Wall clock time and date at job start Sat Apr 11 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47272 * 2 1 4 4 N 1.31927 * 120.17132 * 263.17031 * 3 2 1 5 5 N 1.28280 * 122.31957 * 179.97438 * 4 3 2 6 6 C 1.31913 * 122.51928 * 0.02562 * 5 4 3 7 7 C 1.50709 * 120.01140 * 179.97438 * 6 5 4 8 8 C 1.38497 * 119.96835 * 359.71653 * 6 5 4 9 9 C 1.39726 * 120.17237 * 83.15145 * 3 2 1 10 10 C 1.48135 * 121.14192 * 0.02562 * 9 3 2 11 11 O 1.21510 * 120.00511 * 4.51681 * 10 9 3 12 12 N 1.34778 * 119.99800 * 184.51419 * 10 9 3 13 13 C 1.46502 * 120.00194 * 179.73018 * 12 10 9 14 14 C 1.50689 * 109.47457 * 180.27543 * 13 12 10 15 15 C 1.38307 * 119.93263 * 269.72633 * 14 13 12 16 16 C 1.38099 * 120.06764 * 179.72360 * 15 14 13 17 17 C 1.38873 * 119.93319 * 0.56688 * 16 15 14 18 18 O 1.35747 * 120.07334 * 179.67833 * 17 16 15 19 19 C 1.34826 * 117.00441 * 174.60492 * 18 17 16 20 20 H 1.07999 * 120.00225 * 5.07545 * 19 18 17 21 21 C 1.38658 * 119.99963 * 185.07799 * 19 18 17 22 22 N 1.31556 * 119.99713 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00256 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47605 * 89.99826 * 23 21 19 25 25 H 1.48500 * 109.47385 * 209.99934 * 23 21 19 26 26 H 1.48506 * 109.46840 * 329.99810 * 23 21 19 27 27 C 1.38879 * 119.86217 * 359.70857 * 17 16 15 28 28 C 1.38102 * 119.93127 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.47370 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46979 * 299.99945 * 1 2 3 31 31 H 1.09000 * 109.47373 * 59.99770 * 1 2 3 32 32 H 1.09003 * 109.46979 * 240.00055 * 2 1 3 33 33 H 1.08994 * 109.46943 * 120.00138 * 2 1 3 34 34 H 1.09000 * 109.46902 * 90.00139 * 7 6 5 35 35 H 1.08995 * 109.46662 * 209.99931 * 7 6 5 36 36 H 1.08995 * 109.46979 * 329.99919 * 7 6 5 37 37 H 1.08004 * 121.08408 * 180.30372 * 8 6 5 38 38 H 0.97002 * 120.00359 * 0.02562 * 12 10 9 39 39 H 1.09002 * 109.46796 * 300.27526 * 13 12 10 40 40 H 1.08998 * 109.47058 * 60.26813 * 13 12 10 41 41 H 1.08002 * 119.96051 * 359.97438 * 15 14 13 42 42 H 1.07996 * 120.03050 * 180.27074 * 16 15 14 43 43 H 0.97001 * 119.99731 * 180.02562 * 22 21 19 44 44 H 1.07999 * 120.03691 * 179.97438 * 27 17 16 45 45 H 1.08003 * 119.96794 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3813 2.0007 -1.1325 5 7 2.8136 3.2075 -1.1803 6 6 2.9420 3.9580 -0.1030 7 6 3.4565 5.3693 -0.2245 8 6 2.5988 3.4500 1.1389 9 6 2.1307 2.1309 1.1993 10 6 1.7481 1.5120 2.4897 11 8 1.4188 0.3430 2.5289 12 7 1.7653 2.2455 3.6202 13 6 1.3812 1.6351 4.8954 14 6 1.4790 2.6622 5.9937 15 6 2.6624 2.8140 6.6933 16 6 2.7568 3.7584 7.6965 17 6 1.6585 4.5480 8.0106 18 8 1.7462 5.4726 9.0005 19 6 0.6819 6.2809 9.1794 20 1 -0.2189 6.1227 8.6050 21 6 0.7440 7.3152 10.1008 22 7 -0.2943 8.1041 10.2749 23 14 2.3022 7.5893 11.0938 24 1 3.1986 8.5196 10.3616 25 1 1.9521 8.1747 12.4128 26 1 2.9947 6.2913 11.2964 27 6 0.4698 4.3893 7.3101 28 6 0.3836 3.4477 6.3035 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.6185 6.0497 -0.3760 35 1 3.9861 5.6427 0.6881 36 1 4.1369 5.4362 -1.0734 37 1 2.6922 4.0502 2.0320 38 1 2.0278 3.1788 3.5889 39 1 0.3562 1.2702 4.8294 40 1 2.0496 0.8028 5.1157 41 1 3.5147 2.1961 6.4520 42 1 3.6825 3.8794 8.2394 43 1 -0.2508 8.8279 10.9192 44 1 -0.3863 5.0015 7.5523 45 1 -0.5404 3.3240 5.7582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273548092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:58 Heat of formation + Delta-G solvation = 13.997232 kcal Electronic energy + Delta-G solvation = -28076.108590 eV Core-core repulsion = 24059.803211 eV Total energy + Delta-G solvation = -4016.305379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72814 -39.84464 -39.26385 -37.21653 -35.62205 -34.60014 -33.98201 -32.58382 -31.97334 -30.50507 -30.11660 -28.33717 -26.50001 -25.56987 -24.95320 -23.99488 -22.31171 -22.15436 -20.97407 -20.74874 -18.22138 -18.08103 -18.00309 -17.38810 -16.33164 -15.94759 -15.83530 -15.35572 -15.16021 -14.84311 -14.49274 -14.33168 -14.19941 -14.07684 -13.99065 -13.65672 -13.50680 -13.37642 -13.02797 -12.84008 -12.75279 -12.57892 -12.36310 -12.16605 -12.03050 -11.63258 -11.33463 -11.10704 -11.05210 -10.93801 -10.87151 -10.58384 -10.57542 -10.30263 -9.85486 -9.67470 -9.58005 -9.26310 -9.03461 -8.49747 -7.59779 -6.58093 -4.25351 -0.02714 0.48758 1.79487 1.91519 2.46370 2.90671 3.11265 3.14941 3.23815 3.28477 3.55707 3.88656 3.99265 4.09406 4.20749 4.31396 4.41778 4.64453 4.67463 4.87900 4.93589 4.98214 5.01143 5.14958 5.18213 5.19928 5.22624 5.30701 5.43372 5.55660 5.58989 5.60014 5.67855 5.77923 5.82262 5.92351 6.03482 6.04821 6.12816 6.25837 6.34618 6.56304 6.77770 7.00185 7.07229 7.20823 7.39254 7.61420 7.84171 7.85371 8.33922 8.76062 9.35765 10.48827 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015860 B = 0.002211 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.995342 B =12662.987016 C =13612.246079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 C 0.120 3.880 4 N -0.241 5.241 5 N -0.226 5.226 6 C 0.059 3.941 7 C -0.102 4.102 8 C -0.082 4.082 9 C -0.127 4.127 10 C 0.558 3.442 11 O -0.519 6.519 12 N -0.710 5.710 13 C 0.178 3.822 14 C -0.212 4.212 15 C -0.055 4.055 16 C -0.195 4.195 17 C 0.168 3.832 18 O -0.210 6.210 19 C -0.393 4.393 20 H 0.108 0.892 21 C 0.065 3.935 22 N -0.873 5.873 23 Si 0.906 3.094 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.224 4.224 28 C -0.051 4.051 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.156 0.844 38 H 0.401 0.599 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.282 0.718 44 H 0.135 0.865 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.628 -9.544 -16.915 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.121 4.121 3 C -0.025 4.025 4 N -0.082 5.082 5 N -0.069 5.069 6 C -0.085 4.085 7 C -0.160 4.160 8 C -0.112 4.112 9 C -0.141 4.141 10 C 0.343 3.657 11 O -0.396 6.396 12 N -0.362 5.362 13 C 0.057 3.943 14 C -0.214 4.214 15 C -0.074 4.074 16 C -0.215 4.215 17 C 0.114 3.886 18 O -0.114 6.114 19 C -0.468 4.468 20 H 0.125 0.875 21 C -0.139 4.139 22 N -0.510 5.510 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.206 1.206 26 H -0.183 1.183 27 C -0.243 4.243 28 C -0.070 4.070 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.173 0.827 38 H 0.237 0.763 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.092 0.908 44 H 0.153 0.847 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.621 -10.255 -18.195 21.629 hybrid contribution 0.369 1.088 2.085 2.380 sum 5.990 -9.167 -16.110 19.479 Atomic orbital electron populations 1.21583 0.93503 1.02503 1.01616 1.20813 0.97156 0.88788 1.05298 1.23154 0.92190 0.98629 0.88523 1.73073 1.07997 1.03273 1.23853 1.72835 1.07700 0.99428 1.26948 1.22886 0.96631 0.99007 0.89992 1.20725 1.02118 0.88813 1.04365 1.22597 0.94316 0.94357 0.99902 1.21152 1.01868 0.95120 0.95980 1.17900 0.78463 0.86281 0.83044 1.90719 1.47435 1.15538 1.85923 1.46298 1.67643 1.14898 1.07355 1.20086 1.00771 0.93988 0.79478 1.19230 0.95798 1.03781 1.02562 1.20538 0.96261 0.96191 0.94392 1.20215 0.97916 1.00666 1.02660 1.19191 0.93153 0.89152 0.87071 1.83574 1.41914 1.41190 1.44745 1.20791 0.92321 1.09126 1.24593 0.87452 1.24499 0.98487 0.94193 0.96724 1.69639 1.29554 1.17163 1.34604 0.86172 0.82094 0.79574 0.79042 1.19758 1.20606 1.18295 1.21285 0.99224 1.03349 1.00492 1.20705 0.96949 0.93668 0.95637 0.91527 0.92373 0.93132 0.90194 0.86524 0.89500 0.89856 0.89688 0.82683 0.76315 0.90922 0.90924 0.86736 0.86305 0.90803 0.84737 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.57 37.16 0.36 -0.95 16 2 C -0.08 -0.85 5.48 -27.88 -0.15 -1.00 16 3 C 0.12 1.39 6.16 -82.00 -0.51 0.88 16 4 N -0.24 -3.08 11.42 33.81 0.39 -2.69 16 5 N -0.23 -2.73 11.41 33.57 0.38 -2.35 16 6 C 0.06 0.55 6.86 -82.46 -0.57 -0.01 16 7 C -0.10 -0.61 10.19 36.01 0.37 -0.25 16 8 C -0.08 -0.71 9.35 -38.79 -0.36 -1.08 16 9 C -0.13 -1.35 5.92 -104.58 -0.62 -1.97 16 10 C 0.56 6.28 7.64 -12.20 -0.09 6.19 16 11 O -0.52 -6.86 12.35 5.36 0.07 -6.79 16 12 N -0.71 -7.27 5.51 -62.34 -0.34 -7.61 16 13 C 0.18 2.04 5.80 -5.20 -0.03 2.01 16 14 C -0.21 -2.89 5.25 -104.58 -0.55 -3.44 16 15 C -0.05 -0.78 9.69 -39.61 -0.38 -1.17 16 16 C -0.20 -3.38 9.99 -39.40 -0.39 -3.77 16 17 C 0.17 3.48 6.65 -39.11 -0.26 3.22 16 18 O -0.21 -5.13 8.59 0.07 0.00 -5.13 16 19 C -0.39 -10.37 9.95 30.89 0.31 -10.06 16 20 H 0.11 2.89 5.44 -52.49 -0.29 2.60 16 21 C 0.07 1.74 5.49 -17.51 -0.10 1.64 16 22 N -0.87 -23.99 13.96 55.48 0.77 -23.22 16 23 Si 0.91 20.45 28.62 -169.99 -4.86 15.59 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 26 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 27 C -0.22 -4.29 9.17 -39.39 -0.36 -4.65 16 28 C -0.05 -0.78 9.69 -39.61 -0.38 -1.17 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.64 7.17 -51.93 -0.37 0.26 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.12 1.30 5.67 -51.93 -0.29 1.00 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.16 0.91 6.63 -52.48 -0.35 0.56 16 38 H 0.40 3.51 6.67 -40.82 -0.27 3.24 16 39 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 40 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.14 2.76 5.64 -52.49 -0.30 2.46 16 45 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -29.82 380.69 -7.23 -37.05 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.64 Total: 4.98 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -3.73 Total: -15.56 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 1.20 Total: -35.87 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.86 Total: 15.59 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.82 -7.23 -37.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273548092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.050 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds