Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47272 * 2 1 4 4 N 1.31927 * 120.17132 * 263.17031 * 3 2 1 5 5 N 1.28280 * 122.31957 * 179.97438 * 4 3 2 6 6 C 1.31913 * 122.51928 * 0.02562 * 5 4 3 7 7 C 1.50709 * 120.01140 * 179.97438 * 6 5 4 8 8 C 1.38497 * 119.96835 * 359.71653 * 6 5 4 9 9 C 1.39726 * 120.17237 * 83.15145 * 3 2 1 10 10 C 1.48135 * 121.14192 * 0.02562 * 9 3 2 11 11 O 1.21510 * 120.00511 * 4.51681 * 10 9 3 12 12 N 1.34778 * 119.99800 * 184.51419 * 10 9 3 13 13 C 1.46502 * 120.00194 * 179.73018 * 12 10 9 14 14 C 1.50689 * 109.47457 * 180.27543 * 13 12 10 15 15 C 1.38307 * 119.93263 * 269.72633 * 14 13 12 16 16 C 1.38099 * 120.06764 * 179.72360 * 15 14 13 17 17 C 1.38873 * 119.93319 * 0.56688 * 16 15 14 18 18 O 1.35747 * 120.07334 * 179.67833 * 17 16 15 19 19 C 1.34826 * 117.00441 * 174.60492 * 18 17 16 20 20 H 1.07999 * 120.00225 * 5.07545 * 19 18 17 21 21 C 1.38658 * 119.99963 * 185.07799 * 19 18 17 22 22 N 1.31556 * 119.99713 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00256 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47605 * 89.99826 * 23 21 19 25 25 H 1.48500 * 109.47385 * 209.99934 * 23 21 19 26 26 H 1.48506 * 109.46840 * 329.99810 * 23 21 19 27 27 C 1.38879 * 119.86217 * 359.70857 * 17 16 15 28 28 C 1.38102 * 119.93127 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.47370 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46979 * 299.99945 * 1 2 3 31 31 H 1.09000 * 109.47373 * 59.99770 * 1 2 3 32 32 H 1.09003 * 109.46979 * 240.00055 * 2 1 3 33 33 H 1.08994 * 109.46943 * 120.00138 * 2 1 3 34 34 H 1.09000 * 109.46902 * 90.00139 * 7 6 5 35 35 H 1.08995 * 109.46662 * 209.99931 * 7 6 5 36 36 H 1.08995 * 109.46979 * 329.99919 * 7 6 5 37 37 H 1.08004 * 121.08408 * 180.30372 * 8 6 5 38 38 H 0.97002 * 120.00359 * 0.02562 * 12 10 9 39 39 H 1.09002 * 109.46796 * 300.27526 * 13 12 10 40 40 H 1.08998 * 109.47058 * 60.26813 * 13 12 10 41 41 H 1.08002 * 119.96051 * 359.97438 * 15 14 13 42 42 H 1.07996 * 120.03050 * 180.27074 * 16 15 14 43 43 H 0.97001 * 119.99731 * 180.02562 * 22 21 19 44 44 H 1.07999 * 120.03691 * 179.97438 * 27 17 16 45 45 H 1.08003 * 119.96794 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3813 2.0007 -1.1325 5 7 2.8136 3.2075 -1.1803 6 6 2.9420 3.9580 -0.1030 7 6 3.4565 5.3693 -0.2245 8 6 2.5988 3.4500 1.1389 9 6 2.1307 2.1309 1.1993 10 6 1.7481 1.5120 2.4897 11 8 1.4188 0.3430 2.5289 12 7 1.7653 2.2455 3.6202 13 6 1.3812 1.6351 4.8954 14 6 1.4790 2.6622 5.9937 15 6 2.6624 2.8140 6.6933 16 6 2.7568 3.7584 7.6965 17 6 1.6585 4.5480 8.0106 18 8 1.7462 5.4726 9.0005 19 6 0.6819 6.2809 9.1794 20 1 -0.2189 6.1227 8.6050 21 6 0.7440 7.3152 10.1008 22 7 -0.2943 8.1041 10.2749 23 14 2.3022 7.5893 11.0938 24 1 3.1986 8.5196 10.3616 25 1 1.9521 8.1747 12.4128 26 1 2.9947 6.2913 11.2964 27 6 0.4698 4.3893 7.3101 28 6 0.3836 3.4477 6.3035 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.6185 6.0497 -0.3760 35 1 3.9861 5.6427 0.6881 36 1 4.1369 5.4362 -1.0734 37 1 2.6922 4.0502 2.0320 38 1 2.0278 3.1788 3.5889 39 1 0.3562 1.2702 4.8294 40 1 2.0496 0.8028 5.1157 41 1 3.5147 2.1961 6.4520 42 1 3.6825 3.8794 8.2394 43 1 -0.2508 8.8279 10.9192 44 1 -0.3863 5.0015 7.5523 45 1 -0.5404 3.3240 5.7582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273548092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = -4.432887 kcal Electronic energy + Delta-G solvation = -28076.907780 eV Core-core repulsion = 24059.803211 eV Total energy + Delta-G solvation = -4017.104569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.53077 -41.04808 -40.47604 -38.64049 -36.48924 -35.54011 -34.80496 -34.43212 -32.79536 -31.86653 -31.33064 -29.03156 -27.87495 -26.69543 -26.06250 -24.90812 -23.71737 -22.97857 -22.08122 -21.84191 -19.85956 -19.23691 -18.89058 -18.79578 -17.11975 -16.87636 -16.76841 -16.56749 -16.36474 -15.96890 -15.75363 -15.63607 -15.51409 -15.15208 -14.92308 -14.81218 -14.46215 -14.29259 -14.21500 -14.08331 -14.03718 -13.41791 -13.28755 -13.21970 -13.11033 -12.79090 -12.60876 -12.47391 -12.34279 -12.15227 -11.93902 -11.86455 -11.41834 -11.37146 -11.30204 -10.92373 -10.63093 -10.50876 -10.15832 -9.83306 -9.10392 -8.51065 -6.24049 -0.81741 -0.25976 0.46865 0.55126 1.33163 1.35679 1.52343 1.61203 1.96768 2.27280 2.43582 2.76622 2.82317 3.04237 3.12304 3.17276 3.26551 3.56315 3.63927 3.85919 3.98104 4.01605 4.14326 4.21082 4.25430 4.39982 4.43835 4.51806 4.54312 4.67259 4.72516 4.74622 4.81405 4.90661 4.96078 4.96623 5.03505 5.17413 5.22393 5.26003 5.27423 5.33739 5.41848 5.53931 5.70324 5.79027 5.88421 6.18946 6.35545 6.83321 6.99099 7.54263 7.56451 8.60125 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015860 B = 0.002211 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.995342 B =12662.987016 C =13612.246079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C 0.109 3.891 4 N -0.268 5.268 5 N -0.255 5.255 6 C 0.059 3.941 7 C -0.102 4.102 8 C -0.069 4.069 9 C -0.137 4.137 10 C 0.564 3.436 11 O -0.539 6.539 12 N -0.702 5.702 13 C 0.183 3.817 14 C -0.176 4.176 15 C -0.043 4.043 16 C -0.192 4.192 17 C 0.130 3.870 18 O -0.242 6.242 19 C -0.399 4.399 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.922 5.922 23 Si 0.969 3.031 24 H -0.264 1.264 25 H -0.271 1.271 26 H -0.261 1.261 27 C -0.239 4.239 28 C -0.048 4.048 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.188 0.812 38 H 0.411 0.589 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.156 0.844 42 H 0.130 0.870 43 H 0.285 0.715 44 H 0.108 0.892 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.642 -10.910 -17.952 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.118 4.118 3 C -0.037 4.037 4 N -0.108 5.108 5 N -0.097 5.097 6 C -0.086 4.086 7 C -0.160 4.160 8 C -0.099 4.099 9 C -0.151 4.151 10 C 0.350 3.650 11 O -0.417 6.417 12 N -0.354 5.354 13 C 0.061 3.939 14 C -0.177 4.177 15 C -0.061 4.061 16 C -0.211 4.211 17 C 0.080 3.920 18 O -0.149 6.149 19 C -0.475 4.475 20 H 0.101 0.899 21 C -0.188 4.188 22 N -0.562 5.562 23 Si 0.792 3.208 24 H -0.189 1.189 25 H -0.196 1.196 26 H -0.186 1.186 27 C -0.258 4.258 28 C -0.067 4.067 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.205 0.795 38 H 0.248 0.752 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.173 0.827 42 H 0.148 0.852 43 H 0.094 0.906 44 H 0.126 0.874 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.649 -11.652 -19.286 23.796 hybrid contribution -0.239 1.230 2.090 2.437 sum 7.409 -10.422 -17.196 21.430 Atomic orbital electron populations 1.21536 0.93176 1.03097 1.00842 1.20790 0.97370 0.88446 1.05179 1.23317 0.92425 0.99126 0.88808 1.73013 1.09165 1.03987 1.24678 1.72760 1.08763 0.99634 1.28571 1.23422 0.95610 0.99997 0.89613 1.20873 1.02625 0.86819 1.05638 1.22958 0.92400 0.93669 1.00841 1.21126 1.02717 0.95980 0.95288 1.17880 0.77985 0.85941 0.83225 1.90722 1.48321 1.16490 1.86174 1.46051 1.67454 1.15300 1.06613 1.20029 1.01646 0.93288 0.78920 1.19508 0.94604 1.01956 1.01649 1.20969 0.97611 0.95022 0.92488 1.20524 0.97228 1.00246 1.03150 1.19767 0.94980 0.89618 0.87610 1.83523 1.41090 1.42848 1.47434 1.20701 0.92448 1.09873 1.24471 0.89899 1.25279 1.01463 0.94098 0.97954 1.69727 1.31529 1.18550 1.36411 0.85231 0.78450 0.79228 0.77932 1.18936 1.19580 1.18565 1.21267 0.98187 1.04432 1.01943 1.20931 0.98714 0.92588 0.94455 0.90283 0.93605 0.93291 0.89668 0.87166 0.88433 0.87535 0.89661 0.79461 0.75184 0.90544 0.89558 0.82664 0.85198 0.90562 0.87429 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.57 71.98 0.69 -1.69 16 2 C -0.08 -1.56 5.48 29.85 0.16 -1.40 16 3 C 0.11 2.40 6.16 42.90 0.26 2.66 16 4 N -0.27 -6.69 11.42 -46.95 -0.54 -7.22 16 5 N -0.26 -5.90 11.41 -47.70 -0.54 -6.45 16 6 C 0.06 0.96 6.86 42.61 0.29 1.26 16 7 C -0.10 -0.92 10.19 71.24 0.73 -0.19 16 8 C -0.07 -0.98 9.35 22.79 0.21 -0.76 16 9 C -0.14 -2.58 5.92 -19.84 -0.12 -2.69 16 10 C 0.56 10.91 7.64 86.87 0.66 11.57 16 11 O -0.54 -12.83 12.35 -3.75 -0.05 -12.87 16 12 N -0.70 -11.26 5.51 -469.44 -2.59 -13.85 16 13 C 0.18 3.31 5.80 85.63 0.50 3.81 16 14 C -0.18 -4.03 5.25 -19.84 -0.10 -4.14 16 15 C -0.04 -1.01 9.69 22.25 0.22 -0.79 16 16 C -0.19 -6.18 9.99 22.39 0.22 -5.95 16 17 C 0.13 5.39 6.65 22.58 0.15 5.54 16 18 O -0.24 -12.15 8.59 -22.67 -0.19 -12.35 16 19 C -0.40 -22.14 9.95 67.92 0.68 -21.46 16 20 H 0.08 4.82 5.44 -2.91 -0.02 4.80 16 21 C 0.01 0.60 5.49 84.83 0.47 1.06 16 22 N -0.92 -53.03 13.96 21.61 0.30 -52.73 16 23 Si 0.97 43.13 28.62 68.60 1.96 45.10 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 27 C -0.24 -9.20 9.17 22.39 0.21 -9.00 16 28 C -0.05 -1.37 9.69 22.25 0.22 -1.15 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.04 0.95 7.17 -2.39 -0.02 0.93 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.11 2.32 5.67 -2.39 -0.01 2.31 16 34 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.11 0.49 8.09 -2.39 -0.02 0.47 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.19 1.29 6.63 -2.91 -0.02 1.27 16 38 H 0.41 5.15 6.67 -92.71 -0.62 4.53 16 39 H 0.08 1.43 8.08 -2.39 -0.02 1.42 16 40 H 0.09 1.46 8.08 -2.39 -0.02 1.44 16 41 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 43 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.11 4.71 5.64 -2.91 -0.02 4.70 16 45 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -69.23 380.69 4.22 -65.01 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.42 Total: 18.69 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: 5.44 Total: -23.32 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -3.36 Total: -80.25 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.24 Total: -25.22 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.96 Total: 45.10 kcal Total: -69.23 4.22 -65.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273548092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.577 kcal (2) G-P(sol) polarization free energy of solvation -69.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds