Wall clock time and date at job start Sat Apr 11 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47590 * 2 1 4 4 C 1.52995 * 109.47282 * 240.00014 * 2 1 3 5 5 O 1.45207 * 109.47281 * 120.00076 * 2 1 3 6 6 C 1.34628 * 117.00073 * 59.99889 * 5 2 1 7 7 O 1.21513 * 119.99904 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00318 * 180.02562 * 6 5 2 9 9 C 1.47425 * 125.64776 * 0.04175 * 8 6 5 10 10 C 1.54904 * 104.83347 * 204.09318 * 9 8 6 11 11 C 1.55157 * 101.58052 * 322.98591 * 10 9 8 12 12 F 1.39894 * 110.87763 * 277.06779 * 11 10 9 13 13 C 1.50702 * 110.71925 * 153.86283 * 11 10 9 14 14 O 1.21294 * 120.00015 * 0.03255 * 13 11 10 15 15 N 1.34777 * 119.99967 * 180.02562 * 13 11 10 16 16 C 1.37101 * 119.99713 * 180.02562 * 15 13 11 17 17 H 1.07995 * 120.00249 * 12.42505 * 16 15 13 18 18 C 1.38951 * 119.99541 * 192.42601 * 16 15 13 19 19 N 1.31413 * 120.00284 * 25.76934 * 18 16 15 20 20 Si 1.86801 * 120.00086 * 205.76611 * 18 16 15 21 21 H 1.48502 * 109.46954 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47487 * 120.00052 * 20 18 16 23 23 H 1.48503 * 109.47193 * 240.00574 * 20 18 16 24 24 C 1.46494 * 120.00408 * 0.02562 * 15 13 11 25 25 C 1.47206 * 109.47040 * 89.20988 * 24 15 13 26 26 N 6.73032 * 76.34423 * 167.69128 * 2 1 3 27 27 C 1.47024 * 125.64998 * 179.97438 * 8 6 5 28 28 H 1.08999 * 109.46772 * 299.99948 * 1 2 3 29 29 H 1.08995 * 109.46806 * 59.99842 * 1 2 3 30 30 H 1.08991 * 109.47186 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47691 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46874 * 300.00391 * 3 2 1 33 33 H 1.09006 * 109.46893 * 59.99848 * 3 2 1 34 34 H 1.09003 * 109.46844 * 300.00184 * 4 2 1 35 35 H 1.08998 * 109.47495 * 59.99680 * 4 2 1 36 36 H 1.08997 * 109.47985 * 180.02562 * 4 2 1 37 37 H 1.08996 * 110.36416 * 322.93227 * 9 8 6 38 38 H 1.09002 * 110.36715 * 85.25081 * 9 8 6 39 39 H 1.09000 * 111.00386 * 204.91638 * 10 9 8 40 40 H 1.08996 * 111.00598 * 81.06185 * 10 9 8 41 41 H 0.97001 * 119.99986 * 179.97438 * 19 18 16 42 42 H 1.09006 * 109.46979 * 329.22030 * 24 15 13 43 43 H 1.08998 * 109.47496 * 209.21659 * 24 15 13 44 44 H 1.08994 * 109.88182 * 59.55758 * 27 8 6 45 45 H 1.09005 * 110.00912 * 298.46589 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0673 -2.6654 2.4171 9 6 2.9158 -2.1396 3.5020 10 6 3.5972 -3.3890 4.1136 11 6 2.4578 -4.4387 4.0275 12 9 1.5823 -4.3142 5.1116 13 6 3.0225 -5.8342 3.9583 14 8 4.2234 -6.0040 3.9750 15 7 2.1932 -6.8935 3.8778 16 6 2.7070 -8.1631 3.8153 17 1 3.7514 -8.3342 4.0305 18 6 1.8839 -9.2296 3.4752 19 7 0.8102 -9.0245 2.7457 20 14 2.3035 -10.9552 4.0547 21 1 3.5537 -10.9181 4.8553 22 1 1.1952 -11.4793 4.8925 23 1 2.4953 -11.8398 2.8774 24 6 0.7428 -6.6885 3.8571 25 6 0.2908 -6.5202 2.4663 26 7 -0.0589 -6.3897 1.3942 27 6 1.7476 -4.0707 2.7077 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 3.6650 -1.4571 3.1007 38 1 2.3049 -1.6357 4.2511 39 1 3.8853 -3.2093 5.1493 40 1 4.4570 -3.6960 3.5182 41 1 0.2359 -9.7691 2.5079 42 1 0.4939 -5.7955 4.4306 43 1 0.2472 -7.5534 4.2981 44 1 2.1108 -4.7078 1.9013 45 1 0.6702 -4.1927 2.8197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177790831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:05 Heat of formation + Delta-G solvation = -104.785946 kcal Electronic energy + Delta-G solvation = -31743.795580 eV Core-core repulsion = 27291.570151 eV Total energy + Delta-G solvation = -4452.225429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -47.76792 -40.74966 -39.21504 -37.91085 -36.33168 -35.90377 -34.43530 -34.07109 -32.09296 -31.07913 -29.22821 -27.55628 -27.53359 -27.46069 -25.57939 -24.22207 -22.04751 -21.53966 -19.65114 -19.28803 -18.13028 -17.87866 -17.22836 -16.64175 -16.45141 -16.29517 -15.72701 -15.45007 -14.96419 -14.77979 -14.62536 -14.17730 -13.97613 -13.87599 -13.63252 -13.36659 -13.16282 -12.93812 -12.66436 -12.62654 -12.42288 -12.22827 -12.07491 -11.99985 -11.96553 -11.69223 -11.62806 -11.53736 -11.43560 -11.31825 -11.27922 -11.15611 -10.76321 -10.59400 -10.44531 -10.41019 -10.35529 -9.98324 -9.41251 -8.83677 -8.72000 -8.26423 -6.68429 -4.12323 2.01213 2.90825 2.93841 3.15575 3.21518 3.28854 3.57626 3.79670 3.96906 4.04365 4.24057 4.31769 4.38673 4.60402 4.64063 4.72066 4.78838 4.82951 5.08519 5.18923 5.23725 5.30840 5.31676 5.39388 5.40907 5.53063 5.55462 5.63222 5.75948 5.78323 5.81349 5.83657 5.94947 6.03638 6.10181 6.22082 6.23736 6.29380 6.39576 6.44300 7.32126 7.46995 7.63970 8.07532 8.38638 8.73240 8.78641 8.99143 9.46287 10.35944 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018866 B = 0.003390 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.830689 B = 8257.808196 C = 8997.725800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.138 4.138 4 C -0.185 4.185 5 O -0.362 6.362 6 C 0.667 3.333 7 O -0.556 6.556 8 N -0.602 5.602 9 C 0.101 3.899 10 C -0.130 4.130 11 C 0.096 3.904 12 F -0.186 7.186 13 C 0.433 3.567 14 O -0.556 6.556 15 N -0.418 5.418 16 C -0.321 4.321 17 H 0.116 0.884 18 C 0.038 3.962 19 N -0.859 5.859 20 Si 0.928 3.072 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.281 1.281 24 C 0.201 3.799 25 C 0.235 3.765 26 N -0.452 5.452 27 C 0.115 3.885 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.277 0.723 42 H 0.099 0.901 43 H 0.127 0.873 44 H 0.093 0.907 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.003 16.447 1.446 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.242 4.242 5 O -0.277 6.277 6 C 0.422 3.578 7 O -0.444 6.444 8 N -0.344 5.344 9 C -0.021 4.021 10 C -0.169 4.169 11 C 0.074 3.926 12 F -0.166 7.166 13 C 0.219 3.781 14 O -0.439 6.439 15 N -0.135 5.135 16 C -0.448 4.448 17 H 0.133 0.867 18 C -0.168 4.168 19 N -0.496 5.496 20 Si 0.754 3.246 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.207 1.207 24 C 0.074 3.926 25 C -0.083 4.083 26 N -0.132 5.132 27 C -0.007 4.007 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.145 0.855 44 H 0.111 0.889 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.371 16.357 -0.574 16.371 hybrid contribution -0.104 -1.062 0.514 1.185 sum -0.475 15.294 -0.061 15.302 Atomic orbital electron populations 1.22519 0.94018 1.05274 1.02295 1.22064 0.94409 0.91421 0.82242 1.21843 1.02204 0.92537 1.02982 1.22527 1.01571 1.03748 0.96354 1.86281 1.71648 1.23408 1.46327 1.17392 0.78939 0.80398 0.81022 1.90963 1.40807 1.70254 1.42425 1.47026 1.53609 1.12131 1.21607 1.22466 0.93748 0.96827 0.89094 1.23214 0.97537 0.91883 1.04253 1.22153 0.89414 0.97358 0.83697 1.92812 1.70438 1.96900 1.56481 1.19504 0.87335 0.84146 0.87075 1.90576 1.13857 1.84059 1.55429 1.43710 1.03088 1.06133 1.60611 1.19852 0.98101 0.80163 1.46666 0.86650 1.25347 0.96025 1.00871 0.94604 1.69907 1.15822 1.33812 1.30068 0.85837 0.79085 0.80840 0.78847 1.18821 1.20179 1.20708 1.19150 0.83249 1.04286 0.85894 1.29019 0.93527 0.90424 0.95374 1.80952 1.08432 1.12356 1.11483 1.22628 1.01009 0.80551 0.96546 0.92217 0.91218 0.89238 0.91496 0.90221 0.91523 0.89221 0.91212 0.92158 0.89362 0.90584 0.87844 0.87204 0.91194 0.88312 0.85513 0.88923 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 8.37 37.16 0.31 -1.83 16 2 C 0.14 1.59 1.13 -90.62 -0.10 1.49 16 3 C -0.14 -1.15 8.85 37.16 0.33 -0.82 16 4 C -0.18 -2.22 8.37 37.15 0.31 -1.91 16 5 O -0.36 -5.15 9.42 -40.29 -0.38 -5.52 16 6 C 0.67 11.35 7.93 54.05 0.43 11.78 16 7 O -0.56 -10.95 12.21 -19.28 -0.24 -11.19 16 8 N -0.60 -9.82 3.33 -176.30 -0.59 -10.40 16 9 C 0.10 1.28 6.92 -2.53 -0.02 1.27 16 10 C -0.13 -1.86 5.99 -24.59 -0.15 -2.01 16 11 C 0.10 1.69 0.94 -89.93 -0.08 1.60 16 12 F -0.19 -3.03 14.71 2.25 0.03 -3.00 16 13 C 0.43 9.49 6.65 -10.98 -0.07 9.42 16 14 O -0.56 -13.61 15.32 5.55 0.08 -13.52 16 15 N -0.42 -9.56 2.59 -117.93 -0.30 -9.86 16 16 C -0.32 -8.00 9.37 -14.93 -0.14 -8.14 16 17 H 0.12 3.02 7.35 -52.49 -0.39 2.63 16 18 C 0.04 0.90 4.82 -17.47 -0.08 0.81 16 19 N -0.86 -21.05 9.33 55.50 0.52 -20.54 16 20 Si 0.93 18.87 29.62 -169.99 -5.04 13.83 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 C 0.20 4.08 4.74 -6.83 -0.03 4.04 16 25 C 0.23 5.26 9.98 -20.78 -0.21 5.05 16 26 N -0.45 -10.98 18.53 42.13 0.78 -10.20 16 27 C 0.12 2.10 4.29 -3.06 -0.01 2.09 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.32 5.88 -51.93 -0.31 1.02 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 1.37 5.88 -51.93 -0.31 1.07 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.11 1.69 7.40 -51.93 -0.38 1.31 16 41 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 42 H 0.10 1.70 4.96 -51.93 -0.26 1.44 16 43 H 0.13 2.57 6.56 -51.93 -0.34 2.23 16 44 H 0.09 1.98 7.34 -51.93 -0.38 1.60 16 45 H 0.09 1.64 6.37 -51.93 -0.33 1.31 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -30.49 366.09 -5.18 -35.67 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.05 Total: 6.36 kcal Atomic # 6 Polarization: 22.37 SS G_CDS: 0.48 Total: 22.85 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.41 Total: -51.00 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.53 Total: -30.23 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.03 Total: -3.00 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.04 Total: 13.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.49 -5.18 -35.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177790831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.118 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds