Wall clock time and date at job start Sat Apr 11 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47590 * 2 1 4 4 C 1.52995 * 109.47282 * 240.00014 * 2 1 3 5 5 O 1.45207 * 109.47281 * 120.00076 * 2 1 3 6 6 C 1.34628 * 117.00073 * 59.99889 * 5 2 1 7 7 O 1.21513 * 119.99904 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00318 * 180.02562 * 6 5 2 9 9 C 1.47425 * 125.64776 * 0.04175 * 8 6 5 10 10 C 1.54904 * 104.83347 * 204.09318 * 9 8 6 11 11 C 1.55157 * 101.58052 * 322.98591 * 10 9 8 12 12 F 1.39894 * 110.87763 * 277.06779 * 11 10 9 13 13 C 1.50702 * 110.71925 * 153.86283 * 11 10 9 14 14 O 1.21294 * 120.00015 * 0.03255 * 13 11 10 15 15 N 1.34777 * 119.99967 * 180.02562 * 13 11 10 16 16 C 1.37101 * 119.99713 * 180.02562 * 15 13 11 17 17 H 1.07995 * 120.00249 * 12.42505 * 16 15 13 18 18 C 1.38951 * 119.99541 * 192.42601 * 16 15 13 19 19 N 1.31413 * 120.00284 * 25.76934 * 18 16 15 20 20 Si 1.86801 * 120.00086 * 205.76611 * 18 16 15 21 21 H 1.48502 * 109.46954 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47487 * 120.00052 * 20 18 16 23 23 H 1.48503 * 109.47193 * 240.00574 * 20 18 16 24 24 C 1.46494 * 120.00408 * 0.02562 * 15 13 11 25 25 C 1.47206 * 109.47040 * 89.20988 * 24 15 13 26 26 N 6.73032 * 76.34423 * 167.69128 * 2 1 3 27 27 C 1.47024 * 125.64998 * 179.97438 * 8 6 5 28 28 H 1.08999 * 109.46772 * 299.99948 * 1 2 3 29 29 H 1.08995 * 109.46806 * 59.99842 * 1 2 3 30 30 H 1.08991 * 109.47186 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47691 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46874 * 300.00391 * 3 2 1 33 33 H 1.09006 * 109.46893 * 59.99848 * 3 2 1 34 34 H 1.09003 * 109.46844 * 300.00184 * 4 2 1 35 35 H 1.08998 * 109.47495 * 59.99680 * 4 2 1 36 36 H 1.08997 * 109.47985 * 180.02562 * 4 2 1 37 37 H 1.08996 * 110.36416 * 322.93227 * 9 8 6 38 38 H 1.09002 * 110.36715 * 85.25081 * 9 8 6 39 39 H 1.09000 * 111.00386 * 204.91638 * 10 9 8 40 40 H 1.08996 * 111.00598 * 81.06185 * 10 9 8 41 41 H 0.97001 * 119.99986 * 179.97438 * 19 18 16 42 42 H 1.09006 * 109.46979 * 329.22030 * 24 15 13 43 43 H 1.08998 * 109.47496 * 209.21659 * 24 15 13 44 44 H 1.08994 * 109.88182 * 59.55758 * 27 8 6 45 45 H 1.09005 * 110.00912 * 298.46589 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0673 -2.6654 2.4171 9 6 2.9158 -2.1396 3.5020 10 6 3.5972 -3.3890 4.1136 11 6 2.4578 -4.4387 4.0275 12 9 1.5823 -4.3142 5.1116 13 6 3.0225 -5.8342 3.9583 14 8 4.2234 -6.0040 3.9750 15 7 2.1932 -6.8935 3.8778 16 6 2.7070 -8.1631 3.8153 17 1 3.7514 -8.3342 4.0305 18 6 1.8839 -9.2296 3.4752 19 7 0.8102 -9.0245 2.7457 20 14 2.3035 -10.9552 4.0547 21 1 3.5537 -10.9181 4.8553 22 1 1.1952 -11.4793 4.8925 23 1 2.4953 -11.8398 2.8774 24 6 0.7428 -6.6885 3.8571 25 6 0.2908 -6.5202 2.4663 26 7 -0.0589 -6.3897 1.3942 27 6 1.7476 -4.0707 2.7077 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 3.6650 -1.4571 3.1007 38 1 2.3049 -1.6357 4.2511 39 1 3.8853 -3.2093 5.1493 40 1 4.4570 -3.6960 3.5182 41 1 0.2359 -9.7691 2.5079 42 1 0.4939 -5.7955 4.4306 43 1 0.2472 -7.5534 4.2981 44 1 2.1108 -4.7078 1.9013 45 1 0.6702 -4.1927 2.8197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177790831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:04 Heat of formation + Delta-G solvation = -123.641261 kcal Electronic energy + Delta-G solvation = -31744.613208 eV Core-core repulsion = 27291.570151 eV Total energy + Delta-G solvation = -4453.043057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.158 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.17632 -41.96963 -40.84474 -39.22278 -37.88388 -37.47212 -36.27447 -35.10452 -33.93218 -32.40040 -30.58497 -29.29003 -28.39727 -28.28879 -27.29646 -25.63075 -23.39852 -22.73961 -21.14934 -20.49752 -19.95361 -19.13833 -18.79662 -18.24655 -17.81684 -17.57025 -17.11682 -16.90351 -16.49764 -16.07894 -15.80753 -15.74312 -15.39880 -15.13200 -14.98742 -14.89523 -14.65531 -14.33456 -14.04439 -13.84848 -13.78135 -13.44752 -13.35618 -13.27738 -13.12202 -12.98788 -12.93394 -12.88316 -12.70553 -12.67706 -12.48626 -12.37887 -12.30755 -12.27520 -12.10392 -11.98807 -11.43852 -11.23723 -11.20422 -10.59075 -10.11615 -10.03691 -8.52942 -6.04690 0.77951 1.25930 1.47425 1.59657 1.60424 1.61687 1.85757 2.18532 2.28347 2.62417 2.75417 2.83925 2.92742 3.03262 3.37345 3.47868 3.63037 3.73320 3.77752 3.88305 3.92877 4.05191 4.23518 4.36546 4.43821 4.50179 4.58155 4.59231 4.66956 4.71679 4.74469 4.80596 4.82907 4.88009 4.93757 5.04869 5.13923 5.26331 5.32011 5.39271 5.41026 5.81502 6.20274 6.22425 6.91590 6.94922 7.11580 7.15775 7.64900 8.50268 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018866 B = 0.003390 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.830689 B = 8257.808196 C = 8997.725800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 C -0.131 4.131 4 C -0.183 4.183 5 O -0.354 6.354 6 C 0.665 3.335 7 O -0.591 6.591 8 N -0.606 5.606 9 C 0.105 3.895 10 C -0.124 4.124 11 C 0.107 3.893 12 F -0.173 7.173 13 C 0.429 3.571 14 O -0.586 6.586 15 N -0.431 5.431 16 C -0.351 4.351 17 H 0.095 0.905 18 C 0.011 3.989 19 N -0.880 5.880 20 Si 0.992 3.008 21 H -0.266 1.266 22 H -0.261 1.261 23 H -0.287 1.287 24 C 0.206 3.794 25 C 0.250 3.750 26 N -0.490 5.490 27 C 0.126 3.874 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.095 0.905 41 H 0.280 0.720 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.054 0.946 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 18.705 2.604 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 C -0.187 4.187 4 C -0.240 4.240 5 O -0.268 6.268 6 C 0.420 3.580 7 O -0.481 6.481 8 N -0.347 5.347 9 C -0.016 4.016 10 C -0.162 4.162 11 C 0.084 3.916 12 F -0.154 7.154 13 C 0.216 3.784 14 O -0.471 6.471 15 N -0.149 5.149 16 C -0.477 4.477 17 H 0.113 0.887 18 C -0.193 4.193 19 N -0.516 5.516 20 Si 0.815 3.185 21 H -0.190 1.190 22 H -0.186 1.186 23 H -0.213 1.213 24 C 0.080 3.920 25 C -0.068 4.068 26 N -0.171 5.171 27 C 0.002 3.998 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.151 0.849 40 H 0.114 0.886 41 H 0.090 0.910 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.072 0.928 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.254 18.653 0.601 18.664 hybrid contribution -0.114 -1.718 0.085 1.724 sum -0.368 16.935 0.685 16.953 Atomic orbital electron populations 1.22476 0.94062 1.03272 1.03943 1.22525 0.94665 0.93034 0.81133 1.21866 1.02550 0.89679 1.04643 1.22495 1.01723 1.01825 0.97930 1.86303 1.71369 1.21653 1.47517 1.17568 0.78557 0.81192 0.80654 1.90961 1.42301 1.71202 1.43662 1.47082 1.53968 1.11294 1.22406 1.22723 0.94077 0.96256 0.88536 1.23279 0.95775 0.91104 1.06037 1.21869 0.90660 0.95400 0.83651 1.92831 1.70154 1.96668 1.55722 1.20252 0.87075 0.85631 0.85426 1.90547 1.15239 1.85074 1.56227 1.43879 1.04148 1.06036 1.60792 1.19803 0.97750 0.81720 1.48443 0.88719 1.26028 0.95697 1.03735 0.93888 1.69971 1.16502 1.34797 1.30378 0.84911 0.79100 0.76432 0.78068 1.19000 1.18590 1.21331 1.19358 0.81934 1.05816 0.84923 1.29422 0.92507 0.89224 0.95624 1.80948 1.09746 1.13772 1.12629 1.22261 1.00327 0.81584 0.95627 0.91372 0.88772 0.92954 0.90965 0.87763 0.90645 0.93131 0.88672 0.91818 0.86956 0.87869 0.84928 0.88609 0.91002 0.85090 0.85338 0.92792 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.98 8.37 71.98 0.60 -3.38 16 2 C 0.12 2.67 1.13 -10.80 -0.01 2.66 16 3 C -0.13 -1.71 8.85 71.98 0.64 -1.07 16 4 C -0.18 -4.26 8.37 71.98 0.60 -3.66 16 5 O -0.35 -9.56 9.42 -55.37 -0.52 -10.08 16 6 C 0.66 22.59 7.93 129.79 1.03 23.62 16 7 O -0.59 -24.21 12.21 19.80 0.24 -23.96 16 8 N -0.61 -19.34 3.33 -942.12 -3.13 -22.48 16 9 C 0.10 2.37 6.92 86.85 0.60 2.97 16 10 C -0.12 -3.28 5.99 31.98 0.19 -3.09 16 11 C 0.11 3.65 0.94 -10.35 -0.01 3.64 16 12 F -0.17 -5.29 14.71 44.97 0.66 -4.63 16 13 C 0.43 19.01 6.65 87.66 0.58 19.59 16 14 O -0.59 -29.24 15.32 -3.07 -0.05 -29.29 16 15 N -0.43 -20.06 2.59 -645.41 -1.67 -21.73 16 16 C -0.35 -17.87 9.37 84.04 0.79 -17.08 16 17 H 0.10 5.14 7.35 -2.91 -0.02 5.12 16 18 C 0.01 0.52 4.82 84.93 0.41 0.93 16 19 N -0.88 -43.52 9.33 21.66 0.20 -43.32 16 20 Si 0.99 38.81 29.62 68.60 2.03 40.84 16 21 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 22 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 23 H -0.29 -11.48 7.11 99.48 0.71 -10.77 16 24 C 0.21 8.39 4.74 84.58 0.40 8.79 16 25 C 0.25 11.46 9.98 89.45 0.89 12.35 16 26 N -0.49 -24.61 18.53 20.00 0.37 -24.24 16 27 C 0.13 4.65 4.29 86.73 0.37 5.02 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.58 5.88 -2.39 -0.01 1.56 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.05 1.60 5.88 -2.39 -0.01 1.59 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 2.06 8.04 -2.39 -0.02 2.05 16 38 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.10 2.86 7.40 -2.39 -0.02 2.85 16 41 H 0.28 13.22 8.31 -92.71 -0.77 12.45 16 42 H 0.13 4.40 4.96 -2.38 -0.01 4.39 16 43 H 0.13 5.22 6.56 -2.39 -0.02 5.20 16 44 H 0.05 2.42 7.34 -2.39 -0.02 2.40 16 45 H 0.08 3.04 6.37 -2.38 -0.02 3.03 16 Total: -1.00 -69.43 366.09 6.25 -63.17 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 1.03 Total: 24.42 kcal Atomic # 6 Polarization: 44.20 SS G_CDS: 7.09 Total: 51.29 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.23 Total: -111.76 kcal Atomic # 8 Polarization: -63.01 SS G_CDS: -0.33 Total: -63.33 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.66 Total: -4.63 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -69.43 6.25 -63.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177790831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.467 kcal (2) G-P(sol) polarization free energy of solvation -69.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds