Wall clock time and date at job start Sat Apr 11 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47124 * 2 1 4 4 C 1.53002 * 109.46907 * 240.00269 * 2 1 3 5 5 C 1.52995 * 109.47236 * 120.00130 * 2 1 3 6 6 C 1.53006 * 109.47170 * 59.99898 * 5 2 1 7 7 S 1.81397 * 109.47247 * 179.97438 * 6 5 2 8 8 O 1.42097 * 110.54137 * 68.37407 * 7 6 5 9 9 O 1.42098 * 110.54351 * 291.62664 * 7 6 5 10 10 N 1.65592 * 104.44891 * 179.97438 * 7 6 5 11 11 C 1.46508 * 120.00163 * 65.00085 * 10 7 6 12 12 C 1.50695 * 109.47103 * 164.99854 * 11 10 7 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47517 * 59.99414 * 21 19 17 23 23 H 1.48505 * 109.47332 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46989 * 299.99567 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09000 * 109.47050 * 300.00172 * 1 2 3 28 28 H 1.09003 * 109.47542 * 59.99701 * 1 2 3 29 29 H 1.09002 * 109.47533 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46554 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47008 * 299.99832 * 3 2 1 32 32 H 1.08998 * 109.46635 * 60.00314 * 3 2 1 33 33 H 1.08996 * 109.47012 * 299.99601 * 4 2 1 34 34 H 1.08998 * 109.47504 * 60.00447 * 4 2 1 35 35 H 1.09009 * 109.47095 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47372 * 299.99724 * 5 2 1 37 37 H 1.09003 * 109.47376 * 179.97438 * 5 2 1 38 38 H 1.08998 * 109.46635 * 59.99857 * 6 5 2 39 39 H 1.08992 * 109.47010 * 300.00129 * 6 5 2 40 40 H 0.97000 * 120.00403 * 244.99795 * 10 7 6 41 41 H 1.08998 * 109.46632 * 45.00210 * 11 10 7 42 42 H 1.08996 * 109.47144 * 284.99941 * 11 10 7 43 43 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 44 44 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 45 45 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 46 46 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 47 47 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0399 -0.7212 1.2492 6 6 1.5299 -2.1638 1.2492 7 16 2.1352 -3.0192 2.7299 8 8 1.5232 -2.4887 3.8974 9 8 3.5426 -3.2027 2.6594 10 7 1.5164 -4.5500 2.6047 11 6 1.9446 -5.4262 1.5113 12 6 1.5414 -6.8455 1.8176 13 6 0.3087 -7.3171 1.4045 14 6 -0.0636 -8.6175 1.6832 15 6 0.8012 -9.4517 2.3796 16 8 0.4384 -10.7305 2.6546 17 6 -0.7236 -11.1643 2.1260 18 1 -1.3589 -10.4799 1.5835 19 6 -1.1031 -12.4892 2.2789 20 7 -0.3291 -13.3231 2.9394 21 14 -2.7126 -13.0903 1.5459 22 1 -2.6917 -12.8906 0.0746 23 1 -2.8848 -14.5343 1.8466 24 1 -3.8408 -12.3239 2.1334 25 6 2.0358 -8.9733 2.7987 26 6 2.4045 -7.6736 2.5118 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7488 -1.2493 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 1.6767 -0.2074 2.1392 37 1 3.1300 -0.7217 1.2490 38 1 1.8932 -2.6775 0.3592 39 1 0.4400 -2.1638 1.2492 40 1 0.8704 -4.8668 3.2552 41 1 3.0280 -5.3712 1.4048 42 1 1.4715 -5.1064 0.5829 43 1 -0.3633 -6.6681 0.8626 44 1 -1.0262 -8.9852 1.3600 45 1 -0.5947 -14.2498 3.0467 46 1 2.7086 -9.6182 3.3443 47 1 3.3663 -7.3023 2.8335 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172097423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:52 Heat of formation + Delta-G solvation = -122.085427 kcal Electronic energy + Delta-G solvation = -26982.736567 eV Core-core repulsion = 23063.681401 eV Total energy + Delta-G solvation = -3919.055166 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.80755 -38.96707 -38.67810 -38.09917 -36.97353 -35.82440 -34.23944 -32.18241 -31.79694 -30.90971 -28.12855 -28.09890 -27.57265 -25.86698 -25.08981 -23.61939 -22.17768 -20.33000 -19.85181 -19.64516 -18.93406 -18.45916 -17.69081 -17.24294 -16.45199 -16.43238 -16.17617 -15.76085 -15.58520 -15.49258 -15.32888 -15.13428 -14.76657 -14.66058 -14.40993 -14.28441 -13.88285 -13.60519 -13.46579 -13.42656 -13.17699 -13.04863 -12.89985 -12.81488 -12.79634 -12.53824 -12.41047 -12.35960 -12.20517 -12.16030 -12.15502 -12.02775 -11.49151 -11.46326 -11.25616 -11.16313 -10.78989 -10.29453 -9.77862 -8.97556 -8.46956 -6.15378 -0.68058 0.60386 0.62774 1.36033 1.46299 1.52394 1.88767 2.18171 2.81925 2.88879 3.17307 3.29680 3.51450 3.56241 3.80666 3.83977 3.88740 4.08065 4.12369 4.21717 4.25808 4.50272 4.52786 4.57140 4.61221 4.65020 4.73193 4.79726 4.82790 4.90666 4.96088 4.99276 5.04455 5.08170 5.13339 5.13499 5.15967 5.24428 5.31035 5.41970 5.52963 5.53862 5.57034 5.71661 5.78600 6.02785 6.10635 6.21892 6.97513 7.78243 8.75904 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020195 B = 0.002052 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.172663 B =13641.239738 C =14400.960977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.059 4.059 3 C -0.147 4.147 4 C -0.152 4.152 5 C -0.114 4.114 6 C -0.610 4.610 7 S 2.614 3.386 8 O -1.000 7.000 9 O -0.996 6.996 10 N -1.116 6.116 11 C 0.170 3.830 12 C -0.175 4.175 13 C -0.045 4.045 14 C -0.245 4.245 15 C 0.118 3.882 16 O -0.233 6.233 17 C -0.413 4.413 18 H 0.105 0.895 19 C -0.025 4.025 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.256 1.256 23 H -0.275 1.275 24 H -0.257 1.257 25 C -0.210 4.210 26 C -0.054 4.054 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.420 0.580 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.154 0.846 44 H 0.122 0.878 45 H 0.272 0.728 46 H 0.108 0.892 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.085 28.366 -10.241 30.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.061 4.061 3 C -0.205 4.205 4 C -0.209 4.209 5 C -0.153 4.153 6 C -0.742 4.742 7 S 2.711 3.289 8 O -0.991 6.991 9 O -0.986 6.986 10 N -0.875 5.875 11 C 0.045 3.955 12 C -0.177 4.177 13 C -0.063 4.063 14 C -0.265 4.265 15 C 0.067 3.933 16 O -0.139 6.139 17 C -0.489 4.489 18 H 0.123 0.877 19 C -0.223 4.223 20 N -0.559 5.559 21 Si 0.839 3.161 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.181 1.181 25 C -0.230 4.230 26 C -0.073 4.073 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.178 0.822 39 H 0.177 0.823 40 H 0.254 0.746 41 H 0.104 0.896 42 H 0.125 0.875 43 H 0.172 0.828 44 H 0.140 0.860 45 H 0.081 0.919 46 H 0.126 0.874 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.913 28.339 -9.447 29.933 hybrid contribution -1.075 -1.185 -0.027 1.600 sum 0.838 27.154 -9.474 28.771 Atomic orbital electron populations 1.22021 0.94037 1.02619 1.02205 1.20453 0.96156 0.95408 0.94054 1.21932 1.01297 0.94941 1.02316 1.22025 1.01309 1.00914 0.96648 1.21560 1.01756 0.91408 1.00546 1.30549 1.14617 1.08450 1.20633 1.04654 0.73802 0.73595 0.76804 1.93549 1.78438 1.79435 1.47647 1.93548 1.32088 1.84975 1.87950 1.55554 1.61111 1.30653 1.40212 1.20189 1.00666 0.85310 0.89338 1.19591 0.95825 0.96405 1.05919 1.21052 0.95568 0.93390 0.96316 1.21306 1.01418 0.96198 1.07533 1.20007 0.94242 0.85372 0.93688 1.83948 1.39887 1.24285 1.65798 1.21812 0.96056 0.95693 1.35339 0.87728 1.26636 1.03727 0.94654 0.97244 1.70184 1.39546 1.05433 1.40743 0.84630 0.75066 0.77521 0.78896 1.17980 1.19929 1.18080 1.20437 0.95492 0.98132 1.08913 1.20948 0.99611 0.91237 0.95460 0.92575 0.92058 0.91560 0.92375 0.91843 0.92463 0.91448 0.92084 0.92419 0.90369 0.90151 0.82170 0.82287 0.74557 0.89572 0.87547 0.82804 0.86020 0.91877 0.87359 0.84219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.12 71.98 0.58 -0.66 16 2 C -0.06 -0.52 0.80 -52.18 -0.04 -0.57 16 3 C -0.15 -1.26 8.47 71.98 0.61 -0.65 16 4 C -0.15 -1.20 8.12 71.98 0.58 -0.62 16 5 C -0.11 -1.21 4.28 30.59 0.13 -1.08 16 6 C -0.61 -5.63 5.37 71.98 0.39 -5.24 16 7 S 2.61 47.84 5.46 -56.49 -0.31 47.53 16 8 O -1.00 -25.88 18.08 -127.65 -2.31 -28.19 16 9 O -1.00 -25.32 17.50 -127.65 -2.23 -27.55 16 10 N -1.12 -19.97 5.88 -190.79 -1.12 -21.09 16 11 C 0.17 3.01 6.25 85.63 0.54 3.55 16 12 C -0.18 -4.71 5.28 -19.84 -0.10 -4.81 16 13 C -0.04 -1.30 9.69 22.25 0.22 -1.09 16 14 C -0.25 -9.84 9.17 22.39 0.21 -9.63 16 15 C 0.12 5.67 6.65 22.58 0.15 5.82 16 16 O -0.23 -13.81 9.76 -22.72 -0.22 -14.03 16 17 C -0.41 -23.51 9.49 67.92 0.64 -22.86 16 18 H 0.11 5.36 5.20 -2.91 -0.02 5.35 16 19 C -0.03 -1.41 5.49 84.84 0.47 -0.94 16 20 N -0.92 -56.20 13.67 21.62 0.30 -55.90 16 21 Si 1.02 41.90 29.55 68.60 2.03 43.92 16 22 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 24 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 25 C -0.21 -8.79 9.99 22.39 0.22 -8.57 16 26 C -0.05 -1.74 9.69 22.25 0.22 -1.52 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.45 6.43 -2.39 -0.02 0.44 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.43 6.43 -2.39 -0.02 0.41 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.16 0.77 6.43 -2.39 -0.02 0.76 16 39 H 0.16 0.88 6.43 -2.39 -0.02 0.86 16 40 H 0.42 7.89 8.61 -96.75 -0.83 7.05 16 41 H 0.09 1.50 7.64 -2.39 -0.02 1.48 16 42 H 0.11 1.05 8.08 -2.39 -0.02 1.03 16 43 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 44 H 0.12 4.95 5.64 -2.91 -0.02 4.93 16 45 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 46 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 47 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -80.60 394.73 1.08 -79.53 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.14 Total: 24.66 kcal Atomic # 6 Polarization: -53.68 SS G_CDS: 4.81 Total: -48.88 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -0.83 Total: -76.99 kcal Atomic # 8 Polarization: -65.01 SS G_CDS: -4.76 Total: -69.77 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 47.84 SS G_CDS: -0.31 Total: 47.53 kcal Total: -80.60 1.08 -79.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172097423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.560 kcal (2) G-P(sol) polarization free energy of solvation -80.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds