Wall clock time and date at job start Sat Apr 11 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46946 * 2 1 4 4 O 1.42898 * 109.47298 * 240.00404 * 2 1 3 5 5 C 1.50696 * 109.47207 * 119.99724 * 2 1 3 6 6 C 1.38238 * 119.99728 * 150.00400 * 5 2 1 7 7 C 1.38235 * 120.00108 * 180.02562 * 6 5 2 8 8 C 1.38243 * 119.99617 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99586 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47014 * 89.99954 * 9 8 7 11 11 S 1.65596 * 120.00034 * 164.99846 * 10 9 8 12 12 O 1.42097 * 104.27822 * 181.07072 * 11 10 9 13 13 O 1.42107 * 104.27703 * 308.92806 * 11 10 9 14 14 C 1.81393 * 104.45000 * 64.99722 * 11 10 9 15 15 C 1.53006 * 109.47382 * 180.02562 * 14 11 10 16 16 C 1.52993 * 109.47256 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.47326 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00001 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00505 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99823 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00320 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47358 * 59.99941 * 21 19 17 23 23 H 1.48495 * 109.47436 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47389 * 300.00278 * 21 19 17 25 25 C 1.38233 * 120.00248 * 0.25361 * 8 7 6 26 26 C 1.38234 * 120.00209 * 330.02806 * 5 2 1 27 27 H 1.08997 * 109.47348 * 299.99365 * 1 2 3 28 28 H 1.09001 * 109.47359 * 60.00058 * 1 2 3 29 29 H 1.09002 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47351 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47044 * 300.00134 * 3 2 1 32 32 H 1.09006 * 109.47112 * 59.99581 * 3 2 1 33 33 H 0.96708 * 113.99704 * 299.99281 * 4 2 1 34 34 H 1.08000 * 120.00578 * 359.97438 * 6 5 2 35 35 H 1.07999 * 120.00165 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.46646 * 209.99280 * 9 8 7 37 37 H 1.09000 * 109.47248 * 329.99998 * 9 8 7 38 38 H 0.96999 * 119.99608 * 345.00138 * 10 9 8 39 39 H 1.09002 * 109.47486 * 299.99813 * 14 11 10 40 40 H 1.09003 * 109.47547 * 60.00357 * 14 11 10 41 41 H 1.09002 * 109.46452 * 300.00195 * 15 14 11 42 42 H 1.08997 * 109.47274 * 59.99945 * 15 14 11 43 43 H 1.09002 * 109.47377 * 299.99417 * 16 15 14 44 44 H 1.09005 * 109.47448 * 59.99638 * 16 15 14 45 45 H 0.96998 * 120.00380 * 179.97438 * 20 19 17 46 46 H 1.08004 * 119.99934 * 179.72684 * 25 8 7 47 47 H 1.07999 * 120.00005 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0323 -0.7103 1.2305 6 6 3.2403 -1.3817 1.1962 7 6 3.7009 -2.0337 2.3247 8 6 2.9533 -2.0149 3.4874 9 6 3.4552 -2.7262 4.7175 10 7 4.2687 -1.8060 5.5160 11 16 4.6427 -2.1800 7.0852 12 8 5.4038 -1.0690 7.5385 13 8 3.3911 -2.5010 7.6768 14 6 5.6862 -3.6586 6.9617 15 6 6.1017 -4.1082 8.3640 16 6 6.9823 -5.3550 8.2598 17 6 7.3921 -5.7975 9.6408 18 1 7.0574 -5.2449 10.5064 19 6 8.1933 -6.9082 9.7995 20 7 8.5995 -7.5820 8.7457 21 14 8.7006 -7.4571 11.5114 22 1 7.4886 -7.7720 12.3098 23 1 9.5554 -8.6671 11.4104 24 1 9.4614 -6.3682 12.1753 25 6 1.7426 -1.3484 3.5199 26 6 1.2850 -0.6910 2.3932 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.7211 -1.5952 -1.2329 34 1 3.8238 -1.3975 0.2876 35 1 4.6444 -2.5585 2.2978 36 1 2.6071 -3.0692 5.3102 37 1 4.0609 -3.5823 4.4204 38 1 4.5882 -0.9775 5.1255 39 1 5.1275 -4.4580 6.4750 40 1 6.5756 -3.4278 6.3754 41 1 6.6602 -3.3089 8.8511 42 1 5.2121 -4.3392 8.9499 43 1 6.4241 -6.1544 7.7725 44 1 7.8719 -5.1236 7.6739 45 1 9.1635 -8.3632 8.8572 46 1 1.1565 -1.3374 4.4270 47 1 0.3413 -0.1665 2.4200 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186471861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:19 Heat of formation + Delta-G solvation = -148.008073 kcal Electronic energy + Delta-G solvation = -26636.429526 eV Core-core repulsion = 22716.250270 eV Total energy + Delta-G solvation = -3920.179256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.95567 -38.63620 -38.16134 -37.05749 -36.45714 -36.12462 -34.15724 -33.65397 -31.85921 -30.94551 -29.64549 -28.27319 -26.66381 -25.61603 -23.57658 -23.04053 -22.41685 -21.04021 -20.36519 -18.79150 -18.63174 -18.44737 -17.68170 -17.15649 -16.72712 -16.52402 -16.36094 -16.17100 -15.69102 -15.60180 -15.42382 -14.79304 -14.49383 -14.43280 -14.25317 -14.04505 -13.85805 -13.50756 -13.42197 -13.23457 -13.18831 -13.12699 -13.11556 -12.96112 -12.92064 -12.72997 -12.64409 -12.62455 -12.35618 -12.15040 -12.02514 -11.73434 -11.59887 -11.38408 -11.13229 -10.98314 -10.56749 -10.40323 -9.83752 -9.63851 -8.22419 -6.33314 -0.75768 0.27105 0.48612 1.40351 1.42707 1.50662 1.82953 2.39951 2.74930 2.81503 3.11033 3.24523 3.29618 3.55367 3.72883 3.79879 3.88533 3.95601 4.05451 4.11681 4.19753 4.38042 4.41174 4.43420 4.54049 4.66929 4.72329 4.73441 4.84105 4.85807 4.88064 4.95249 4.98363 5.07673 5.09520 5.17120 5.21324 5.29509 5.45818 5.47390 5.62613 5.63854 5.66822 5.79856 6.04326 6.06621 6.20133 6.81216 6.82197 7.35859 8.88718 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.001844 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.871131 B =15179.982306 C =15762.089020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.168 3.832 3 C -0.138 4.138 4 O -0.569 6.569 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.107 4.107 8 C -0.102 4.102 9 C 0.145 3.855 10 N -1.106 6.106 11 S 2.633 3.367 12 O -0.994 6.994 13 O -0.989 6.989 14 C -0.609 4.609 15 C -0.107 4.107 16 C 0.031 3.969 17 C -0.554 4.554 18 H 0.060 0.940 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.962 3.038 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.268 1.268 25 C -0.112 4.112 26 C -0.117 4.117 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.389 0.611 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.424 0.576 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.004 0.996 44 H 0.002 0.998 45 H 0.265 0.735 46 H 0.130 0.870 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.020 15.197 -21.008 31.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.127 3.873 3 C -0.195 4.195 4 O -0.377 6.377 5 C -0.115 4.115 6 C -0.131 4.131 7 C -0.126 4.126 8 C -0.104 4.104 9 C 0.020 3.980 10 N -0.867 5.867 11 S 2.728 3.272 12 O -0.984 6.984 13 O -0.979 6.979 14 C -0.740 4.740 15 C -0.146 4.146 16 C -0.008 4.008 17 C -0.592 4.592 18 H 0.078 0.922 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.787 3.213 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.193 1.193 25 C -0.130 4.130 26 C -0.134 4.134 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.238 0.762 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.260 0.740 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.023 0.977 44 H 0.021 0.979 45 H 0.074 0.926 46 H 0.148 0.852 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.028 15.949 -20.321 30.940 hybrid contribution 0.772 -1.262 0.410 1.535 sum -16.256 14.687 -19.911 29.604 Atomic orbital electron populations 1.22523 0.93900 1.03258 1.03559 1.20044 0.93424 0.92189 0.81622 1.21789 1.01578 0.92956 1.03151 1.86529 1.77612 1.30211 1.43336 1.20716 0.95523 0.98841 0.96406 1.21127 0.95873 0.97340 0.98784 1.21310 1.00022 0.99057 0.92175 1.19838 0.95720 1.00137 0.94720 1.20457 0.95545 0.91501 0.90474 1.55392 1.66873 1.32383 1.32053 1.04136 0.74446 0.75666 0.72922 1.93535 1.74024 1.50744 1.80082 1.93530 1.42132 1.86065 1.76142 1.30501 1.16570 1.20589 1.06317 1.21316 1.00757 1.00031 0.92543 1.18962 0.93925 0.92040 0.95828 1.21726 1.31224 1.12057 0.94158 0.92182 1.25930 0.95953 0.96545 1.01148 1.70059 1.36257 1.19350 1.31221 0.85539 0.78508 0.77781 0.79485 1.19229 1.20642 1.19316 1.21325 0.95870 0.96812 0.99019 1.21290 1.00510 0.99558 0.92088 0.90283 0.91256 0.91625 0.92774 0.91217 0.90165 0.76178 0.84986 0.84442 0.89363 0.88673 0.74020 0.83397 0.83533 0.91684 0.91434 0.97719 0.97917 0.92645 0.85179 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 8.12 71.98 0.58 -0.81 16 2 C 0.17 1.89 1.24 -11.54 -0.01 1.87 16 3 C -0.14 -1.57 8.82 71.98 0.64 -0.94 16 4 O -0.57 -7.12 11.97 -148.98 -1.78 -8.90 16 5 C -0.11 -1.50 4.81 -19.87 -0.10 -1.60 16 6 C -0.11 -1.61 9.35 22.27 0.21 -1.40 16 7 C -0.11 -1.56 9.70 22.27 0.22 -1.34 16 8 C -0.10 -1.62 5.28 -19.86 -0.10 -1.72 16 9 C 0.15 2.39 6.26 85.63 0.54 2.93 16 10 N -1.11 -21.20 5.88 -190.77 -1.12 -22.32 16 11 S 2.63 71.70 5.46 -56.49 -0.31 71.39 16 12 O -0.99 -33.64 18.08 -127.65 -2.31 -35.95 16 13 O -0.99 -32.68 17.50 -127.65 -2.23 -34.92 16 14 C -0.61 -17.35 6.07 71.98 0.44 -16.91 16 15 C -0.11 -4.27 5.16 30.59 0.16 -4.12 16 16 C 0.03 1.57 4.97 29.85 0.15 1.72 16 17 C -0.55 -31.36 9.11 25.60 0.23 -31.13 16 18 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 19 C 0.00 0.14 5.46 84.65 0.46 0.61 16 20 N -0.93 -55.45 13.29 21.45 0.28 -55.17 16 21 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 C -0.11 -1.70 9.70 22.27 0.22 -1.49 16 26 C -0.12 -1.52 9.14 22.27 0.20 -1.31 16 27 H 0.08 0.50 6.51 -2.39 -0.02 0.48 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.39 2.64 9.04 -74.05 -0.67 1.97 16 34 H 0.13 1.75 7.48 -2.91 -0.02 1.73 16 35 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.09 1.51 7.64 -2.39 -0.02 1.49 16 37 H 0.10 1.21 8.09 -2.39 -0.02 1.19 16 38 H 0.42 7.07 8.61 -96.75 -0.83 6.24 16 39 H 0.15 3.56 8.14 -2.39 -0.02 3.54 16 40 H 0.15 3.67 8.14 -2.39 -0.02 3.65 16 41 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 44 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 45 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 46 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 47 H 0.14 1.29 6.17 -2.91 -0.02 1.28 16 Total: -1.00 -76.33 401.46 -2.15 -78.47 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -0.53 Total: 16.94 kcal Atomic # 6 Polarization: -59.47 SS G_CDS: 3.82 Total: -55.64 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -0.84 Total: -77.48 kcal Atomic # 8 Polarization: -73.44 SS G_CDS: -6.32 Total: -79.77 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 71.70 SS G_CDS: -0.31 Total: 71.39 kcal Total: -76.33 -2.15 -78.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186471861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.534 kcal (2) G-P(sol) polarization free energy of solvation -76.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds