Wall clock time and date at job start Sat Apr 11 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47232 * 2 1 4 4 C 1.50709 * 109.46672 * 119.99549 * 2 1 3 5 5 N 1.32156 * 120.53504 * 268.18859 * 4 2 1 6 6 C 1.31858 * 120.96624 * 180.02562 * 5 4 2 7 7 N 1.31888 * 122.09749 * 0.02562 * 6 5 4 8 8 C 1.32132 * 120.96130 * 359.97438 * 7 6 5 9 9 C 1.39930 * 120.53500 * 88.21758 * 4 2 1 10 10 C 1.47827 * 120.94346 * 359.97438 * 9 4 2 11 11 O 1.21554 * 119.99769 * 354.18890 * 10 9 4 12 12 N 1.34777 * 120.00403 * 174.19396 * 10 9 4 13 13 C 1.46494 * 120.00210 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.47024 * 179.97438 * 13 12 10 15 15 C 1.38298 * 119.93159 * 269.72900 * 14 13 12 16 16 C 1.38098 * 120.06494 * 179.72594 * 15 14 13 17 17 C 1.38874 * 119.93514 * 0.57230 * 16 15 14 18 18 O 1.35753 * 120.07401 * 179.68294 * 17 16 15 19 19 C 1.34825 * 117.00005 * 185.57748 * 18 17 16 20 20 H 1.08003 * 120.00303 * 354.88007 * 19 18 17 21 21 C 1.38661 * 119.99671 * 174.87634 * 19 18 17 22 22 N 1.31553 * 119.99949 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99572 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47216 * 90.00543 * 23 21 19 25 25 H 1.48503 * 109.46918 * 210.00231 * 23 21 19 26 26 H 1.48502 * 109.47711 * 329.99929 * 23 21 19 27 27 C 1.38886 * 119.86042 * 359.70035 * 17 16 15 28 28 C 1.38098 * 119.92760 * 0.02562 * 27 17 16 29 29 H 1.08996 * 109.47433 * 300.00149 * 1 2 3 30 30 H 1.09007 * 109.46739 * 60.00678 * 1 2 3 31 31 H 1.09010 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47503 * 239.99367 * 2 1 3 33 33 H 1.09007 * 109.46705 * 299.99342 * 3 2 1 34 34 H 1.09000 * 109.47394 * 59.99300 * 3 2 1 35 35 H 1.08995 * 109.47245 * 179.97438 * 3 2 1 36 36 H 1.08001 * 118.95409 * 180.27996 * 6 5 4 37 37 H 1.07998 * 120.53707 * 180.02562 * 8 7 6 38 38 H 0.97002 * 119.99293 * 359.97438 * 12 10 9 39 39 H 1.08993 * 109.47624 * 300.00061 * 13 12 10 40 40 H 1.09000 * 109.46967 * 60.00001 * 13 12 10 41 41 H 1.07997 * 119.96873 * 359.97438 * 15 14 13 42 42 H 1.08011 * 120.03465 * 180.27376 * 16 15 14 43 43 H 0.97001 * 119.99858 * 180.02562 * 22 21 19 44 44 H 1.07996 * 120.03509 * 179.97438 * 27 17 16 45 45 H 1.08005 * 119.96487 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 7 2.2899 -0.0355 2.3373 6 6 2.7301 -0.6483 3.4187 7 7 2.9343 -1.9509 3.4520 8 6 2.7026 -2.7026 2.3903 9 6 2.2338 -2.0950 1.2197 10 6 1.9600 -2.8935 0.0061 11 8 1.4547 -2.3674 -0.9662 12 7 2.2704 -4.2047 -0.0222 13 6 1.9984 -4.9961 -1.2246 14 6 2.4359 -6.4203 -0.9982 15 6 3.7238 -6.8064 -1.3221 16 6 4.1293 -8.1094 -1.1105 17 6 3.2389 -9.0354 -0.5830 18 8 3.6326 -10.3186 -0.3798 19 6 2.6884 -11.1917 0.0251 20 1 1.6921 -10.8426 0.2530 21 6 2.9966 -12.5380 0.1489 22 7 4.2103 -12.9631 -0.1283 23 14 1.6882 -13.7478 0.7092 24 1 0.9643 -14.2773 -0.4743 25 1 2.3316 -14.8699 1.4387 26 1 0.7288 -13.0581 1.6087 27 6 1.9444 -8.6459 -0.2640 28 6 1.5467 -7.3400 -0.4727 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9562 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4425 0.0005 36 1 2.9259 -0.0656 4.3067 37 1 2.8717 -3.7687 2.4253 38 1 2.6738 -4.6244 0.7538 39 1 0.9303 -4.9737 -1.4405 40 1 2.5483 -4.5771 -2.0673 41 1 4.4143 -6.0872 -1.7372 42 1 5.1367 -8.4093 -1.3595 43 1 4.4257 -13.9050 -0.0421 44 1 1.2495 -9.3637 0.1460 45 1 0.5401 -7.0366 -0.2252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263933862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:38 Heat of formation + Delta-G solvation = -13.116089 kcal Electronic energy + Delta-G solvation = -28050.318049 eV Core-core repulsion = 24032.836948 eV Total energy + Delta-G solvation = -4017.481101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.48054 -40.92693 -40.29772 -38.52045 -37.17890 -35.61894 -34.34726 -34.13336 -32.90308 -31.82719 -31.16926 -28.06901 -27.79080 -26.83382 -25.99768 -25.28402 -23.64188 -22.25128 -22.15664 -21.66779 -19.88278 -19.14245 -18.91222 -18.65620 -17.83443 -16.77873 -16.68608 -16.37531 -16.35609 -15.96721 -15.65642 -15.55564 -15.47584 -15.29210 -14.98586 -14.94232 -14.50487 -14.34576 -14.19416 -13.91494 -13.66166 -13.30593 -13.03929 -13.02468 -12.76400 -12.56303 -12.45598 -12.36177 -12.26793 -12.22549 -12.11313 -12.00434 -11.62746 -11.19991 -10.85417 -10.77787 -10.67210 -10.35425 -10.06664 -9.80253 -9.01075 -8.48474 -6.16480 -0.65267 -0.09301 0.53658 0.58658 1.35964 1.44018 1.52696 1.74626 2.10149 2.16911 2.68745 2.83705 2.91527 3.04252 3.16294 3.22077 3.49813 3.61065 3.73355 3.89573 4.04281 4.14230 4.17426 4.18436 4.22989 4.41590 4.47260 4.57391 4.67292 4.77266 4.81603 4.82931 4.96145 4.97838 5.05057 5.11472 5.14643 5.19316 5.27351 5.29570 5.39452 5.48995 5.53265 5.70011 5.75116 5.80893 6.01609 6.16791 6.43024 6.91934 6.96560 7.07782 7.76054 8.74258 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020564 B = 0.001997 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.306899 B =14018.672818 C =14468.834812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.062 4.062 3 C -0.132 4.132 4 C 0.233 3.767 5 N -0.529 5.529 6 C 0.315 3.685 7 N -0.540 5.540 8 C 0.189 3.811 9 C -0.255 4.255 10 C 0.568 3.432 11 O -0.547 6.547 12 N -0.707 5.707 13 C 0.187 3.813 14 C -0.184 4.184 15 C -0.042 4.042 16 C -0.206 4.206 17 C 0.122 3.878 18 O -0.229 6.229 19 C -0.412 4.412 20 H 0.104 0.896 21 C -0.022 4.022 22 N -0.918 5.918 23 Si 1.017 2.983 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.252 1.252 27 C -0.244 4.244 28 C -0.044 4.044 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.232 0.768 37 H 0.192 0.808 38 H 0.409 0.591 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.148 0.852 42 H 0.114 0.886 43 H 0.273 0.727 44 H 0.119 0.881 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.197 25.357 3.495 26.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.081 4.081 3 C -0.189 4.189 4 C 0.086 3.914 5 N -0.243 5.243 6 C 0.030 3.970 7 N -0.254 5.254 8 C 0.022 3.978 9 C -0.262 4.262 10 C 0.355 3.645 11 O -0.426 6.426 12 N -0.359 5.359 13 C 0.064 3.936 14 C -0.185 4.185 15 C -0.061 4.061 16 C -0.225 4.225 17 C 0.071 3.929 18 O -0.135 6.135 19 C -0.488 4.488 20 H 0.121 0.879 21 C -0.220 4.220 22 N -0.556 5.556 23 Si 0.836 3.164 24 H -0.189 1.189 25 H -0.198 1.198 26 H -0.175 1.175 27 C -0.264 4.264 28 C -0.062 4.062 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.248 0.752 37 H 0.209 0.791 38 H 0.245 0.755 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.166 0.834 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.029 25.960 3.601 26.893 hybrid contribution -0.059 -1.939 -0.028 1.940 sum -6.088 24.021 3.573 25.036 Atomic orbital electron populations 1.21576 0.92381 1.01585 1.02453 1.20595 0.97408 0.96788 0.93261 1.21696 1.00411 0.94039 1.02787 1.22195 0.85711 0.89298 0.94217 1.68434 1.14848 1.40895 1.00097 1.25936 0.86463 0.88271 0.96375 1.68555 1.18621 1.08240 1.29986 1.23869 0.86080 1.01622 0.86210 1.21601 1.10274 0.96744 0.97596 1.17828 0.78282 0.81977 0.86446 1.90715 1.44535 1.70589 1.36801 1.46066 1.62934 1.08347 1.18529 1.19957 1.01248 0.85505 0.86853 1.19488 0.94730 0.95346 1.08934 1.20894 0.95662 0.93636 0.95889 1.20454 0.99752 0.93865 1.08424 1.20020 0.94100 0.85564 0.93183 1.83948 1.38077 1.15417 1.76098 1.21823 0.93068 0.87967 1.45977 0.87858 1.26576 1.00042 0.98542 0.96872 1.70176 1.21269 1.16666 1.47516 0.84603 0.76403 0.76589 0.78762 1.18940 1.19762 1.17524 1.21251 0.96347 0.98492 1.10275 1.20958 0.99520 0.91038 0.94729 0.92806 0.90469 0.93642 0.87255 0.91032 0.91705 0.93478 0.75192 0.79113 0.75460 0.90388 0.90185 0.83411 0.86834 0.91829 0.86284 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 8.88 71.98 0.64 -1.48 16 2 C -0.06 -1.14 2.39 -11.54 -0.03 -1.17 16 3 C -0.13 -2.02 8.74 71.98 0.63 -1.39 16 4 C 0.23 4.59 5.82 42.92 0.25 4.84 16 5 N -0.53 -9.72 9.34 -187.05 -1.75 -11.47 16 6 C 0.32 4.90 12.27 180.84 2.22 7.12 16 7 N -0.54 -9.60 10.42 -198.97 -2.07 -11.67 16 8 C 0.19 3.15 10.80 85.07 0.92 4.07 16 9 C -0.25 -4.86 5.91 -19.91 -0.12 -4.97 16 10 C 0.57 11.73 7.73 86.78 0.67 12.40 16 11 O -0.55 -13.63 12.43 -3.89 -0.05 -13.68 16 12 N -0.71 -12.85 5.50 -469.74 -2.59 -15.44 16 13 C 0.19 3.80 5.80 85.64 0.50 4.30 16 14 C -0.18 -4.74 5.25 -19.83 -0.10 -4.84 16 15 C -0.04 -1.21 9.69 22.25 0.22 -1.00 16 16 C -0.21 -7.91 9.99 22.39 0.22 -7.69 16 17 C 0.12 5.64 6.65 22.58 0.15 5.79 16 18 O -0.23 -13.18 9.76 -22.73 -0.22 -13.40 16 19 C -0.41 -23.04 9.49 67.92 0.64 -22.39 16 20 H 0.10 5.25 5.20 -2.91 -0.02 5.23 16 21 C -0.02 -1.24 5.49 84.84 0.47 -0.77 16 22 N -0.92 -54.98 13.67 21.61 0.30 -54.69 16 23 Si 1.02 41.50 29.55 68.60 2.03 43.53 16 24 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 25 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 27 C -0.24 -9.61 9.17 22.39 0.21 -9.41 16 28 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.04 0.92 7.35 -2.38 -0.02 0.91 16 32 H 0.11 2.36 5.62 -2.39 -0.01 2.34 16 33 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.06 1.00 7.80 -2.39 -0.02 0.99 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.23 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.19 2.22 6.58 -2.91 -0.02 2.20 16 38 H 0.41 6.24 6.63 -92.71 -0.62 5.63 16 39 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 40 H 0.08 1.59 8.08 -2.39 -0.02 1.57 16 41 H 0.15 3.26 8.06 -2.91 -0.02 3.23 16 42 H 0.11 4.39 8.06 -2.90 -0.02 4.37 16 43 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.12 4.84 5.64 -2.91 -0.02 4.82 16 45 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -70.98 379.86 3.76 -67.22 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.42 Total: 27.28 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 7.69 Total: -17.68 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -6.11 Total: -93.27 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.27 Total: -27.07 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -70.98 3.76 -67.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263933862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.100 kcal (2) G-P(sol) polarization free energy of solvation -70.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds