Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39870 * 126.03770 * 2 1 4 4 N 1.30837 * 108.20282 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20315 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.03512 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47174 * 305.02014 * 6 5 4 8 8 N 1.46501 * 109.47174 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00429 * 180.02562 * 8 7 6 10 10 O 1.21725 * 119.99706 * 0.02562 * 9 8 7 11 11 C 1.46250 * 120.00486 * 180.02562 * 9 8 7 12 12 C 1.35028 * 119.99839 * 173.21151 * 11 9 8 13 13 C 1.46955 * 120.00439 * 348.68502 * 12 11 9 14 14 C 1.40022 * 120.09748 * 316.41019 * 13 12 11 15 15 C 1.37602 * 119.89380 * 179.69541 * 14 13 12 16 16 C 1.39177 * 120.10302 * 0.59663 * 15 14 13 17 17 O 1.35574 * 119.89975 * 179.69679 * 16 15 14 18 18 C 1.34780 * 116.99978 * 174.33883 * 17 16 15 19 19 H 1.08002 * 119.99544 * 5.05906 * 18 17 16 20 20 C 1.38712 * 119.99914 * 185.06308 * 18 17 16 21 21 N 1.31507 * 119.99958 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00032 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47167 * 90.00405 * 22 20 18 24 24 H 1.48503 * 109.47022 * 209.99927 * 22 20 18 25 25 H 1.48496 * 109.47397 * 330.00376 * 22 20 18 26 26 C 1.39178 * 120.20039 * 359.67517 * 16 15 14 27 27 C 1.37594 * 120.10347 * 0.02562 * 26 16 15 28 28 C 1.34948 * 107.92424 * 359.75494 * 5 4 3 29 29 H 1.09000 * 109.47361 * 90.02208 * 1 2 3 30 30 H 1.08999 * 109.47264 * 330.02560 * 1 2 3 31 31 H 1.09002 * 109.47413 * 210.03000 * 1 2 3 32 32 H 1.08001 * 125.90057 * 359.95509 * 3 2 1 33 33 H 1.09000 * 109.47467 * 65.02710 * 6 5 4 34 34 H 1.09007 * 109.46807 * 185.02005 * 6 5 4 35 35 H 1.08996 * 109.47723 * 300.00236 * 7 6 5 36 36 H 1.09001 * 109.46607 * 60.00483 * 7 6 5 37 37 H 0.97002 * 120.00202 * 359.97438 * 8 7 6 38 38 H 1.07992 * 120.00039 * 353.21544 * 11 9 8 39 39 H 1.08004 * 119.99253 * 168.68508 * 12 11 9 40 40 H 1.08005 * 120.05677 * 359.97438 * 14 13 12 41 41 H 1.08002 * 119.94694 * 180.27206 * 15 14 13 42 42 H 0.97005 * 120.00507 * 179.97438 * 21 20 18 43 43 H 1.07995 * 119.94825 * 179.97438 * 26 16 15 44 44 H 1.07999 * 120.05442 * 180.02562 * 27 26 16 45 45 H 1.08004 * 126.12314 * 180.24107 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3298 1.1310 0.0000 4 7 3.5753 0.7303 0.0006 5 7 3.5843 -0.6705 0.0015 6 6 4.7745 -1.5247 0.0029 7 6 5.6723 -1.1504 -1.1780 8 7 6.8628 -2.0042 -1.1763 9 6 7.8018 -1.8532 -2.1312 10 8 7.6609 -1.0071 -2.9949 11 6 8.9900 -2.7059 -2.1298 12 6 9.8620 -2.6504 -3.1593 13 6 9.5031 -1.9292 -4.3883 14 6 8.2258 -2.0782 -4.9423 15 6 7.8920 -1.3961 -6.0898 16 6 8.8259 -0.5687 -6.7066 17 8 8.4947 0.0966 -7.8404 18 6 9.3998 0.9706 -8.3236 19 1 10.3706 1.0553 -7.8579 20 6 9.0844 1.7614 -9.4187 21 7 9.9674 2.6145 -9.8898 22 14 7.4055 1.6144 -10.2244 23 1 6.4627 2.5642 -9.5807 24 1 7.5204 1.9343 -11.6700 25 1 6.8986 0.2280 -10.0630 26 6 10.0985 -0.4220 -6.1627 27 6 10.4392 -1.0954 -5.0122 28 6 2.3031 -1.0941 0.0070 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 0.8902 0.5134 31 1 -0.3634 -0.8897 0.5143 32 1 1.9950 2.1578 -0.0007 33 1 5.3221 -1.3835 0.9347 34 1 4.4728 -2.5684 -0.0865 35 1 5.1248 -1.2917 -2.1099 36 1 5.9740 -0.1068 -1.0885 37 1 6.9757 -2.6777 -0.4874 38 1 9.1699 -3.3800 -1.3055 39 1 10.8234 -3.1361 -3.0793 40 1 7.5021 -2.7240 -4.4672 41 1 6.9056 -1.5070 -6.5153 42 1 9.7470 3.1673 -10.6559 43 1 10.8201 0.2207 -6.6449 44 1 11.4269 -0.9806 -4.5906 45 1 1.9724 -2.1222 0.0128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255388801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = 48.042891 kcal Electronic energy + Delta-G solvation = -27684.645091 eV Core-core repulsion = 23669.816042 eV Total energy + Delta-G solvation = -4014.829048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.15648 -41.18926 -40.50665 -38.40366 -36.70783 -34.67378 -34.32034 -34.06164 -32.50783 -31.88494 -30.63728 -29.48223 -27.44047 -26.90896 -25.14224 -23.83110 -23.56626 -22.35668 -21.86661 -21.16654 -20.50947 -19.72463 -19.16645 -18.29436 -17.71599 -17.08740 -16.72194 -16.53194 -16.28420 -15.85321 -15.73308 -15.63347 -15.26940 -15.23046 -14.78149 -14.67262 -14.33079 -14.29068 -14.17263 -14.06566 -13.87677 -13.74754 -13.69892 -13.14410 -13.01117 -12.75429 -12.71266 -12.58985 -12.51980 -12.31140 -11.98317 -11.45712 -11.36581 -11.07108 -10.79234 -10.47892 -10.44085 -10.15030 -9.63880 -9.26130 -8.63904 -8.54454 -6.25450 -0.06084 0.65119 0.92555 1.06086 1.25817 1.32412 1.44844 1.47279 1.85621 2.24272 2.37977 2.44968 2.77248 3.01636 3.20389 3.46796 3.73803 3.93638 3.97919 4.03539 4.06537 4.09741 4.13936 4.20107 4.45184 4.50359 4.52799 4.56944 4.66646 4.75510 4.80240 4.91223 4.94026 5.00281 5.16258 5.19034 5.25109 5.31698 5.36384 5.38111 5.43134 5.65009 5.73760 5.75172 5.80010 5.87954 6.13763 6.23696 6.64944 6.72779 6.79602 7.39541 7.55228 8.57202 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009378 B = 0.002469 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.063272 B =11336.131072 C =13751.076833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.259 4.259 3 C 0.035 3.965 4 N -0.341 5.341 5 N -0.380 5.380 6 C 0.132 3.868 7 C 0.119 3.881 8 N -0.709 5.709 9 C 0.526 3.474 10 O -0.569 6.569 11 C -0.223 4.223 12 C 0.002 3.998 13 C -0.152 4.152 14 C 0.011 3.989 15 C -0.211 4.211 16 C 0.132 3.868 17 O -0.245 6.245 18 C -0.401 4.401 19 H 0.082 0.918 20 C 0.011 3.989 21 N -0.920 5.920 22 Si 0.970 3.030 23 H -0.269 1.269 24 H -0.260 1.260 25 H -0.265 1.265 26 C -0.253 4.253 27 C -0.053 4.053 28 C 0.058 3.942 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.194 0.806 33 H 0.106 0.894 34 H 0.144 0.856 35 H 0.048 0.952 36 H 0.043 0.957 37 H 0.422 0.578 38 H 0.182 0.818 39 H 0.171 0.829 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.286 0.714 43 H 0.109 0.891 44 H 0.144 0.856 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.746 -17.008 27.249 34.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.270 4.270 3 C -0.151 4.151 4 N -0.163 5.163 5 N -0.163 5.163 6 C 0.011 3.989 7 C -0.006 4.006 8 N -0.364 5.364 9 C 0.317 3.683 10 O -0.449 6.449 11 C -0.243 4.243 12 C -0.018 4.018 13 C -0.153 4.153 14 C -0.008 4.008 15 C -0.231 4.231 16 C 0.082 3.918 17 O -0.152 6.152 18 C -0.478 4.478 19 H 0.100 0.900 20 C -0.188 4.188 21 N -0.560 5.560 22 Si 0.792 3.208 23 H -0.194 1.194 24 H -0.184 1.184 25 H -0.189 1.189 26 C -0.273 4.273 27 C -0.071 4.071 28 C -0.087 4.087 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.210 0.790 33 H 0.124 0.876 34 H 0.162 0.838 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.260 0.740 38 H 0.199 0.801 39 H 0.188 0.812 40 H 0.144 0.856 41 H 0.133 0.867 42 H 0.096 0.904 43 H 0.127 0.873 44 H 0.162 0.838 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -12.651 -15.992 26.365 33.330 hybrid contribution -0.933 0.568 -0.614 1.253 sum -13.583 -15.424 25.750 32.947 Atomic orbital electron populations 1.20076 0.87529 1.03139 1.01912 1.20584 0.98555 0.91617 1.16258 1.24266 0.89948 1.01303 0.99536 1.77354 1.22617 0.90520 1.25771 1.48580 1.06330 1.04189 1.57217 1.21941 0.83592 0.94476 0.98887 1.21197 0.86469 0.94733 0.98232 1.45535 1.20315 1.39094 1.31486 1.19189 0.84092 0.84341 0.80713 1.91029 1.78417 1.37525 1.37935 1.23057 0.95087 1.03439 1.02719 1.22608 0.98664 0.91351 0.89141 1.18960 0.94225 1.03591 0.98485 1.20746 0.94377 0.94812 0.90834 1.20251 0.98834 1.03919 1.00058 1.19759 0.94124 0.92059 0.85840 1.83448 1.44342 1.51032 1.36365 1.20760 0.96020 1.16404 1.14581 0.90044 1.25283 1.02957 0.94025 0.96492 1.69700 1.36693 1.23762 1.25879 0.85244 0.78189 0.79418 0.77987 1.19437 1.18449 1.18923 1.21127 0.96950 1.07775 1.01416 1.21178 0.99349 0.94031 0.92541 1.23006 0.83147 1.01684 1.00895 0.92120 0.91424 0.90576 0.78955 0.87595 0.83809 0.93402 0.93881 0.73966 0.80092 0.81221 0.85561 0.86693 0.90438 0.87295 0.83830 0.77171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.37 71.23 0.74 0.04 16 2 C -0.26 -4.12 6.10 -20.15 -0.12 -4.25 16 3 C 0.04 0.72 11.96 85.24 1.02 1.74 16 4 N -0.34 -8.44 12.42 -57.02 -0.71 -9.14 16 5 N -0.38 -6.67 3.68 -348.06 -1.28 -7.95 16 6 C 0.13 1.39 6.62 86.38 0.57 1.97 16 7 C 0.12 2.30 5.86 86.38 0.51 2.81 16 8 N -0.71 -10.73 5.55 -467.51 -2.60 -13.32 16 9 C 0.53 12.58 6.77 86.33 0.58 13.16 16 10 O -0.57 -21.04 12.18 -4.43 -0.05 -21.09 16 11 C -0.22 -3.68 9.90 23.61 0.23 -3.45 16 12 C 0.00 0.03 9.80 23.82 0.23 0.27 16 13 C -0.15 -5.08 4.54 -20.13 -0.09 -5.17 16 14 C 0.01 0.39 6.59 22.55 0.15 0.54 16 15 C -0.21 -9.58 9.97 22.35 0.22 -9.36 16 16 C 0.13 6.92 6.66 22.72 0.15 7.07 16 17 O -0.24 -14.54 8.57 -20.29 -0.17 -14.71 16 18 C -0.40 -25.26 9.94 67.93 0.68 -24.58 16 19 H 0.08 5.34 5.41 -2.91 -0.02 5.32 16 20 C 0.01 0.68 5.49 84.85 0.47 1.14 16 21 N -0.92 -57.14 13.96 21.62 0.30 -56.84 16 22 Si 0.97 48.19 28.62 68.60 1.96 50.16 16 23 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 24 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.26 -13.22 7.11 99.48 0.71 -12.52 16 26 C -0.25 -12.32 9.14 22.34 0.20 -12.11 16 27 C -0.05 -2.02 9.78 22.55 0.22 -1.80 16 28 C 0.06 0.78 11.36 83.54 0.95 1.73 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.19 3.05 8.06 -2.91 -0.02 3.02 16 33 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.14 0.29 8.07 -2.38 -0.02 0.27 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.42 2.14 8.45 -92.71 -0.78 1.35 16 38 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.13 4.03 7.02 -2.91 -0.02 4.01 16 41 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 42 H 0.29 16.21 8.31 -92.70 -0.77 15.44 16 43 H 0.11 5.70 5.62 -2.91 -0.02 5.69 16 44 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 45 H 0.21 0.94 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -90.23 387.26 4.40 -85.83 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.24 Total: 17.34 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 6.71 Total: -30.25 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -4.28 Total: -87.26 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.23 Total: -35.81 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 1.96 Total: 50.16 kcal Total: -90.23 4.40 -85.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255388801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.872 kcal (2) G-P(sol) polarization free energy of solvation -90.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds