Wall clock time and date at job start Sat Apr 11 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39870 * 126.03770 * 2 1 4 4 N 1.30837 * 108.20282 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20315 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.03512 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47174 * 305.02014 * 6 5 4 8 8 N 1.46501 * 109.47174 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00429 * 180.02562 * 8 7 6 10 10 O 1.21725 * 119.99706 * 0.02562 * 9 8 7 11 11 C 1.46250 * 120.00486 * 180.02562 * 9 8 7 12 12 C 1.35028 * 119.99839 * 173.21151 * 11 9 8 13 13 C 1.46955 * 120.00439 * 348.68502 * 12 11 9 14 14 C 1.40022 * 120.09748 * 316.41019 * 13 12 11 15 15 C 1.37602 * 119.89380 * 179.69541 * 14 13 12 16 16 C 1.39177 * 120.10302 * 0.59663 * 15 14 13 17 17 O 1.35574 * 119.89975 * 179.69679 * 16 15 14 18 18 C 1.34780 * 116.99978 * 174.33883 * 17 16 15 19 19 H 1.08002 * 119.99544 * 5.05906 * 18 17 16 20 20 C 1.38712 * 119.99914 * 185.06308 * 18 17 16 21 21 N 1.31507 * 119.99958 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00032 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47167 * 90.00405 * 22 20 18 24 24 H 1.48503 * 109.47022 * 209.99927 * 22 20 18 25 25 H 1.48496 * 109.47397 * 330.00376 * 22 20 18 26 26 C 1.39178 * 120.20039 * 359.67517 * 16 15 14 27 27 C 1.37594 * 120.10347 * 0.02562 * 26 16 15 28 28 C 1.34948 * 107.92424 * 359.75494 * 5 4 3 29 29 H 1.09000 * 109.47361 * 90.02208 * 1 2 3 30 30 H 1.08999 * 109.47264 * 330.02560 * 1 2 3 31 31 H 1.09002 * 109.47413 * 210.03000 * 1 2 3 32 32 H 1.08001 * 125.90057 * 359.95509 * 3 2 1 33 33 H 1.09000 * 109.47467 * 65.02710 * 6 5 4 34 34 H 1.09007 * 109.46807 * 185.02005 * 6 5 4 35 35 H 1.08996 * 109.47723 * 300.00236 * 7 6 5 36 36 H 1.09001 * 109.46607 * 60.00483 * 7 6 5 37 37 H 0.97002 * 120.00202 * 359.97438 * 8 7 6 38 38 H 1.07992 * 120.00039 * 353.21544 * 11 9 8 39 39 H 1.08004 * 119.99253 * 168.68508 * 12 11 9 40 40 H 1.08005 * 120.05677 * 359.97438 * 14 13 12 41 41 H 1.08002 * 119.94694 * 180.27206 * 15 14 13 42 42 H 0.97005 * 120.00507 * 179.97438 * 21 20 18 43 43 H 1.07995 * 119.94825 * 179.97438 * 26 16 15 44 44 H 1.07999 * 120.05442 * 180.02562 * 27 26 16 45 45 H 1.08004 * 126.12314 * 180.24107 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3298 1.1310 0.0000 4 7 3.5753 0.7303 0.0006 5 7 3.5843 -0.6705 0.0015 6 6 4.7745 -1.5247 0.0029 7 6 5.6723 -1.1504 -1.1780 8 7 6.8628 -2.0042 -1.1763 9 6 7.8018 -1.8532 -2.1312 10 8 7.6609 -1.0071 -2.9949 11 6 8.9900 -2.7059 -2.1298 12 6 9.8620 -2.6504 -3.1593 13 6 9.5031 -1.9292 -4.3883 14 6 8.2258 -2.0782 -4.9423 15 6 7.8920 -1.3961 -6.0898 16 6 8.8259 -0.5687 -6.7066 17 8 8.4947 0.0966 -7.8404 18 6 9.3998 0.9706 -8.3236 19 1 10.3706 1.0553 -7.8579 20 6 9.0844 1.7614 -9.4187 21 7 9.9674 2.6145 -9.8898 22 14 7.4055 1.6144 -10.2244 23 1 6.4627 2.5642 -9.5807 24 1 7.5204 1.9343 -11.6700 25 1 6.8986 0.2280 -10.0630 26 6 10.0985 -0.4220 -6.1627 27 6 10.4392 -1.0954 -5.0122 28 6 2.3031 -1.0941 0.0070 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 0.8902 0.5134 31 1 -0.3634 -0.8897 0.5143 32 1 1.9950 2.1578 -0.0007 33 1 5.3221 -1.3835 0.9347 34 1 4.4728 -2.5684 -0.0865 35 1 5.1248 -1.2917 -2.1099 36 1 5.9740 -0.1068 -1.0885 37 1 6.9757 -2.6777 -0.4874 38 1 9.1699 -3.3800 -1.3055 39 1 10.8234 -3.1361 -3.0793 40 1 7.5021 -2.7240 -4.4672 41 1 6.9056 -1.5070 -6.5153 42 1 9.7470 3.1673 -10.6559 43 1 10.8201 0.2207 -6.6449 44 1 11.4269 -0.9806 -4.5906 45 1 1.9724 -2.1222 0.0128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255388801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:36 Heat of formation + Delta-G solvation = 73.402873 kcal Electronic energy + Delta-G solvation = -27683.545399 eV Core-core repulsion = 23669.816042 eV Total energy + Delta-G solvation = -4013.729357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49364 -39.86804 -38.88666 -36.84088 -35.69662 -33.48553 -33.11113 -32.28853 -31.86204 -30.21817 -29.68888 -28.14936 -26.36803 -25.37200 -24.21214 -22.58735 -21.93290 -21.22148 -20.91595 -20.49863 -19.31184 -17.83126 -17.50471 -17.20983 -16.72135 -16.26966 -15.64610 -15.12686 -14.83287 -14.60727 -14.53430 -14.25278 -13.85744 -13.77989 -13.68287 -13.49691 -13.44294 -13.23838 -13.09082 -12.85573 -12.58853 -12.33727 -12.27836 -12.20458 -12.10395 -11.90722 -11.46561 -10.95904 -10.78490 -10.76972 -10.67281 -10.14650 -9.73875 -9.59897 -9.49226 -9.23913 -9.14239 -8.75801 -8.62304 -8.02891 -6.99460 -6.41716 -4.05528 1.13913 1.58598 2.06087 2.32353 2.53408 2.59954 3.23670 3.25468 3.28340 3.42220 3.52826 4.06710 4.25051 4.36387 4.47849 4.61087 4.68897 4.72574 4.89001 4.97308 5.00151 5.13538 5.14290 5.14845 5.39581 5.42982 5.48712 5.55010 5.65325 5.68053 5.74352 5.75516 5.85686 6.17013 6.22643 6.25628 6.35017 6.40562 6.48621 6.65062 6.69591 6.91255 7.16935 7.29843 7.37369 7.42029 7.49988 7.66908 7.84637 8.06374 8.40898 8.93419 9.57506 10.65570 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009378 B = 0.002469 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.063272 B =11336.131072 C =13751.076833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.242 4.242 3 C 0.050 3.950 4 N -0.287 5.287 5 N -0.372 5.372 6 C 0.128 3.872 7 C 0.112 3.888 8 N -0.737 5.737 9 C 0.540 3.460 10 O -0.506 6.506 11 C -0.265 4.265 12 C 0.029 3.971 13 C -0.184 4.184 14 C 0.010 3.990 15 C -0.202 4.202 16 C 0.177 3.823 17 O -0.212 6.212 18 C -0.388 4.388 19 H 0.108 0.892 20 C 0.064 3.936 21 N -0.876 5.876 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.238 4.238 27 C -0.042 4.042 28 C 0.053 3.947 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.183 0.817 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.280 0.720 43 H 0.133 0.867 44 H 0.109 0.891 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.470 -12.889 23.140 29.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.254 4.254 3 C -0.137 4.137 4 N -0.108 5.108 5 N -0.154 5.154 6 C 0.005 3.995 7 C -0.013 4.013 8 N -0.392 5.392 9 C 0.330 3.670 10 O -0.382 6.382 11 C -0.286 4.286 12 C 0.009 3.991 13 C -0.184 4.184 14 C -0.009 4.009 15 C -0.222 4.222 16 C 0.124 3.876 17 O -0.116 6.116 18 C -0.463 4.463 19 H 0.126 0.874 20 C -0.140 4.140 21 N -0.514 5.514 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.257 4.257 27 C -0.061 4.061 28 C -0.092 4.092 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.200 0.800 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.090 0.910 43 H 0.150 0.850 44 H 0.127 0.873 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.369 -11.809 22.157 27.562 hybrid contribution -1.303 -0.459 0.115 1.387 sum -12.672 -12.269 22.273 28.411 Atomic orbital electron populations 1.20050 0.89241 1.02057 1.01675 1.20174 0.97197 0.91892 1.16123 1.23871 0.89903 0.99974 0.99921 1.77432 1.21290 0.88458 1.23579 1.48360 1.05021 1.04836 1.57229 1.21768 0.84547 0.92900 1.00245 1.21399 0.85964 0.96515 0.97436 1.45805 1.21718 1.39541 1.32129 1.18501 0.82862 0.84706 0.80894 1.91023 1.76934 1.34884 1.35342 1.22561 0.98400 1.05659 1.02018 1.22367 0.95958 0.90012 0.90727 1.18356 0.95790 1.06534 0.97768 1.20431 0.93112 0.95217 0.92134 1.20001 0.99076 1.03930 0.99173 1.19273 0.92527 0.90539 0.85252 1.83504 1.44438 1.49470 1.34206 1.20832 0.96303 1.15185 1.13975 0.87443 1.24491 0.99232 0.94319 0.95967 1.69624 1.34832 1.22279 1.24643 0.86181 0.82793 0.79974 0.77987 1.19796 1.20727 1.18319 1.21074 0.97738 1.07094 0.99773 1.20799 0.97186 0.94457 0.93626 1.22338 0.83989 1.00093 1.02780 0.92017 0.91859 0.92243 0.80006 0.89195 0.88117 0.90995 0.90005 0.77050 0.85937 0.85782 0.87990 0.86865 0.90985 0.84982 0.87265 0.81031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.37 36.00 0.37 -0.06 16 2 C -0.24 -2.11 6.10 -105.06 -0.64 -2.75 16 3 C 0.05 0.51 11.96 -17.36 -0.21 0.30 16 4 N -0.29 -3.53 12.42 30.62 0.38 -3.15 16 5 N -0.37 -3.61 3.68 -61.37 -0.23 -3.83 16 6 C 0.13 0.89 6.62 -4.04 -0.03 0.86 16 7 C 0.11 1.17 5.86 -4.04 -0.02 1.15 16 8 N -0.74 -7.09 5.55 -61.76 -0.34 -7.43 16 9 C 0.54 7.48 6.77 -13.04 -0.09 7.40 16 10 O -0.51 -9.67 12.18 5.17 0.06 -9.61 16 11 C -0.27 -3.06 9.90 -37.51 -0.37 -3.43 16 12 C 0.03 0.38 9.80 -37.19 -0.36 0.02 16 13 C -0.18 -3.29 4.54 -105.03 -0.48 -3.76 16 14 C 0.01 0.18 6.59 -39.15 -0.26 -0.07 16 15 C -0.20 -4.44 9.97 -39.47 -0.39 -4.83 16 16 C 0.18 4.37 6.66 -38.88 -0.26 4.12 16 17 O -0.21 -5.86 8.57 0.73 0.01 -5.85 16 18 C -0.39 -11.26 9.94 30.91 0.31 -10.96 16 19 H 0.11 3.18 5.41 -52.49 -0.28 2.89 16 20 C 0.06 1.83 5.49 -17.52 -0.10 1.73 16 21 N -0.88 -25.75 13.96 55.48 0.77 -24.98 16 22 Si 0.91 22.28 28.62 -169.99 -4.86 17.41 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.24 -5.44 9.14 -39.47 -0.36 -5.80 16 27 C -0.04 -0.81 9.78 -39.15 -0.38 -1.20 16 28 C 0.05 0.43 11.36 -17.23 -0.20 0.24 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.39 8.07 -51.93 -0.42 -0.03 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.40 2.23 8.45 -40.82 -0.34 1.88 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 40 H 0.10 1.76 7.02 -52.48 -0.37 1.39 16 41 H 0.11 2.36 8.06 -52.49 -0.42 1.93 16 42 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.13 3.13 5.62 -52.49 -0.29 2.83 16 44 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 45 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 387.26 15.07 5.84 5.84 Total: -1.00 -36.23 387.26 -7.76 -43.99 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.92 Total: 4.67 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -3.47 Total: -17.06 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.59 Total: -39.39 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: 0.07 Total: -15.46 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.86 Total: 17.41 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.23 -7.76 -43.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255388801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.396 kcal (2) G-P(sol) polarization free energy of solvation -36.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds