Wall clock time and date at job start Sat Apr 11 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46699 * 2 1 4 4 C 1.38065 * 126.31032 * 275.14268 * 3 2 1 5 5 C 1.47410 * 126.41061 * 0.04200 * 4 3 2 6 6 O 1.21610 * 119.99628 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00113 * 179.97438 * 5 4 3 8 8 C 1.47067 * 136.05792 * 359.62516 * 7 5 4 9 9 C 1.53234 * 88.08265 * 207.20557 * 8 7 5 10 10 O 1.42901 * 114.19754 * 87.73224 * 9 8 7 11 11 C 1.50706 * 114.32635 * 220.46983 * 9 8 7 12 12 H 1.07996 * 119.99615 * 93.75979 * 11 9 8 13 13 C 1.37882 * 120.00005 * 273.76085 * 11 9 8 14 14 N 1.31510 * 119.99654 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 119.99782 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46566 * 90.00272 * 15 13 11 17 17 H 1.48500 * 109.46978 * 209.99811 * 15 13 11 18 18 H 1.48491 * 109.47323 * 330.00389 * 15 13 11 19 19 C 1.47062 * 136.05624 * 180.02562 * 7 5 4 20 20 C 1.41332 * 107.18021 * 180.02562 * 4 3 2 21 21 N 1.30474 * 108.06875 * 359.72074 * 20 4 3 22 22 N 1.34538 * 126.31142 * 95.14791 * 3 2 1 23 23 C 1.40158 * 125.77092 * 0.02562 * 22 3 2 24 24 C 1.38841 * 120.06753 * 44.40794 * 23 22 3 25 25 C 1.38116 * 119.93275 * 179.97438 * 24 23 22 26 26 C 1.38280 * 120.06718 * 0.02562 * 25 24 23 27 27 C 1.38286 * 120.13602 * 359.97438 * 26 25 24 28 28 C 1.38113 * 120.06375 * 0.02562 * 27 26 25 29 29 H 1.08992 * 109.47265 * 304.98335 * 1 2 3 30 30 H 1.08999 * 109.46965 * 64.98595 * 1 2 3 31 31 H 1.08998 * 109.46876 * 184.98145 * 1 2 3 32 32 H 1.09001 * 109.47492 * 240.00201 * 2 1 3 33 33 H 1.09002 * 109.46719 * 119.99468 * 2 1 3 34 34 H 1.09000 * 113.46648 * 321.94202 * 8 7 5 35 35 H 1.08999 * 113.46303 * 92.37488 * 8 7 5 36 36 H 0.96693 * 114.00376 * 86.30098 * 10 9 8 37 37 H 0.97005 * 119.99745 * 179.97438 * 14 13 11 38 38 H 1.09005 * 113.46528 * 267.62051 * 19 7 5 39 39 H 1.08997 * 113.47558 * 38.00010 * 19 7 5 40 40 H 1.08003 * 125.96517 * 180.02562 * 20 4 3 41 41 H 1.08003 * 120.03689 * 359.96085 * 24 23 22 42 42 H 1.07999 * 119.96866 * 180.02562 * 25 24 23 43 43 H 1.07999 * 119.93597 * 179.72239 * 26 25 24 44 44 H 1.07995 * 119.96642 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.03271 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2107 2.2249 -1.1081 5 6 1.9450 1.8544 -2.5099 6 8 1.5267 0.7441 -2.7765 7 7 2.1656 2.7462 -3.4961 8 6 2.6416 4.1352 -3.5808 9 6 1.8302 4.2801 -4.8725 10 8 0.4738 4.6819 -4.6702 11 6 2.5263 5.0589 -5.9589 12 1 3.1036 4.5401 -6.7098 13 6 2.4263 6.4336 -5.9939 14 7 1.7237 7.0652 -5.0791 15 14 3.2898 7.3988 -7.3401 16 1 2.3782 7.5510 -8.5024 17 1 3.6635 8.7406 -6.8251 18 1 4.5138 6.6722 -7.7628 19 6 2.0297 2.7610 -4.9603 20 6 2.6954 3.4698 -0.6468 21 7 2.7922 3.4100 0.6529 22 7 2.3895 2.1396 1.0797 23 6 2.3591 1.6930 2.4079 24 6 2.8393 0.4303 2.7284 25 6 2.8085 -0.0067 4.0382 26 6 2.2995 0.8116 5.0299 27 6 1.8205 2.0698 4.7138 28 6 1.8486 2.5124 3.4058 29 1 -0.3633 0.5891 0.8419 30 1 -0.3633 0.4345 -0.9313 31 1 -0.3633 -1.0238 0.0892 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 2.2808 4.7679 -2.7699 35 1 3.7179 4.2166 -3.7327 36 1 0.3512 5.6395 -4.6154 37 1 1.6536 8.0325 -5.1035 38 1 2.9413 2.4724 -5.4838 39 1 1.1503 2.2269 -5.3201 40 1 2.9381 4.3235 -1.2623 41 1 3.2364 -0.2096 1.9543 42 1 3.1823 -0.9887 4.2882 43 1 2.2723 0.4660 6.0527 44 1 1.4232 2.7065 5.4904 45 1 1.4748 3.4953 3.1596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193141024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:28 Heat of formation + Delta-G solvation = 46.911966 kcal Electronic energy + Delta-G solvation = -29405.472512 eV Core-core repulsion = 25390.594423 eV Total energy + Delta-G solvation = -4014.878089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.99080 -41.11766 -39.97492 -38.85716 -35.95964 -35.36110 -34.34471 -34.10178 -32.05194 -31.22828 -30.40000 -29.65033 -27.26387 -26.94124 -25.26367 -24.27429 -23.76422 -23.12241 -21.73336 -21.12221 -19.88378 -19.34294 -18.67069 -17.57785 -17.33784 -17.18370 -16.94837 -16.67279 -16.24234 -16.08872 -15.82502 -15.43642 -15.21472 -15.09293 -14.91662 -14.56567 -14.39343 -14.24635 -14.01302 -13.87650 -13.66301 -13.41779 -13.38468 -12.85410 -12.76390 -12.69892 -12.62480 -12.31194 -12.26998 -12.20044 -12.11103 -11.77122 -11.36040 -11.15059 -10.91709 -10.62462 -10.23265 -10.10381 -10.06084 -9.60324 -9.36216 -8.25520 -6.42311 -0.26734 0.27351 0.57883 0.98002 1.11319 1.48328 1.51595 1.60728 2.01739 2.34358 2.43074 2.63313 2.96632 3.29707 3.36659 3.67866 3.72871 3.82093 3.85150 3.90221 4.12135 4.16551 4.17723 4.21012 4.35979 4.38752 4.43035 4.46248 4.53288 4.66820 4.69187 4.79813 4.84268 4.90256 4.95685 4.98522 5.05752 5.17635 5.20807 5.26651 5.30402 5.33164 5.44561 5.69187 5.74963 5.93021 6.02930 6.30806 6.63750 6.88373 7.21027 7.31984 7.50997 8.80575 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020087 B = 0.002670 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.600241 B =10482.562695 C =11306.605549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 C 0.165 3.835 4 C -0.301 4.301 5 C 0.611 3.389 6 O -0.586 6.586 7 N -0.634 5.634 8 C 0.082 3.918 9 C 0.220 3.780 10 O -0.586 6.586 11 C -0.549 4.549 12 H 0.076 0.924 13 C 0.031 3.969 14 N -0.918 5.918 15 Si 0.970 3.030 16 H -0.279 1.279 17 H -0.282 1.282 18 H -0.265 1.265 19 C 0.113 3.887 20 C 0.085 3.915 21 N -0.310 5.310 22 N -0.313 5.313 23 C 0.110 3.890 24 C -0.131 4.131 25 C -0.094 4.094 26 C -0.106 4.106 27 C -0.101 4.101 28 C -0.122 4.122 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.389 0.611 37 H 0.276 0.724 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.200 0.800 41 H 0.138 0.862 42 H 0.167 0.833 43 H 0.166 0.834 44 H 0.157 0.843 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.568 -11.676 20.208 23.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C 0.034 3.966 4 C -0.315 4.315 5 C 0.403 3.597 6 O -0.469 6.469 7 N -0.365 5.365 8 C -0.041 4.041 9 C 0.178 3.822 10 O -0.399 6.399 11 C -0.587 4.587 12 H 0.094 0.906 13 C -0.169 4.169 14 N -0.559 5.559 15 Si 0.796 3.204 16 H -0.205 1.205 17 H -0.208 1.208 18 H -0.189 1.189 19 C -0.009 4.009 20 C -0.103 4.103 21 N -0.128 5.128 22 N -0.086 5.086 23 C 0.020 3.980 24 C -0.151 4.151 25 C -0.112 4.112 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.142 4.142 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.244 0.756 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.074 0.926 40 H 0.217 0.783 41 H 0.155 0.845 42 H 0.184 0.816 43 H 0.183 0.817 44 H 0.174 0.826 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.489 -12.203 21.446 24.800 hybrid contribution 0.168 1.458 -1.885 2.389 sum 2.658 -10.745 19.560 22.475 Atomic orbital electron populations 1.21569 0.92872 1.03597 1.01012 1.20672 0.97709 0.86693 1.05409 1.21949 0.93264 0.96189 0.85220 1.19999 1.21027 0.97139 0.93335 1.16886 0.76944 0.82527 0.83312 1.90638 1.50161 1.21767 1.84367 1.49411 1.64064 1.15454 1.07617 1.24081 1.00402 0.79192 1.00410 1.19761 0.80708 0.90151 0.91541 1.86037 1.27328 1.31228 1.95313 1.21653 1.31945 0.92195 1.12895 0.90560 1.25774 0.95085 0.98411 0.97628 1.69333 1.41258 1.10132 1.35135 0.85357 0.78855 0.77578 0.78656 1.20461 1.20760 1.18893 1.23309 1.01095 0.97065 0.79474 1.24634 0.95792 0.97971 0.91877 1.77259 1.23747 0.98612 1.13140 1.45759 1.48386 1.09547 1.04927 1.17908 1.04095 0.96278 0.79671 1.21353 1.00373 0.94083 0.99281 1.21454 0.97892 1.01486 0.90402 1.21758 0.96160 0.93147 1.01371 1.21421 0.98573 0.97320 0.94643 1.21172 0.99712 0.99798 0.93501 0.93026 0.94466 0.88784 0.88496 0.87290 0.91853 0.88699 0.75559 0.91411 0.87729 0.92609 0.78315 0.84453 0.81569 0.81693 0.82581 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 9.89 71.98 0.71 -2.66 16 2 C -0.07 -1.74 5.41 29.85 0.16 -1.58 16 3 C 0.16 5.38 6.08 42.10 0.26 5.64 16 4 C -0.30 -11.59 6.13 -20.14 -0.12 -11.71 16 5 C 0.61 26.63 8.06 86.66 0.70 27.33 16 6 O -0.59 -27.04 15.49 -4.06 -0.06 -27.10 16 7 N -0.63 -27.85 3.69 -863.33 -3.19 -31.04 16 8 C 0.08 3.56 6.51 83.09 0.54 4.10 16 9 C 0.22 10.65 1.57 -11.30 -0.02 10.64 16 10 O -0.59 -31.22 13.53 -148.98 -2.02 -33.23 16 11 C -0.55 -27.20 8.69 25.60 0.22 -26.98 16 12 H 0.08 3.63 7.81 -2.91 -0.02 3.61 16 13 C 0.03 1.54 5.39 84.66 0.46 1.99 16 14 N -0.92 -46.48 11.01 21.45 0.24 -46.25 16 15 Si 0.97 39.30 29.54 68.60 2.03 41.33 16 16 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 19 C 0.11 5.01 8.03 83.17 0.67 5.68 16 20 C 0.08 3.12 11.14 85.66 0.95 4.07 16 21 N -0.31 -10.99 12.35 -56.23 -0.69 -11.69 16 22 N -0.31 -9.75 3.66 -174.51 -0.64 -10.39 16 23 C 0.11 2.67 6.14 38.10 0.23 2.91 16 24 C -0.13 -2.32 8.29 22.39 0.19 -2.14 16 25 C -0.09 -1.03 10.04 22.25 0.22 -0.81 16 26 C -0.11 -1.03 10.04 22.29 0.22 -0.80 16 27 C -0.10 -1.37 10.04 22.25 0.22 -1.15 16 28 C -0.12 -2.62 9.86 22.39 0.22 -2.39 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.19 7.89 -2.39 -0.02 1.17 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.10 2.84 6.79 -2.39 -0.02 2.83 16 33 H 0.11 2.09 4.90 -2.39 -0.01 2.08 16 34 H 0.06 2.76 6.17 -2.39 -0.01 2.74 16 35 H 0.10 3.84 8.10 -2.39 -0.02 3.82 16 36 H 0.39 20.96 6.32 -74.06 -0.47 20.49 16 37 H 0.28 13.26 8.31 -92.70 -0.77 12.49 16 38 H 0.10 4.16 8.10 -2.38 -0.02 4.14 16 39 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.20 7.06 5.22 -2.91 -0.02 7.05 16 41 H 0.14 2.25 6.44 -2.91 -0.02 2.23 16 42 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 43 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 44 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 45 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -65.75 374.62 2.08 -63.67 By element: Atomic # 1 Polarization: 41.98 SS G_CDS: 0.57 Total: 42.55 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 5.84 Total: 12.14 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -4.28 Total: -99.36 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: -2.08 Total: -60.33 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -65.75 2.08 -63.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193141024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.586 kcal (2) G-P(sol) polarization free energy of solvation -65.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds