Wall clock time and date at job start Sat Apr 11 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46946 * 2 1 4 4 O 1.42898 * 109.47298 * 240.00404 * 2 1 3 5 5 C 1.50696 * 109.47207 * 119.99724 * 2 1 3 6 6 C 1.38238 * 119.99728 * 150.00400 * 5 2 1 7 7 C 1.38235 * 120.00108 * 180.02562 * 6 5 2 8 8 C 1.38243 * 119.99617 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99586 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47014 * 89.99954 * 9 8 7 11 11 S 1.65596 * 120.00034 * 164.99846 * 10 9 8 12 12 O 1.42097 * 104.27822 * 181.07072 * 11 10 9 13 13 O 1.42107 * 104.27703 * 308.92806 * 11 10 9 14 14 C 1.81393 * 104.45000 * 64.99722 * 11 10 9 15 15 C 1.53006 * 109.47382 * 180.02562 * 14 11 10 16 16 C 1.52993 * 109.47256 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47326 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00001 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00505 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99823 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00320 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47358 * 59.99941 * 21 19 17 23 23 H 1.48495 * 109.47436 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47389 * 300.00278 * 21 19 17 25 25 C 1.38233 * 120.00248 * 0.25361 * 8 7 6 26 26 C 1.38234 * 120.00209 * 330.02806 * 5 2 1 27 27 H 1.08997 * 109.47348 * 299.99365 * 1 2 3 28 28 H 1.09001 * 109.47359 * 60.00058 * 1 2 3 29 29 H 1.09002 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47351 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47044 * 300.00134 * 3 2 1 32 32 H 1.09006 * 109.47112 * 59.99581 * 3 2 1 33 33 H 0.96708 * 113.99704 * 299.99281 * 4 2 1 34 34 H 1.08000 * 120.00578 * 359.97438 * 6 5 2 35 35 H 1.07999 * 120.00165 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.46646 * 209.99280 * 9 8 7 37 37 H 1.09000 * 109.47248 * 329.99998 * 9 8 7 38 38 H 0.96999 * 119.99608 * 345.00138 * 10 9 8 39 39 H 1.09002 * 109.47486 * 299.99813 * 14 11 10 40 40 H 1.09003 * 109.47547 * 60.00357 * 14 11 10 41 41 H 1.09002 * 109.46452 * 300.00195 * 15 14 11 42 42 H 1.08997 * 109.47274 * 59.99945 * 15 14 11 43 43 H 1.09002 * 109.47377 * 299.99417 * 16 15 14 44 44 H 1.09005 * 109.47448 * 59.99638 * 16 15 14 45 45 H 0.96998 * 120.00380 * 179.97438 * 20 19 17 46 46 H 1.08004 * 119.99934 * 179.72684 * 25 8 7 47 47 H 1.07999 * 120.00005 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0323 -0.7103 1.2305 6 6 3.2403 -1.3817 1.1962 7 6 3.7009 -2.0337 2.3247 8 6 2.9533 -2.0149 3.4874 9 6 3.4552 -2.7262 4.7175 10 7 4.2687 -1.8060 5.5160 11 16 4.6427 -2.1800 7.0852 12 8 5.4038 -1.0690 7.5385 13 8 3.3911 -2.5010 7.6768 14 6 5.6862 -3.6586 6.9617 15 6 6.1017 -4.1082 8.3640 16 6 6.9823 -5.3550 8.2598 17 6 7.3921 -5.7975 9.6408 18 1 7.0574 -5.2449 10.5064 19 6 8.1933 -6.9082 9.7995 20 7 8.5995 -7.5820 8.7457 21 14 8.7006 -7.4571 11.5114 22 1 7.4886 -7.7720 12.3098 23 1 9.5554 -8.6671 11.4104 24 1 9.4614 -6.3682 12.1753 25 6 1.7426 -1.3484 3.5199 26 6 1.2850 -0.6910 2.3932 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.7211 -1.5952 -1.2329 34 1 3.8238 -1.3975 0.2876 35 1 4.6444 -2.5585 2.2978 36 1 2.6071 -3.0692 5.3102 37 1 4.0609 -3.5823 4.4204 38 1 4.5882 -0.9775 5.1255 39 1 5.1275 -4.4580 6.4750 40 1 6.5756 -3.4278 6.3754 41 1 6.6602 -3.3089 8.8511 42 1 5.2121 -4.3392 8.9499 43 1 6.4241 -6.1544 7.7725 44 1 7.8719 -5.1236 7.6739 45 1 9.1635 -8.3632 8.8572 46 1 1.1565 -1.3374 4.4270 47 1 0.3413 -0.1665 2.4200 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186471861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:20 Heat of formation + Delta-G solvation = -121.921550 kcal Electronic energy + Delta-G solvation = -26635.298329 eV Core-core repulsion = 22716.250270 eV Total energy + Delta-G solvation = -3919.048059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.40410 -38.06698 -36.90898 -35.79215 -35.35185 -34.68340 -33.11315 -32.19768 -31.27537 -30.32637 -27.85067 -27.82190 -25.98218 -23.73898 -23.00380 -22.44926 -20.70434 -20.49664 -19.23927 -18.06290 -17.60783 -16.86619 -16.51011 -15.99978 -15.91311 -15.61750 -15.19932 -15.07267 -14.96033 -14.50041 -14.29951 -14.05774 -13.86014 -13.53743 -13.23230 -12.90663 -12.68100 -12.59278 -12.51531 -12.32219 -12.28962 -12.15706 -11.96104 -11.84169 -11.78864 -11.66755 -11.45184 -11.24877 -11.06082 -10.90482 -10.88438 -10.49389 -10.45715 -9.96113 -9.76413 -9.34689 -9.25132 -9.12618 -9.02115 -8.41338 -6.06502 -4.09661 0.39132 0.90613 1.07312 2.83326 3.31596 3.35511 3.38657 3.41967 3.71669 3.92446 4.09559 4.33537 4.36881 4.41722 4.45172 4.57806 4.60258 4.71344 5.00279 5.02462 5.06509 5.14523 5.17524 5.22650 5.24884 5.29947 5.31842 5.35529 5.43821 5.59385 5.62715 5.67577 5.73799 5.75014 5.87673 6.05256 6.18437 6.25417 6.27146 6.43351 6.62580 6.84495 6.87636 7.17522 7.55467 7.65537 7.91286 8.31776 8.96311 9.55023 11.04650 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.001844 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.871131 B =15179.982306 C =15762.089020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.168 3.832 3 C -0.135 4.135 4 O -0.555 6.555 5 C -0.115 4.115 6 C -0.106 4.106 7 C -0.103 4.103 8 C -0.093 4.093 9 C 0.154 3.846 10 N -1.121 6.121 11 S 2.601 3.399 12 O -0.962 6.962 13 O -0.962 6.962 14 C -0.609 4.609 15 C -0.106 4.106 16 C 0.031 3.969 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.100 4.100 26 C -0.115 4.115 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.378 0.622 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.416 0.584 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.262 0.738 46 H 0.128 0.872 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.205 14.729 -20.599 30.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.128 3.872 3 C -0.192 4.192 4 O -0.361 6.361 5 C -0.116 4.116 6 C -0.124 4.124 7 C -0.121 4.121 8 C -0.095 4.095 9 C 0.028 3.972 10 N -0.879 5.879 11 S 2.697 3.303 12 O -0.953 6.953 13 O -0.952 6.952 14 C -0.741 4.741 15 C -0.146 4.146 16 C -0.008 4.008 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.723 3.277 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.119 4.119 26 C -0.132 4.132 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.226 0.774 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.249 0.751 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.072 0.928 46 H 0.146 0.854 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.211 15.481 -19.916 29.985 hybrid contribution 0.555 -1.134 0.403 1.325 sum -15.657 14.346 -19.513 28.839 Atomic orbital electron populations 1.22552 0.95112 1.02852 1.03048 1.19994 0.92547 0.92472 0.82197 1.21755 1.02277 0.92667 1.02549 1.86555 1.77233 1.29194 1.43157 1.20553 0.95759 0.99283 0.96005 1.21005 0.95532 0.97169 0.98666 1.21162 0.99642 0.99030 0.92302 1.19866 0.95311 0.99478 0.94828 1.20229 0.95365 0.91182 0.90448 1.55786 1.67041 1.31822 1.33256 1.05304 0.75609 0.76872 0.72529 1.93581 1.73362 1.49581 1.78751 1.93565 1.41017 1.85841 1.74787 1.30546 1.15158 1.19248 1.09101 1.21504 1.01643 1.02268 0.89137 1.19059 0.93944 0.90242 0.97514 1.21218 1.30990 1.11655 0.92685 0.92413 1.25020 0.95960 0.96429 0.96971 1.69944 1.35607 1.18861 1.29017 0.86606 0.78618 0.78049 0.84456 1.20123 1.21248 1.20127 1.21158 0.95721 0.96570 0.98459 1.21092 0.99880 0.99787 0.92489 0.91104 0.91448 0.91972 0.91653 0.91557 0.90974 0.77434 0.85292 0.85436 0.89226 0.90611 0.75072 0.85501 0.85242 0.91561 0.91537 0.96122 0.96126 0.92838 0.85448 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.88 8.12 37.16 0.30 -0.58 16 2 C 0.17 1.07 1.24 -91.77 -0.11 0.96 16 3 C -0.14 -0.85 8.82 37.16 0.33 -0.52 16 4 O -0.56 -3.81 11.97 -35.23 -0.42 -4.23 16 5 C -0.12 -0.84 4.81 -104.63 -0.50 -1.35 16 6 C -0.11 -0.82 9.35 -39.58 -0.37 -1.19 16 7 C -0.10 -0.83 9.70 -39.58 -0.38 -1.21 16 8 C -0.09 -0.81 5.28 -104.62 -0.55 -1.36 16 9 C 0.15 1.40 6.26 -5.19 -0.03 1.37 16 10 N -1.12 -11.67 5.88 -11.65 -0.07 -11.74 16 11 S 2.60 36.88 5.46 -107.50 -0.59 36.29 16 12 O -0.96 -16.68 18.08 -57.54 -1.04 -17.72 16 13 O -0.96 -16.36 17.50 -57.54 -1.01 -17.36 16 14 C -0.61 -9.03 6.07 37.16 0.23 -8.80 16 15 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 16 C 0.03 0.77 4.97 -27.89 -0.14 0.63 16 17 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 18 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 21 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.10 -0.84 9.70 -39.58 -0.38 -1.22 16 26 C -0.11 -0.84 9.14 -39.58 -0.36 -1.20 16 27 H 0.07 0.30 6.51 -51.93 -0.34 -0.04 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.38 1.51 9.04 45.56 0.41 1.92 16 34 H 0.13 0.92 7.48 -52.49 -0.39 0.53 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.09 0.83 7.64 -51.93 -0.40 0.44 16 37 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 38 H 0.42 3.82 8.61 -34.47 -0.30 3.53 16 39 H 0.13 1.64 8.14 -51.92 -0.42 1.21 16 40 H 0.13 1.72 8.14 -51.92 -0.42 1.30 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 47 H 0.13 0.71 6.17 -52.49 -0.32 0.38 16 LS Contribution 401.46 15.07 6.05 6.05 Total: -1.00 -35.92 401.46 -10.68 -46.60 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.79 Total: 1.63 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: -2.53 Total: -30.31 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.67 Total: -37.48 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -2.47 Total: -39.32 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 36.88 SS G_CDS: -0.59 Total: 36.29 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.92 -10.68 -46.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186471861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.317 kcal (2) G-P(sol) polarization free energy of solvation -35.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds