Wall clock time and date at job start Sat Apr 11 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47124 * 2 1 4 4 C 1.53002 * 109.46907 * 240.00269 * 2 1 3 5 5 C 1.52995 * 109.47236 * 120.00130 * 2 1 3 6 6 C 1.53006 * 109.47170 * 59.99898 * 5 2 1 7 7 S 1.81397 * 109.47247 * 179.97438 * 6 5 2 8 8 O 1.42097 * 110.54137 * 68.37407 * 7 6 5 9 9 O 1.42098 * 110.54351 * 291.62664 * 7 6 5 10 10 N 1.65592 * 104.44891 * 179.97438 * 7 6 5 11 11 C 1.46508 * 120.00163 * 65.00085 * 10 7 6 12 12 C 1.50695 * 109.47103 * 164.99854 * 11 10 7 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47517 * 59.99414 * 21 19 17 23 23 H 1.48505 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46989 * 299.99567 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09000 * 109.47050 * 300.00172 * 1 2 3 28 28 H 1.09003 * 109.47542 * 59.99701 * 1 2 3 29 29 H 1.09002 * 109.47533 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46554 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47008 * 299.99832 * 3 2 1 32 32 H 1.08998 * 109.46635 * 60.00314 * 3 2 1 33 33 H 1.08996 * 109.47012 * 299.99601 * 4 2 1 34 34 H 1.08998 * 109.47504 * 60.00447 * 4 2 1 35 35 H 1.09009 * 109.47095 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47372 * 299.99724 * 5 2 1 37 37 H 1.09003 * 109.47376 * 179.97438 * 5 2 1 38 38 H 1.08998 * 109.46635 * 59.99857 * 6 5 2 39 39 H 1.08992 * 109.47010 * 300.00129 * 6 5 2 40 40 H 0.97000 * 120.00403 * 244.99795 * 10 7 6 41 41 H 1.08998 * 109.46632 * 45.00210 * 11 10 7 42 42 H 1.08996 * 109.47144 * 284.99941 * 11 10 7 43 43 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 44 44 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 45 45 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 46 46 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 47 47 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0399 -0.7212 1.2492 6 6 1.5299 -2.1638 1.2492 7 16 2.1352 -3.0192 2.7299 8 8 1.5232 -2.4887 3.8974 9 8 3.5426 -3.2027 2.6594 10 7 1.5164 -4.5500 2.6047 11 6 1.9446 -5.4262 1.5113 12 6 1.5414 -6.8455 1.8176 13 6 0.3087 -7.3171 1.4045 14 6 -0.0636 -8.6175 1.6832 15 6 0.8012 -9.4517 2.3796 16 8 0.4384 -10.7305 2.6546 17 6 -0.7236 -11.1643 2.1260 18 1 -1.3589 -10.4799 1.5835 19 6 -1.1031 -12.4892 2.2789 20 7 -0.3291 -13.3231 2.9394 21 14 -2.7126 -13.0903 1.5459 22 1 -2.6917 -12.8906 0.0746 23 1 -2.8848 -14.5343 1.8466 24 1 -3.8408 -12.3239 2.1334 25 6 2.0358 -8.9733 2.7987 26 6 2.4045 -7.6736 2.5118 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 1.6767 -0.2074 2.1392 37 1 3.1300 -0.7217 1.2490 38 1 1.8932 -2.6775 0.3592 39 1 0.4400 -2.1638 1.2492 40 1 0.8704 -4.8668 3.2552 41 1 3.0280 -5.3712 1.4048 42 1 1.4715 -5.1064 0.5829 43 1 -0.3633 -6.6681 0.8626 44 1 -1.0262 -8.9852 1.3600 45 1 -0.5947 -14.2498 3.0467 46 1 2.7086 -9.6182 3.3443 47 1 3.3663 -7.3023 2.8335 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172097423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:53 Heat of formation + Delta-G solvation = -98.333587 kcal Electronic energy + Delta-G solvation = -26981.706610 eV Core-core repulsion = 23063.681401 eV Total energy + Delta-G solvation = -3918.025209 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.18879 -38.50918 -37.27116 -37.00519 -36.02256 -34.67825 -32.35051 -31.64421 -30.27971 -29.51723 -27.72342 -27.70202 -25.79957 -24.53769 -24.53417 -22.06217 -20.71144 -19.51891 -19.12075 -18.10101 -17.73040 -17.15019 -16.73136 -16.38363 -15.51912 -15.14203 -14.92071 -14.80031 -14.59189 -14.28331 -14.25534 -14.05607 -13.75581 -13.66154 -13.18194 -13.02122 -12.79607 -12.54129 -12.41764 -12.37574 -12.22606 -12.16758 -12.11009 -12.05861 -11.72373 -11.70884 -11.59845 -11.32539 -11.06704 -11.02909 -10.87197 -10.79967 -10.72668 -10.59056 -10.50126 -9.49923 -9.39518 -8.91399 -8.28440 -7.32586 -6.53021 -4.11944 0.13421 2.06694 2.13176 2.78374 3.08220 3.09502 3.12312 3.63217 3.89905 4.00702 4.11084 4.29985 4.33300 4.47232 4.65952 4.71551 4.95056 5.01720 5.02846 5.10580 5.17364 5.19406 5.20723 5.26817 5.33494 5.39625 5.42847 5.52952 5.53229 5.54709 5.62905 5.64832 5.76101 5.82454 5.93649 5.94286 5.95820 6.12775 6.33228 6.60305 6.80390 6.92180 7.01488 7.16015 7.25885 7.34779 7.71696 7.91354 8.91966 9.60543 10.64395 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020195 B = 0.002052 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.172663 B =13641.239738 C =14400.960977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C -0.145 4.145 4 C -0.148 4.148 5 C -0.102 4.102 6 C -0.636 4.636 7 S 2.607 3.393 8 O -0.963 6.963 9 O -0.958 6.958 10 N -1.113 6.113 11 C 0.174 3.826 12 C -0.206 4.206 13 C -0.054 4.054 14 C -0.238 4.238 15 C 0.160 3.840 16 O -0.173 6.173 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.859 5.859 21 Si 0.943 3.057 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.195 4.195 26 C -0.054 4.054 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.420 0.580 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.108 0.892 44 H 0.128 0.872 45 H 0.272 0.728 46 H 0.118 0.882 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.149 24.860 -7.639 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.063 4.063 3 C -0.202 4.202 4 C -0.205 4.205 5 C -0.140 4.140 6 C -0.765 4.765 7 S 2.700 3.300 8 O -0.954 6.954 9 O -0.948 6.948 10 N -0.874 5.874 11 C 0.049 3.951 12 C -0.209 4.209 13 C -0.073 4.073 14 C -0.257 4.257 15 C 0.105 3.895 16 O -0.076 6.076 17 C -0.470 4.470 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.214 4.214 26 C -0.073 4.073 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.255 0.745 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.126 0.874 44 H 0.145 0.855 45 H 0.082 0.918 46 H 0.137 0.863 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.941 24.793 -6.872 25.895 hybrid contribution -1.607 -0.562 -0.777 1.871 sum 1.335 24.231 -7.650 25.445 Atomic orbital electron populations 1.21974 0.94328 1.02175 1.02018 1.20461 0.95950 0.95342 0.94519 1.21904 1.01232 0.95019 1.02055 1.21976 1.01279 1.00525 0.96727 1.21403 1.01426 0.91345 0.99868 1.30758 1.13322 1.09140 1.23243 1.05015 0.74912 0.73908 0.76163 1.93595 1.78129 1.79066 1.44564 1.93595 1.29631 1.84483 1.87082 1.55751 1.61228 1.30323 1.40087 1.19988 0.99448 0.88119 0.87548 1.19072 0.97256 0.94635 1.09890 1.20609 0.94684 0.94752 0.97227 1.21145 1.02000 0.94736 1.07823 1.19448 0.92470 0.85908 0.91676 1.83980 1.38838 1.21801 1.62945 1.21299 0.95653 0.94922 1.35111 0.88991 1.25325 0.99619 0.94749 0.96817 1.70025 1.36721 1.05021 1.37542 0.85759 0.80063 0.78186 0.79292 1.19452 1.20220 1.19452 1.20231 0.96143 0.96548 1.08485 1.20575 0.98164 0.92558 0.95961 0.92382 0.92465 0.92176 0.92377 0.92354 0.92407 0.92160 0.92456 0.92326 0.90310 0.90251 0.84690 0.84573 0.74523 0.90327 0.92075 0.87396 0.85450 0.91818 0.86345 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.12 37.15 0.30 -0.57 16 2 C -0.06 -0.38 0.80 -154.51 -0.12 -0.50 16 3 C -0.14 -0.80 8.47 37.16 0.31 -0.48 16 4 C -0.15 -0.87 8.12 37.16 0.30 -0.57 16 5 C -0.10 -0.71 4.28 -26.73 -0.11 -0.82 16 6 C -0.64 -4.39 5.37 37.16 0.20 -4.19 16 7 S 2.61 27.63 5.46 -107.50 -0.59 27.04 16 8 O -0.96 -13.27 18.08 -57.54 -1.04 -14.31 16 9 O -0.96 -13.25 17.50 -57.54 -1.01 -14.26 16 10 N -1.11 -12.16 5.88 -11.66 -0.07 -12.23 16 11 C 0.17 2.00 6.25 -5.19 -0.03 1.97 16 12 C -0.21 -3.16 5.28 -104.58 -0.55 -3.71 16 13 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 14 C -0.24 -4.83 9.17 -39.39 -0.36 -5.19 16 15 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 16 O -0.17 -4.80 9.76 0.05 0.00 -4.80 16 17 C -0.39 -10.66 9.49 30.89 0.29 -10.37 16 18 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -24.65 13.67 55.48 0.76 -23.89 16 21 Si 0.94 19.93 29.55 -169.99 -5.02 14.90 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 23 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 C -0.19 -3.96 9.99 -39.39 -0.39 -4.35 16 26 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.13 0.74 6.43 -51.92 -0.33 0.40 16 39 H 0.14 0.75 6.43 -51.93 -0.33 0.42 16 40 H 0.42 4.65 8.61 -34.47 -0.30 4.35 16 41 H 0.08 0.89 7.64 -51.93 -0.40 0.49 16 42 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 43 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 44 H 0.13 2.59 5.64 -52.49 -0.30 2.30 16 45 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 47 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 394.73 15.07 5.95 5.95 Total: -1.00 -33.96 394.73 -9.53 -43.50 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.23 Total: 5.02 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: -1.29 Total: -26.93 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.69 Total: -36.12 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -2.05 Total: -33.36 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 27.63 SS G_CDS: -0.59 Total: 27.04 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.96 -9.53 -43.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172097423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.839 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds