Wall clock time and date at job start Sat Apr 11 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46893 * 2 1 4 4 C 1.53000 * 109.47255 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47197 * 180.02562 * 4 3 2 6 6 N 1.46508 * 109.47083 * 180.02562 * 5 4 3 7 7 C 1.46494 * 120.00214 * 84.99711 * 6 5 4 8 8 C 1.52999 * 109.47240 * 84.99768 * 7 6 5 9 9 O 1.42901 * 109.46994 * 65.00212 * 8 7 6 10 10 S 1.65597 * 119.99683 * 265.27153 * 6 5 4 11 11 O 1.42105 * 106.40221 * 23.26853 * 10 6 5 12 12 O 1.42103 * 106.40174 * 156.18178 * 10 6 5 13 13 C 1.76195 * 107.22108 * 269.72478 * 10 6 5 14 14 C 1.38639 * 119.74996 * 269.73220 * 13 10 6 15 15 C 1.37612 * 120.24946 * 179.72275 * 14 13 10 16 16 C 1.40720 * 119.74288 * 0.56607 * 15 14 13 17 17 C 1.41398 * 120.24431 * 179.68552 * 16 15 14 18 18 H 1.08003 * 119.99940 * 335.24718 * 17 16 15 19 19 C 1.39945 * 119.99962 * 155.24423 * 17 16 15 20 20 N 1.30819 * 120.00109 * 342.29715 * 19 17 16 21 21 Si 1.86803 * 119.99878 * 162.29307 * 19 17 16 22 22 H 1.48505 * 109.46899 * 90.00209 * 21 19 17 23 23 H 1.48495 * 109.47073 * 210.00168 * 21 19 17 24 24 H 1.48504 * 109.47081 * 330.00299 * 21 19 17 25 25 C 1.40716 * 119.51298 * 359.70443 * 16 15 14 26 26 C 1.37621 * 119.74415 * 0.02562 * 25 16 15 27 27 H 1.09005 * 109.46885 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47322 * 299.99863 * 1 2 3 29 29 H 1.08999 * 109.46979 * 60.00145 * 1 2 3 30 30 H 1.08997 * 109.47322 * 240.00137 * 2 1 3 31 31 H 1.08999 * 109.46979 * 119.99855 * 2 1 3 32 32 H 1.08997 * 109.47024 * 59.99955 * 3 2 1 33 33 H 1.08999 * 109.47189 * 299.99727 * 3 2 1 34 34 H 1.09004 * 109.46932 * 59.99682 * 4 3 2 35 35 H 1.09010 * 109.47141 * 300.00473 * 4 3 2 36 36 H 1.08997 * 109.47227 * 59.99967 * 5 4 3 37 37 H 1.08999 * 109.47044 * 299.99703 * 5 4 3 38 38 H 1.08998 * 109.47478 * 205.00086 * 7 6 5 39 39 H 1.09001 * 109.47064 * 325.00225 * 7 6 5 40 40 H 1.09003 * 109.47488 * 185.00016 * 8 7 6 41 41 H 1.09000 * 109.47303 * 305.00724 * 8 7 6 42 42 H 0.96700 * 114.00627 * 180.02562 * 9 8 7 43 43 H 1.08000 * 119.87327 * 359.97135 * 14 13 10 44 44 H 1.08000 * 120.13059 * 180.27394 * 15 14 13 45 45 H 0.97001 * 120.00143 * 179.97438 * 20 19 17 46 46 H 1.07993 * 120.12810 * 179.97438 * 25 16 15 47 47 H 1.07995 * 119.87363 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 6 4.0799 2.8851 0.0013 6 7 5.5449 2.8852 0.0013 7 6 6.2775 2.7752 -1.2626 8 6 6.4235 4.1629 -1.8899 9 8 7.2397 4.9818 -1.0500 10 16 6.3728 3.0028 1.4306 11 8 5.4889 2.5459 2.4451 12 8 7.6535 2.4316 1.2007 13 6 6.6406 4.7168 1.7389 14 6 7.7902 5.3297 1.2647 15 6 8.0070 6.6690 1.4946 16 6 7.0621 7.4140 2.2243 17 6 7.2774 8.7893 2.4724 18 1 8.2817 9.1865 2.4769 19 6 6.1891 9.6358 2.7122 20 7 4.9820 9.2609 2.3748 21 14 6.4600 11.3011 3.5141 22 1 6.7046 12.3222 2.4639 23 1 5.2550 11.6752 4.2972 24 1 7.6357 11.2296 4.4185 25 6 5.9016 6.7802 2.7055 26 6 5.7029 5.4409 2.4589 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9337 0.9287 -0.8891 35 1 3.9330 0.9289 0.8909 36 1 3.7161 3.3987 0.8912 37 1 3.7169 3.3992 -0.8887 38 1 7.2657 2.3556 -1.0745 39 1 5.7301 2.1241 -1.9443 40 1 6.8893 4.0710 -2.8711 41 1 5.4393 4.6191 -1.9962 42 1 7.3751 5.8783 -1.3864 43 1 8.5164 4.7547 0.7094 44 1 8.9011 7.1455 1.1206 45 1 4.2276 9.8475 2.5413 46 1 5.1701 7.3423 3.2670 47 1 4.8132 4.9523 2.8276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158711456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:46 Heat of formation + Delta-G solvation = -129.262911 kcal Electronic energy + Delta-G solvation = -28760.082154 eV Core-core repulsion = 24840.715750 eV Total energy + Delta-G solvation = -3919.366405 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -37.69220 -37.38539 -36.64103 -35.97913 -35.00705 -34.67837 -33.89895 -31.17170 -30.10898 -29.30797 -28.50066 -25.68636 -25.52040 -22.69248 -21.62742 -21.14376 -20.97658 -20.95031 -18.22581 -17.51003 -17.35399 -17.03046 -16.37463 -15.82675 -15.57467 -15.34806 -14.64705 -14.23417 -14.01412 -13.87465 -13.79858 -13.50430 -13.22012 -13.17185 -12.97497 -12.39987 -12.26430 -12.11685 -12.02778 -11.84097 -11.66155 -11.47219 -11.34673 -11.33986 -11.16638 -11.13252 -11.07797 -11.02623 -10.83825 -10.74026 -10.63523 -10.40873 -10.31983 -9.68703 -9.54524 -9.46798 -9.36547 -8.58849 -7.79002 -7.45224 -7.03769 -4.68109 1.36603 2.41853 2.92616 2.94210 3.01068 3.09670 3.66712 3.73074 4.33647 4.52278 4.70029 4.81316 4.85498 5.01130 5.05072 5.17899 5.29964 5.34941 5.43543 5.46600 5.54009 5.56343 5.59400 5.67552 5.72942 5.83065 5.86264 5.90631 5.98821 6.01978 6.15852 6.23671 6.25088 6.36752 6.40972 6.47378 6.79421 6.82574 6.95625 7.16157 7.22925 7.50223 7.59749 7.80143 7.90978 8.01727 8.11986 8.45176 8.64990 8.80118 9.87635 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013079 B = 0.003367 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.252751 B = 8312.941134 C = 9278.450456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.141 4.141 5 C 0.129 3.871 6 N -0.998 5.998 7 C 0.121 3.879 8 C 0.050 3.950 9 O -0.549 6.549 10 S 2.692 3.308 11 O -0.987 6.987 12 O -0.986 6.986 13 C -0.769 4.769 14 C 0.051 3.949 15 C -0.254 4.254 16 C 0.144 3.856 17 C -0.444 4.444 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.772 5.772 21 Si 0.912 3.088 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.258 1.258 25 C -0.186 4.186 26 C -0.019 4.019 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.378 0.622 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.286 0.714 46 H 0.118 0.882 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.488 -8.626 -8.749 13.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.180 4.180 5 C 0.003 3.997 6 N -0.832 5.832 7 C -0.005 4.005 8 C -0.030 4.030 9 O -0.355 6.355 10 S 2.793 3.207 11 O -0.978 6.978 12 O -0.977 6.977 13 C -0.865 4.865 14 C 0.031 3.969 15 C -0.275 4.275 16 C 0.141 3.859 17 C -0.472 4.472 18 H 0.102 0.898 19 C -0.147 4.147 20 N -0.395 5.395 21 Si 0.736 3.264 22 H -0.192 1.192 23 H -0.198 1.198 24 H -0.181 1.181 25 C -0.206 4.206 26 C -0.040 4.040 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.226 0.774 43 H 0.126 0.874 44 H 0.113 0.887 45 H 0.097 0.903 46 H 0.136 0.864 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.493 -9.868 -7.925 13.797 hybrid contribution -0.225 2.159 -0.382 2.204 sum -5.718 -7.709 -8.307 12.694 Atomic orbital electron populations 1.21781 0.96084 1.01324 1.01810 1.21530 0.95621 0.97118 1.01977 1.21551 0.95054 0.96749 1.02287 1.22075 0.95437 0.97822 1.02667 1.21165 0.79098 0.96336 1.03124 1.57694 1.14004 1.89372 1.22087 1.21312 0.97866 0.95431 0.85909 1.22629 0.94610 0.92773 0.92938 1.86820 1.71677 1.27545 1.49473 1.01309 0.72210 0.75569 0.71654 1.93468 1.66684 1.81761 1.55863 1.93443 1.40615 1.78301 1.85305 1.29074 1.08011 1.23006 1.26438 1.20002 0.92705 0.93970 0.90231 1.20989 1.02644 0.94519 1.09328 1.17811 0.90371 0.92566 0.85174 1.19864 0.94396 0.93006 1.39888 0.89779 1.26073 0.94482 1.01170 0.92943 1.69826 1.00299 1.37327 1.32046 0.86233 0.79516 0.80605 0.80060 1.19213 1.19791 1.18143 1.21262 1.00786 0.92891 1.05686 1.20233 0.95176 0.94430 0.94135 0.93036 0.92662 0.92885 0.92255 0.91929 0.91530 0.92015 0.91941 0.91129 0.90056 0.91065 0.88649 0.89720 0.93674 0.93707 0.77439 0.87379 0.88696 0.90306 0.86387 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.16 5.93 -26.73 -0.16 -1.32 16 3 C -0.12 -1.22 5.21 -26.73 -0.14 -1.36 16 4 C -0.14 -1.70 5.54 -26.73 -0.15 -1.85 16 5 C 0.13 1.77 5.34 -4.04 -0.02 1.75 16 6 N -1.00 -15.74 2.73 -114.38 -0.31 -16.05 16 7 C 0.12 1.59 6.07 -4.05 -0.02 1.57 16 8 C 0.05 0.63 7.39 37.16 0.27 0.90 16 9 O -0.55 -8.54 8.44 -35.23 -0.30 -8.84 16 10 S 2.69 54.65 5.52 -107.50 -0.59 54.06 16 11 O -0.99 -21.75 16.23 -57.17 -0.93 -22.68 16 12 O -0.99 -21.80 15.80 -57.17 -0.90 -22.70 16 13 C -0.77 -17.29 5.47 -39.29 -0.21 -17.50 16 14 C 0.05 1.14 6.37 -39.66 -0.25 0.89 16 15 C -0.25 -5.95 9.80 -38.87 -0.38 -6.33 16 16 C 0.14 3.66 5.57 -106.82 -0.60 3.07 16 17 C -0.44 -10.99 9.05 -37.74 -0.34 -11.34 16 18 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 19 C 0.07 1.73 5.14 -17.34 -0.09 1.65 16 20 N -0.77 -18.50 10.97 55.55 0.61 -17.89 16 21 Si 0.91 17.33 29.59 -169.99 -5.03 12.30 16 22 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 25 C -0.19 -4.71 8.70 -38.87 -0.34 -5.05 16 26 C -0.02 -0.46 9.49 -39.66 -0.38 -0.84 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 36 H 0.08 1.23 7.61 -51.93 -0.40 0.83 16 37 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 38 H 0.10 1.37 6.91 -51.93 -0.36 1.01 16 39 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 42 H 0.38 4.99 9.12 45.56 0.42 5.41 16 43 H 0.11 2.30 6.73 -52.49 -0.35 1.95 16 44 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 45 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 46 H 0.12 3.05 6.18 -52.49 -0.32 2.73 16 47 H 0.10 2.15 7.60 -52.49 -0.40 1.75 16 LS Contribution 389.65 15.07 5.87 5.87 Total: -1.00 -30.22 389.65 -10.89 -41.12 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -6.87 Total: 11.46 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: -2.44 Total: -36.65 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.30 Total: -33.95 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -2.13 Total: -54.21 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Atomic # 16 Polarization: 54.65 SS G_CDS: -0.59 Total: 54.06 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.22 -10.89 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158711456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.146 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds