Wall clock time and date at job start Sat Apr 11 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47154 * 2 1 4 4 C 1.53007 * 109.47230 * 182.80715 * 3 2 1 5 5 H 1.09000 * 109.46939 * 56.34975 * 4 3 2 6 6 N 1.46502 * 109.47086 * 296.35220 * 4 3 2 7 7 S 1.65593 * 119.99856 * 124.87756 * 6 4 3 8 8 O 1.42105 * 104.27715 * 179.57874 * 7 6 4 9 9 O 1.42100 * 104.27994 * 307.43164 * 7 6 4 10 10 C 1.81394 * 104.45171 * 63.50609 * 7 6 4 11 11 C 1.53005 * 109.47249 * 179.97438 * 10 7 6 12 12 C 1.50699 * 109.46934 * 180.02562 * 11 10 7 13 13 H 1.08000 * 120.00653 * 0.02562 * 12 11 10 14 14 C 1.37887 * 119.99668 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99787 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00020 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47428 * 89.99953 * 16 14 12 18 18 H 1.48504 * 109.47068 * 209.99870 * 16 14 12 19 19 H 1.48496 * 109.47207 * 329.99617 * 16 14 12 20 20 C 1.52997 * 109.47208 * 176.35000 * 4 3 2 21 21 H 1.09005 * 109.46818 * 175.00203 * 20 4 3 22 22 O 1.42893 * 109.47441 * 55.00105 * 20 4 3 23 23 C 1.50699 * 109.47112 * 294.99900 * 20 4 3 24 24 C 1.38239 * 120.00063 * 84.73022 * 23 20 4 25 25 C 1.38231 * 120.00190 * 179.78763 * 24 23 20 26 26 C 1.38236 * 120.00084 * 0.43887 * 25 24 23 27 27 C 1.38240 * 119.99655 * 359.81763 * 26 25 24 28 28 C 1.38231 * 120.00332 * 359.97124 * 27 26 25 29 29 H 1.08999 * 109.46929 * 300.00230 * 1 2 3 30 30 H 1.09008 * 109.46912 * 59.99943 * 1 2 3 31 31 H 1.08998 * 109.47317 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47447 * 239.99821 * 2 1 3 33 33 H 1.09008 * 109.46912 * 120.00056 * 2 1 3 34 34 H 1.09001 * 109.47669 * 62.81058 * 3 2 1 35 35 H 1.08995 * 109.47516 * 302.80942 * 3 2 1 36 36 H 0.96993 * 119.99555 * 304.87741 * 6 4 3 37 37 H 1.09003 * 109.47236 * 299.99640 * 10 7 6 38 38 H 1.09004 * 109.47103 * 59.99764 * 10 7 6 39 39 H 1.08993 * 109.46963 * 299.99920 * 11 10 7 40 40 H 1.08996 * 109.46781 * 59.99969 * 11 10 7 41 41 H 0.96992 * 119.99846 * 180.02562 * 15 14 12 42 42 H 0.96703 * 113.99879 * 300.00147 * 22 20 4 43 43 H 1.08006 * 119.99514 * 359.97438 * 24 23 20 44 44 H 1.08004 * 119.99997 * 180.27276 * 25 24 23 45 45 H 1.08000 * 120.00335 * 179.83047 * 26 25 24 46 46 H 1.07996 * 119.99515 * 179.97438 * 27 26 25 47 47 H 1.07996 * 120.00357 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5684 1.4430 -0.0706 5 1 3.8916 0.8878 -0.9512 6 7 4.1132 0.8100 1.1330 7 16 5.1576 -0.4677 0.9961 8 8 5.4763 -0.8054 2.3391 9 8 4.4785 -1.3865 0.1512 10 6 6.6076 0.2214 0.1517 11 6 7.6580 -0.8754 -0.0353 12 6 8.8629 -0.3027 -0.7362 13 1 8.8783 0.7394 -1.0195 14 6 9.9463 -1.1089 -1.0148 15 7 10.9976 -0.6092 -1.6269 16 14 9.9200 -2.9110 -0.5241 17 1 9.3496 -3.7177 -1.6327 18 1 11.3047 -3.3673 -0.2415 19 1 9.0851 -3.0808 0.6921 20 6 4.0742 2.8841 -0.1624 21 1 5.1635 2.8900 -0.1233 22 8 3.5542 3.6421 0.9316 23 6 3.6149 3.4959 -1.4607 24 6 2.3585 4.0657 -1.5501 25 6 1.9389 4.6309 -2.7397 26 6 2.7720 4.6182 -3.8428 27 6 4.0263 4.0437 -3.7549 28 6 4.4477 3.4824 -2.5641 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 1.7184 1.9416 0.9141 35 1 1.6362 1.9707 -0.8637 36 1 3.8620 1.1393 2.0101 37 1 6.3103 0.6100 -0.8223 38 1 7.0282 1.0282 0.7520 39 1 7.9552 -1.2636 0.9388 40 1 7.2377 -1.6824 -0.6353 41 1 11.7595 -1.1764 -1.8232 42 1 2.5883 3.6799 0.9600 43 1 1.7061 4.0720 -0.6894 44 1 0.9590 5.0800 -2.8082 45 1 2.4431 5.0573 -4.7730 46 1 4.6770 4.0335 -4.6168 47 1 5.4277 3.0340 -2.4953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280461828.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:09 Heat of formation + Delta-G solvation = -117.830029 kcal Electronic energy + Delta-G solvation = -28717.059104 eV Core-core repulsion = 24798.188466 eV Total energy + Delta-G solvation = -3918.870638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.29427 -38.03676 -36.71145 -35.67550 -35.44738 -33.98078 -33.38366 -31.86385 -31.49847 -31.09569 -28.67696 -26.53948 -25.95080 -22.90324 -22.83210 -21.44815 -21.31988 -20.76103 -19.16454 -17.99417 -17.64974 -16.99356 -16.59193 -15.98017 -15.79922 -15.61562 -15.45065 -15.18567 -14.59689 -14.34617 -14.25655 -14.17681 -13.65746 -13.58753 -13.42008 -13.13555 -12.82090 -12.68577 -12.23682 -11.99694 -11.93031 -11.79884 -11.72500 -11.64107 -11.52334 -11.32661 -11.27270 -11.25937 -11.18523 -11.03622 -10.72032 -10.65255 -10.45165 -10.15739 -9.78472 -9.51768 -9.25790 -9.11179 -8.83006 -8.67724 -6.18183 -4.19477 0.63557 1.08544 1.18751 2.95327 3.25313 3.32941 3.37169 3.53263 4.08106 4.16552 4.34517 4.37052 4.39030 4.52673 4.61669 4.73638 4.79598 4.80859 4.92171 5.05048 5.10931 5.14006 5.22030 5.26640 5.32057 5.39714 5.45802 5.54283 5.57384 5.64615 5.71205 5.74021 5.83346 5.87257 5.98372 6.17339 6.22172 6.24760 6.30411 6.31625 6.35269 6.76341 6.78790 6.90516 7.05418 7.32065 7.52909 8.34563 8.82615 9.41580 10.94135 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010737 B = 0.003875 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.081038 B = 7224.797048 C = 8851.114049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.134 4.134 4 C 0.126 3.874 5 H 0.102 0.898 6 N -1.112 6.112 7 S 2.586 3.414 8 O -0.966 6.966 9 O -0.962 6.962 10 C -0.586 4.586 11 C -0.006 4.006 12 C -0.519 4.519 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.868 3.132 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.262 1.262 20 C 0.132 3.868 21 H 0.118 0.882 22 O -0.546 6.546 23 C -0.115 4.115 24 C -0.111 4.111 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.115 4.115 28 C -0.107 4.107 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.417 0.583 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.032 0.968 40 H 0.028 0.972 41 H 0.266 0.734 42 H 0.370 0.630 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.125 0.875 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.862 10.196 -0.566 24.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.173 4.173 4 C 0.017 3.983 5 H 0.120 0.880 6 N -0.868 5.868 7 S 2.683 3.317 8 O -0.956 6.956 9 O -0.952 6.952 10 C -0.719 4.719 11 C -0.045 4.045 12 C -0.558 4.558 13 H 0.096 0.904 14 C -0.130 4.130 15 N -0.533 5.533 16 Si 0.694 3.306 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.186 1.186 20 C 0.071 3.929 21 H 0.136 0.864 22 O -0.351 6.351 23 C -0.116 4.116 24 C -0.129 4.129 25 C -0.138 4.138 26 C -0.138 4.138 27 C -0.133 4.133 28 C -0.125 4.125 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.251 0.749 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.076 0.924 42 H 0.218 0.782 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.143 0.857 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.204 9.254 -0.342 23.138 hybrid contribution -0.165 -0.229 -0.009 0.282 sum -21.369 9.026 -0.351 23.200 Atomic orbital electron populations 1.21775 0.96092 1.01642 1.01314 1.21482 0.95249 0.95820 1.03515 1.22054 0.93905 0.98750 1.02620 1.21432 0.95062 0.93543 0.88214 0.88043 1.55720 1.63415 1.54003 1.13663 1.05719 0.76384 0.74299 0.75279 1.93566 1.84984 1.82012 1.35072 1.93563 1.71743 1.60066 1.69811 1.30364 1.16482 1.12108 1.12978 1.19399 0.94284 0.92307 0.98553 1.20834 0.98135 0.98513 1.38330 0.90397 1.24978 0.95178 0.98609 0.94275 1.69878 1.06027 1.36442 1.40941 0.86940 0.77967 0.85550 0.80102 1.19668 1.20737 1.18624 1.21414 0.99769 0.88912 0.82828 0.86410 1.86658 1.25884 1.74157 1.48438 1.20459 0.95026 0.99969 0.96120 1.20854 0.95449 0.98701 0.97942 1.21090 0.99785 0.99833 0.93124 1.21197 0.94412 0.99604 0.98599 1.21212 0.96325 0.97834 0.97882 1.21163 0.99928 0.98874 0.92516 0.93029 0.92943 0.92749 0.91106 0.91567 0.91322 0.90107 0.74919 0.85951 0.85354 0.94954 0.95381 0.92373 0.78191 0.86212 0.86085 0.86117 0.85677 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.28 5.77 -26.73 -0.15 -1.44 16 3 C -0.13 -1.15 3.83 -26.73 -0.10 -1.25 16 4 C 0.13 1.31 2.05 -67.93 -0.14 1.17 16 5 H 0.10 1.12 7.64 -51.93 -0.40 0.72 16 6 N -1.11 -13.16 4.67 -4.89 -0.02 -13.18 16 7 S 2.59 42.50 5.33 -107.50 -0.57 41.93 16 8 O -0.97 -18.89 18.08 -57.54 -1.04 -19.93 16 9 O -0.96 -17.84 17.64 -57.54 -1.02 -18.86 16 10 C -0.59 -10.39 5.97 37.16 0.22 -10.17 16 11 C -0.01 -0.14 4.05 -27.88 -0.11 -0.26 16 12 C -0.52 -14.24 9.66 -34.44 -0.33 -14.58 16 13 H 0.08 2.23 7.99 -52.49 -0.42 1.82 16 14 C 0.07 2.06 5.47 -17.81 -0.10 1.96 16 15 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 16 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 20 C 0.13 1.31 3.25 -27.89 -0.09 1.22 16 21 H 0.12 1.27 8.05 -51.93 -0.42 0.85 16 22 O -0.55 -5.21 12.99 -35.23 -0.46 -5.67 16 23 C -0.11 -1.12 4.73 -104.62 -0.50 -1.61 16 24 C -0.11 -0.92 7.35 -39.58 -0.29 -1.21 16 25 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 26 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 27 C -0.11 -1.09 10.05 -39.58 -0.40 -1.48 16 28 C -0.11 -1.11 9.68 -39.58 -0.38 -1.50 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.78 7.79 -51.92 -0.40 0.38 16 34 H 0.07 0.47 6.92 -51.93 -0.36 0.11 16 35 H 0.08 0.61 5.63 -51.93 -0.29 0.32 16 36 H 0.42 4.30 8.92 -34.47 -0.31 3.99 16 37 H 0.12 1.90 8.14 -51.92 -0.42 1.48 16 38 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 39 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 40 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 41 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.37 2.36 5.63 45.56 0.26 2.61 16 43 H 0.12 0.71 6.11 -52.48 -0.32 0.39 16 44 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -34.97 391.60 -10.73 -45.70 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.82 Total: 6.24 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: -2.80 Total: -32.80 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.75 Total: -39.18 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -2.51 Total: -44.46 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 42.50 SS G_CDS: -0.57 Total: 41.93 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.97 -10.73 -45.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280461828.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.129 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds