Wall clock time and date at job start Sat Apr 11 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46846 * 2 1 4 4 C 1.50697 * 109.47171 * 119.99771 * 2 1 3 5 5 C 1.36210 * 120.04137 * 120.31521 * 4 2 1 6 6 C 1.41022 * 118.59005 * 180.22347 * 5 4 2 7 7 O 1.21986 * 120.70457 * 179.74357 * 6 5 4 8 8 N 1.35022 * 118.58264 * 359.47079 * 6 5 4 9 9 C 1.46502 * 120.04155 * 180.25659 * 8 6 5 10 10 C 1.50693 * 109.47331 * 89.99736 * 9 8 6 11 11 O 1.21280 * 119.99967 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.39241 * 120.00163 * 175.71100 * 12 10 9 14 14 C 1.39474 * 119.83338 * 215.01575 * 13 12 10 15 15 C 1.36383 * 120.16896 * 179.71713 * 14 13 12 16 16 C 1.40867 * 119.82243 * 0.57178 * 15 14 13 17 17 C 1.41155 * 120.16218 * 179.67561 * 16 15 14 18 18 H 1.08000 * 120.00202 * 214.80785 * 17 16 15 19 19 C 1.39909 * 119.99545 * 34.80165 * 17 16 15 20 20 N 1.30863 * 120.00217 * 355.56826 * 19 17 16 21 21 Si 1.86803 * 119.99723 * 175.55550 * 19 17 16 22 22 H 1.48499 * 109.47058 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46656 * 120.00558 * 21 19 17 24 24 H 1.48494 * 109.47276 * 240.00303 * 21 19 17 25 25 C 1.40870 * 119.67850 * 359.70189 * 16 15 14 26 26 C 1.36373 * 119.82356 * 0.02562 * 25 16 15 27 27 C 1.34749 * 119.91913 * 0.27787 * 8 6 5 28 28 N 1.30639 * 121.48730 * 359.97174 * 27 8 6 29 29 H 1.09004 * 109.47100 * 299.99532 * 1 2 3 30 30 H 1.09001 * 109.47181 * 60.00077 * 1 2 3 31 31 H 1.08996 * 109.46764 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47256 * 240.00154 * 2 1 3 33 33 H 1.09000 * 109.46670 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47292 * 300.00186 * 3 2 1 35 35 H 1.09004 * 109.46888 * 60.00339 * 3 2 1 36 36 H 1.07993 * 120.70295 * 359.97174 * 5 4 2 37 37 H 1.09005 * 109.46875 * 210.00345 * 9 8 6 38 38 H 1.09003 * 109.46894 * 329.99655 * 9 8 6 39 39 H 0.97000 * 120.00167 * 355.70394 * 12 10 9 40 40 H 1.08006 * 119.91575 * 359.97438 * 14 13 12 41 41 H 1.07998 * 120.08725 * 180.25306 * 15 14 13 42 42 H 0.97008 * 120.00054 * 179.97438 * 20 19 17 43 43 H 1.07998 * 120.08925 * 179.97438 * 25 16 15 44 44 H 1.08007 * 119.91717 * 180.02562 * 26 25 16 45 45 H 1.07998 * 119.25468 * 180.02562 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8208 -1.8141 1.1065 6 6 3.2698 -2.4577 2.2782 7 8 3.9737 -3.4518 2.2121 8 7 2.9085 -1.9469 3.4747 9 6 3.3616 -2.5867 4.7123 10 6 4.6767 -1.9854 5.1364 11 8 5.1852 -1.1084 4.4707 12 7 5.2878 -2.4222 6.2554 13 6 6.5444 -1.9310 6.5996 14 6 7.4721 -2.7698 7.2170 15 6 8.7069 -2.2973 7.5517 16 6 9.0399 -0.9552 7.2833 17 6 10.3135 -0.4569 7.6329 18 1 10.4208 0.5648 7.9661 19 6 11.4367 -1.2867 7.5479 20 7 11.2960 -2.5478 7.2281 21 14 13.1375 -0.5942 7.8906 22 1 13.0260 0.8476 8.2285 23 1 13.7483 -1.3237 9.0307 24 1 13.9899 -0.7561 6.6856 25 6 8.0956 -0.1126 6.6646 26 6 6.8669 -0.6009 6.3307 27 6 2.1304 -0.8482 3.5292 28 7 1.7104 -0.2550 2.4436 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8901 36 1 3.0928 -2.1907 0.1316 37 1 2.6202 -2.4286 5.4956 38 1 3.4888 -3.6560 4.5430 39 1 4.8521 -3.0788 6.8212 40 1 7.2133 -3.7972 7.4267 41 1 9.4256 -2.9491 8.0260 42 1 12.0748 -3.1230 7.1688 43 1 8.3438 0.9176 6.4561 44 1 6.1419 0.0438 5.8559 45 1 1.8482 -0.4485 4.4919 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160684368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:48 Heat of formation + Delta-G solvation = -8.927846 kcal Electronic energy + Delta-G solvation = -28455.828715 eV Core-core repulsion = 24438.529230 eV Total energy + Delta-G solvation = -4017.299485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.04063 -39.74400 -38.08400 -37.38240 -36.41620 -34.57433 -33.92789 -33.00735 -30.96840 -29.78633 -29.47042 -28.16135 -27.38644 -25.18907 -24.74899 -24.03599 -21.81118 -21.01584 -20.80702 -19.91755 -18.36173 -17.81019 -17.52965 -17.22114 -16.85226 -16.14147 -15.58711 -15.26843 -15.13288 -14.98812 -14.69823 -14.12815 -14.00843 -13.90231 -13.64578 -13.54274 -13.26024 -12.85650 -12.71738 -12.48935 -12.33393 -12.17179 -11.87586 -11.75952 -11.54332 -11.43417 -11.22057 -11.20829 -11.02469 -10.80497 -10.67050 -10.27286 -10.08821 -10.04088 -9.56159 -9.53354 -9.23655 -8.98133 -8.57390 -7.60817 -6.94484 -6.66206 -4.39266 0.47378 1.76661 2.16789 2.39578 2.89064 3.03762 3.07804 3.12956 3.18322 3.37322 3.65528 3.75669 3.95098 4.15870 4.36045 4.49357 4.65264 4.71952 4.81109 4.82933 4.88437 5.04612 5.25627 5.35965 5.41258 5.52237 5.59691 5.61360 5.66044 5.73591 5.97002 6.02918 6.13174 6.20924 6.35544 6.45008 6.64032 6.81887 7.00550 7.12617 7.23207 7.57570 7.61367 7.63595 7.74112 7.78221 8.00445 8.14094 8.25484 8.49906 8.61434 8.88064 8.93452 10.24815 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019504 B = 0.002190 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.243800 B =12780.220640 C =13327.752253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 C -0.142 4.142 4 C 0.185 3.815 5 C -0.287 4.287 6 C 0.525 3.475 7 O -0.534 6.534 8 N -0.504 5.504 9 C 0.069 3.931 10 C 0.485 3.515 11 O -0.518 6.518 12 N -0.642 5.642 13 C -0.002 4.002 14 C -0.117 4.117 15 C -0.142 4.142 16 C 0.101 3.899 17 C -0.459 4.459 18 H 0.077 0.923 19 C 0.068 3.932 20 N -0.809 5.809 21 Si 0.916 3.084 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.207 4.207 26 C -0.083 4.083 27 C 0.387 3.613 28 N -0.536 5.536 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.152 0.848 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.398 0.602 40 H 0.092 0.908 41 H 0.133 0.867 42 H 0.278 0.722 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.044 1.158 -6.471 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.067 4.067 3 C -0.199 4.199 4 C 0.065 3.935 5 C -0.311 4.311 6 C 0.325 3.675 7 O -0.411 6.411 8 N -0.221 5.221 9 C -0.057 4.057 10 C 0.269 3.731 11 O -0.394 6.394 12 N -0.285 5.285 13 C -0.094 4.094 14 C -0.137 4.137 15 C -0.162 4.162 16 C 0.099 3.901 17 C -0.490 4.490 18 H 0.095 0.905 19 C -0.147 4.147 20 N -0.436 5.436 21 Si 0.741 3.259 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.227 4.227 26 C -0.103 4.103 27 C 0.103 3.897 28 N -0.258 5.258 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.170 0.830 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.232 0.768 40 H 0.110 0.890 41 H 0.151 0.849 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.123 0.877 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -20.541 1.571 -7.187 21.818 hybrid contribution 1.263 -0.913 0.285 1.585 sum -19.277 0.658 -6.902 20.486 Atomic orbital electron populations 1.21762 0.93252 1.01985 1.02703 1.20186 0.96884 0.96717 0.92877 1.21776 1.01285 0.94225 1.02651 1.21118 0.89120 0.90320 0.92918 1.22705 1.07637 1.01453 0.99320 1.17255 0.81677 0.85571 0.83038 1.90968 1.38019 1.26328 1.85799 1.46353 1.41207 1.25270 1.09261 1.21869 0.96612 1.01144 0.86115 1.20481 0.86799 0.84387 0.81433 1.90755 1.65212 1.30187 1.53248 1.42837 1.18613 1.43742 1.23329 1.17221 0.85526 0.93673 1.12962 1.20318 0.94165 0.96667 1.02581 1.21205 0.94162 0.97635 1.03184 1.17751 0.92208 0.91844 0.88330 1.19552 0.91381 0.98581 1.39455 0.90477 1.25907 1.01606 0.94433 0.92734 1.69763 1.32087 1.05257 1.36537 0.86130 0.81045 0.80112 0.78608 1.18546 1.19950 1.19939 1.20803 0.95349 0.99817 1.06694 1.20351 0.97157 0.93052 0.99693 1.24930 0.83753 0.81295 0.99707 1.68120 1.28921 1.31357 0.97366 0.91352 0.92029 0.92836 0.89457 0.92553 0.92017 0.91325 0.83005 0.85761 0.85212 0.76844 0.88959 0.84944 0.91095 0.88554 0.87659 0.78102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.10 37.16 0.34 -0.64 16 2 C -0.05 -0.40 3.17 -91.77 -0.29 -0.69 16 3 C -0.14 -1.19 9.10 37.16 0.34 -0.85 16 4 C 0.18 2.06 5.43 -82.59 -0.45 1.61 16 5 C -0.29 -3.75 9.68 -39.26 -0.38 -4.13 16 6 C 0.52 8.12 7.45 -15.09 -0.11 8.01 16 7 O -0.53 -10.27 16.78 4.93 0.08 -10.18 16 8 N -0.50 -6.13 2.06 -122.40 -0.25 -6.38 16 9 C 0.07 0.72 5.86 -5.20 -0.03 0.69 16 10 C 0.48 7.76 7.73 -10.99 -0.08 7.68 16 11 O -0.52 -10.86 13.85 5.56 0.08 -10.79 16 12 N -0.64 -10.33 5.30 -9.74 -0.05 -10.38 16 13 C 0.00 -0.04 6.31 -83.57 -0.53 -0.56 16 14 C -0.12 -2.63 9.90 -39.79 -0.39 -3.02 16 15 C -0.14 -3.62 8.62 -39.26 -0.34 -3.96 16 16 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 17 C -0.46 -12.21 9.02 -37.85 -0.34 -12.55 16 18 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 19 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 20 N -0.81 -21.12 10.60 55.55 0.59 -20.53 16 21 Si 0.92 19.02 29.56 -169.99 -5.03 14.00 16 22 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 C -0.21 -5.20 9.74 -39.26 -0.38 -5.59 16 26 C -0.08 -1.94 8.61 -39.79 -0.34 -2.28 16 27 C 0.39 3.77 11.48 -90.53 -1.04 2.73 16 28 N -0.54 -5.78 9.93 -10.70 -0.11 -5.89 16 29 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.65 7.87 -51.93 -0.41 0.24 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 36 H 0.15 1.80 7.95 -52.49 -0.42 1.38 16 37 H 0.12 0.60 8.02 -51.93 -0.42 0.18 16 38 H 0.13 1.33 7.46 -51.93 -0.39 0.94 16 39 H 0.40 4.61 8.82 -40.82 -0.36 4.25 16 40 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.13 3.49 6.13 -52.49 -0.32 3.17 16 42 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 43 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 44 H 0.11 2.42 6.22 -52.48 -0.33 2.09 16 45 H 0.20 1.07 8.03 -52.49 -0.42 0.65 16 LS Contribution 382.99 15.07 5.77 5.77 Total: -1.00 -35.66 382.99 -9.62 -45.28 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.98 Total: 8.91 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -4.72 Total: -9.81 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.18 Total: -43.18 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.16 Total: -20.97 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.66 -9.62 -45.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160684368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.352 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds