Wall clock time and date at job start Sat Apr 11 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46699 * 2 1 4 4 C 1.38065 * 126.31032 * 275.14268 * 3 2 1 5 5 C 1.47410 * 126.41061 * 0.04200 * 4 3 2 6 6 O 1.21610 * 119.99628 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00113 * 179.97438 * 5 4 3 8 8 C 1.47067 * 136.05792 * 359.62516 * 7 5 4 9 9 C 1.53234 * 88.08265 * 207.20557 * 8 7 5 10 10 O 1.42901 * 114.19754 * 87.73224 * 9 8 7 11 11 C 1.50706 * 114.32635 * 220.46983 * 9 8 7 12 12 H 1.07996 * 119.99615 * 93.75979 * 11 9 8 13 13 C 1.37882 * 120.00005 * 273.76085 * 11 9 8 14 14 N 1.31510 * 119.99654 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99782 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46566 * 90.00272 * 15 13 11 17 17 H 1.48500 * 109.46978 * 209.99811 * 15 13 11 18 18 H 1.48491 * 109.47323 * 330.00389 * 15 13 11 19 19 C 1.47062 * 136.05624 * 180.02562 * 7 5 4 20 20 C 1.41332 * 107.18021 * 180.02562 * 4 3 2 21 21 N 1.30474 * 108.06875 * 359.72074 * 20 4 3 22 22 N 1.34538 * 126.31142 * 95.14791 * 3 2 1 23 23 C 1.40158 * 125.77092 * 0.02562 * 22 3 2 24 24 C 1.38841 * 120.06753 * 44.40794 * 23 22 3 25 25 C 1.38116 * 119.93275 * 179.97438 * 24 23 22 26 26 C 1.38280 * 120.06718 * 0.02562 * 25 24 23 27 27 C 1.38286 * 120.13602 * 359.97438 * 26 25 24 28 28 C 1.38113 * 120.06375 * 0.02562 * 27 26 25 29 29 H 1.08992 * 109.47265 * 304.98335 * 1 2 3 30 30 H 1.08999 * 109.46965 * 64.98595 * 1 2 3 31 31 H 1.08998 * 109.46876 * 184.98145 * 1 2 3 32 32 H 1.09001 * 109.47492 * 240.00201 * 2 1 3 33 33 H 1.09002 * 109.46719 * 119.99468 * 2 1 3 34 34 H 1.09000 * 113.46648 * 321.94202 * 8 7 5 35 35 H 1.08999 * 113.46303 * 92.37488 * 8 7 5 36 36 H 0.96693 * 114.00376 * 86.30098 * 10 9 8 37 37 H 0.97005 * 119.99745 * 179.97438 * 14 13 11 38 38 H 1.09005 * 113.46528 * 267.62051 * 19 7 5 39 39 H 1.08997 * 113.47558 * 38.00010 * 19 7 5 40 40 H 1.08003 * 125.96517 * 180.02562 * 20 4 3 41 41 H 1.08003 * 120.03689 * 359.96085 * 24 23 22 42 42 H 1.07999 * 119.96866 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.93597 * 179.72239 * 26 25 24 44 44 H 1.07995 * 119.96642 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.03271 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2107 2.2249 -1.1081 5 6 1.9450 1.8544 -2.5099 6 8 1.5267 0.7441 -2.7765 7 7 2.1656 2.7462 -3.4961 8 6 2.6416 4.1352 -3.5808 9 6 1.8302 4.2801 -4.8725 10 8 0.4738 4.6819 -4.6702 11 6 2.5263 5.0589 -5.9589 12 1 3.1036 4.5401 -6.7098 13 6 2.4263 6.4336 -5.9939 14 7 1.7237 7.0652 -5.0791 15 14 3.2898 7.3988 -7.3401 16 1 2.3782 7.5510 -8.5024 17 1 3.6635 8.7406 -6.8251 18 1 4.5138 6.6722 -7.7628 19 6 2.0297 2.7610 -4.9603 20 6 2.6954 3.4698 -0.6468 21 7 2.7922 3.4100 0.6529 22 7 2.3895 2.1396 1.0797 23 6 2.3591 1.6930 2.4079 24 6 2.8393 0.4303 2.7284 25 6 2.8085 -0.0067 4.0382 26 6 2.2995 0.8116 5.0299 27 6 1.8205 2.0698 4.7138 28 6 1.8486 2.5124 3.4058 29 1 -0.3633 0.5891 0.8419 30 1 -0.3633 0.4345 -0.9313 31 1 -0.3633 -1.0238 0.0892 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.2808 4.7679 -2.7699 35 1 3.7179 4.2166 -3.7327 36 1 0.3512 5.6395 -4.6154 37 1 1.6536 8.0325 -5.1035 38 1 2.9413 2.4724 -5.4838 39 1 1.1503 2.2269 -5.3201 40 1 2.9381 4.3235 -1.2623 41 1 3.2364 -0.2096 1.9543 42 1 3.1823 -0.9887 4.2882 43 1 2.2723 0.4660 6.0527 44 1 1.4232 2.7065 5.4904 45 1 1.4748 3.4953 3.1596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193141024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:29 Heat of formation + Delta-G solvation = 65.024624 kcal Electronic energy + Delta-G solvation = -29404.687088 eV Core-core repulsion = 25390.594423 eV Total energy + Delta-G solvation = -4014.092665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.75508 -39.55744 -39.02660 -37.16910 -34.44584 -33.87370 -33.29131 -32.17606 -31.35117 -29.78278 -29.34526 -28.14318 -25.55517 -25.23308 -24.05403 -23.33659 -22.84794 -21.79655 -20.47319 -19.67424 -18.30037 -17.73707 -17.27912 -16.70814 -16.04164 -15.72650 -15.48157 -15.00309 -14.92697 -14.74886 -14.38382 -14.19394 -14.13553 -14.06520 -13.70388 -13.35962 -13.05870 -12.90618 -12.60130 -12.36541 -12.33777 -11.99090 -11.92001 -11.65033 -11.54638 -11.53866 -11.13267 -11.05006 -10.93243 -10.63888 -10.46113 -10.23559 -10.09904 -9.60555 -9.37135 -9.17034 -8.93967 -8.75794 -8.42312 -8.33216 -7.76053 -6.39428 -4.49619 0.62856 0.95595 1.74396 2.23355 2.37626 3.15671 3.23787 3.26116 3.32852 3.65896 3.92280 4.19325 4.41550 4.44123 4.52888 4.69798 4.76101 4.83776 4.89613 4.98081 5.15578 5.17482 5.28732 5.36153 5.42290 5.56672 5.58608 5.67476 5.70313 5.85311 5.94648 5.95178 6.01006 6.08830 6.16258 6.22271 6.30430 6.38854 6.44662 6.48138 6.53425 6.68659 6.78088 7.04454 7.13020 7.59255 7.64025 7.81818 8.52709 8.57302 8.87557 9.21840 9.51079 10.67146 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.002670 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.600241 B =10482.562695 C =11306.605549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C 0.155 3.845 4 C -0.267 4.267 5 C 0.615 3.385 6 O -0.566 6.566 7 N -0.629 5.629 8 C 0.067 3.933 9 C 0.240 3.760 10 O -0.571 6.571 11 C -0.532 4.532 12 H 0.073 0.927 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.908 3.092 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.111 3.889 20 C 0.091 3.909 21 N -0.296 5.296 22 N -0.324 5.324 23 C 0.154 3.846 24 C -0.126 4.126 25 C -0.101 4.101 26 C -0.121 4.121 27 C -0.103 4.103 28 C -0.106 4.106 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.393 0.607 37 H 0.274 0.726 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.201 0.799 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.647 -10.160 17.583 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C 0.026 3.974 4 C -0.280 4.280 5 C 0.405 3.595 6 O -0.448 6.448 7 N -0.361 5.361 8 C -0.056 4.056 9 C 0.198 3.802 10 O -0.384 6.384 11 C -0.571 4.571 12 H 0.091 0.909 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.735 3.265 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.195 1.195 19 C -0.011 4.011 20 C -0.097 4.097 21 N -0.112 5.112 22 N -0.099 5.099 23 C 0.063 3.937 24 C -0.146 4.146 25 C -0.120 4.120 26 C -0.139 4.139 27 C -0.122 4.122 28 C -0.125 4.125 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.250 0.750 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.217 0.783 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.559 -10.686 18.790 21.672 hybrid contribution 0.493 1.073 -1.289 1.748 sum 2.052 -9.613 17.501 20.073 Atomic orbital electron populations 1.21616 0.93299 1.02023 1.02726 1.20578 0.97521 0.88289 1.04472 1.21574 0.94820 0.95342 0.85630 1.20098 1.18098 0.95874 0.93964 1.16524 0.77589 0.82870 0.82496 1.90670 1.49209 1.21060 1.83872 1.49395 1.63690 1.15310 1.07718 1.24280 1.00213 0.79273 1.01814 1.19484 0.81321 0.89108 0.90258 1.86053 1.25641 1.31583 1.95094 1.21432 1.31593 0.91638 1.12404 0.90921 1.25076 0.94516 0.97650 0.95821 1.69264 1.40635 1.09886 1.34051 0.86319 0.79837 0.78948 0.81354 1.20269 1.20936 1.19547 1.23302 1.00652 0.98435 0.78744 1.24675 0.95385 0.98084 0.91583 1.77337 1.23285 0.97059 1.13533 1.45563 1.50002 1.10495 1.03793 1.17447 1.00817 0.94488 0.80900 1.21183 1.00488 0.95210 0.97759 1.21019 0.99179 1.00136 0.91671 1.21273 0.98686 0.94236 0.99703 1.21091 0.99194 0.96303 0.95575 1.21115 0.98825 1.00330 0.92261 0.93396 0.91107 0.91690 0.87204 0.90622 0.91579 0.89923 0.75010 0.91578 0.89712 0.91492 0.78281 0.84865 0.84938 0.85348 0.85015 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 37.16 0.37 -1.44 16 2 C -0.07 -0.94 5.41 -27.88 -0.15 -1.09 16 3 C 0.15 2.50 6.08 -81.47 -0.49 2.01 16 4 C -0.27 -4.95 6.13 -105.05 -0.64 -5.59 16 5 C 0.61 12.93 8.06 -12.53 -0.10 12.83 16 6 O -0.57 -12.66 15.49 5.27 0.08 -12.57 16 7 N -0.63 -13.42 3.69 -186.70 -0.69 -14.11 16 8 C 0.07 1.42 6.51 -8.65 -0.06 1.36 16 9 C 0.24 5.69 1.57 -91.40 -0.14 5.54 16 10 O -0.57 -14.66 13.53 -35.23 -0.48 -15.14 16 11 C -0.53 -13.09 8.69 -34.44 -0.30 -13.39 16 12 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 13 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 14 N -0.90 -22.44 11.01 55.43 0.61 -21.83 16 15 Si 0.91 19.22 29.54 -169.99 -5.02 14.20 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 C 0.11 2.40 8.03 -8.53 -0.07 2.33 16 20 C 0.09 1.60 11.14 -16.95 -0.19 1.41 16 21 N -0.30 -5.08 12.35 30.88 0.38 -4.69 16 22 N -0.32 -5.02 3.66 -6.51 -0.02 -5.04 16 23 C 0.15 1.95 6.14 -83.60 -0.51 1.44 16 24 C -0.13 -1.28 8.29 -39.40 -0.33 -1.61 16 25 C -0.10 -0.78 10.04 -39.61 -0.40 -1.18 16 26 C -0.12 -0.87 10.04 -39.55 -0.40 -1.26 16 27 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 28 C -0.11 -1.18 9.86 -39.40 -0.39 -1.57 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.11 7.89 -51.93 -0.41 0.70 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.11 1.62 6.79 -51.93 -0.35 1.26 16 33 H 0.08 0.81 4.90 -51.93 -0.25 0.55 16 34 H 0.07 1.38 6.17 -51.93 -0.32 1.06 16 35 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 36 H 0.39 10.21 6.32 45.56 0.29 10.50 16 37 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 38 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.20 3.35 5.22 -52.48 -0.27 3.07 16 41 H 0.13 1.26 6.44 -52.48 -0.34 0.92 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -29.47 374.62 -8.79 -38.26 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -5.01 Total: 15.07 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -4.30 Total: 0.21 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.28 Total: -45.67 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.40 Total: -27.71 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.47 -8.79 -38.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193141024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.287 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds