70 9.80 22.73 0.22 -12.47 16 27 C 0.00 0.09 9.49 22.22 0.21 0.30 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.87 6.56 -2.39 -0.02 0.85 16 33 H 0.07 1.05 6.18 -2.38 -0.01 1.04 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.31 7.48 -2.39 -0.02 1.29 16 36 H 0.08 1.41 6.56 -2.39 -0.02 1.40 16 37 H 0.07 1.08 6.32 -2.39 -0.02 1.07 16 38 H 0.04 0.94 6.34 -2.38 -0.02 0.92 16 39 H 0.39 5.27 9.12 -74.05 -0.68 4.60 16 40 H 0.07 1.85 5.82 -2.38 -0.01 1.83 16 41 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.42 9.45 8.33 -96.75 -0.81 8.64 16 43 H 0.12 4.84 7.59 -2.91 -0.02 4.82 16 44 H 0.10 5.08 6.47 -2.91 -0.02 5.06 16 45 H 0.30 12.63 8.30 -92.71 -0.77 11.86 16 46 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 47 H 0.12 4.87 7.60 -2.91 -0.02 4.85 16 Total: -1.00 -66.43 389.22 -2.38 -68.81 By element: Atomic # 1 Polarization: 41.94 SS G_CDS: -0.48 Total: 41.46 kcal Atomic # 6 Polarization: -79.71 SS G_CDS: 3.55 Total: -76.16 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: -0.77 Total: -67.92 kcal Atomic # 8 Polarization: -97.45 SS G_CDS: -6.38 Total: -103.83 kcal Atomic # 14 Polarization: 33.22 SS G_CDS: 2.04 Total: 35.25 kcal Atomic # 16 Polarization: 102.71 SS G_CDS: -0.32 Total: 102.39 kcal Total: -66.43 -2.38 -68.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123814779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.844 kcal (2) G-P(sol) polarization free energy of solvation -66.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds