Wall clock time and date at job start Sat Apr 11 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47023 * 2 1 4 4 C 1.50703 * 109.46898 * 239.99903 * 2 1 3 5 5 H 1.08003 * 119.99969 * 239.99860 * 4 2 1 6 6 C 1.37872 * 120.00049 * 60.00079 * 4 2 1 7 7 N 1.31524 * 120.00168 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00444 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47148 * 89.99829 * 8 6 4 10 10 H 1.48497 * 109.47646 * 210.00189 * 8 6 4 11 11 H 1.48504 * 109.46737 * 330.00185 * 8 6 4 12 12 C 1.53001 * 109.47115 * 120.00002 * 2 1 3 13 13 N 1.46496 * 109.47473 * 299.99670 * 12 2 1 14 14 C 1.34769 * 120.00508 * 179.97438 * 13 12 2 15 15 O 1.21363 * 119.99860 * 0.02562 * 14 13 12 16 16 C 1.49338 * 120.00367 * 180.02562 * 14 13 12 17 17 O 1.21383 * 120.00238 * 0.02562 * 16 14 13 18 18 N 1.34783 * 120.00233 * 180.02562 * 16 14 13 19 19 C 1.39680 * 119.99684 * 185.27940 * 18 16 14 20 20 C 1.40037 * 119.72618 * 33.68281 * 19 18 16 21 21 C 1.35882 * 120.98975 * 180.02562 * 20 19 18 22 22 C 1.40663 * 120.00365 * 0.27796 * 21 20 19 23 23 N 1.33687 * 120.91545 * 180.27356 * 22 21 20 24 24 C 1.31075 * 121.36168 * 179.74055 * 23 22 21 25 25 C 1.39335 * 121.75964 * 359.71009 * 24 23 22 26 26 C 1.36567 * 119.91831 * 359.97438 * 25 24 23 27 27 C 1.40820 * 118.15687 * 0.02562 * 26 25 24 28 28 C 1.37808 * 119.71875 * 213.69755 * 19 18 16 29 29 H 1.08996 * 109.47086 * 299.99854 * 1 2 3 30 30 H 1.08989 * 109.47092 * 60.00106 * 1 2 3 31 31 H 1.09000 * 109.46943 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46774 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47160 * 299.99919 * 3 2 1 34 34 H 1.08996 * 109.47070 * 60.00136 * 3 2 1 35 35 H 0.96991 * 120.00192 * 179.97438 * 7 6 4 36 36 H 1.09010 * 109.46758 * 179.97438 * 12 2 1 37 37 H 1.09000 * 109.46965 * 60.00399 * 12 2 1 38 38 H 0.97003 * 119.99525 * 0.02562 * 13 12 2 39 39 H 0.96994 * 119.99941 * 5.27632 * 18 16 14 40 40 H 1.07997 * 119.50092 * 359.97438 * 20 19 18 41 41 H 1.08004 * 119.99718 * 179.97438 * 21 20 19 42 42 H 1.08004 * 119.12186 * 179.72381 * 24 23 22 43 43 H 1.08001 * 120.03498 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.92021 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.27056 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.3447 -2.1615 -4.4124 10 1 2.4872 -0.1403 -5.1121 11 1 3.6307 -1.7566 -3.7120 12 6 2.0400 -0.7213 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6695 15 8 2.5746 -1.4782 3.7808 16 6 1.3788 0.2123 4.8889 17 8 0.6806 1.1990 4.7776 18 7 1.7044 -0.2482 6.1130 19 6 1.1502 0.3420 7.2513 20 6 -0.1550 0.8474 7.2059 21 6 -0.7192 1.4270 8.2977 22 6 0.0115 1.5316 9.4951 23 7 -0.5276 2.0935 10.5818 24 6 0.1435 2.1909 11.7035 25 6 1.4460 1.7106 11.8230 26 6 2.0548 1.1193 10.7531 27 6 1.3306 1.0165 9.5497 28 6 1.8926 0.4222 8.4095 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.7087 1.1612 -3.4844 36 1 3.1301 -0.7216 1.2490 37 1 1.6767 -1.7489 1.2492 38 1 0.9938 0.7578 2.3564 39 1 2.3235 -0.9893 6.2035 40 1 -0.7213 0.7761 6.2891 41 1 -1.7269 1.8119 8.2447 42 1 -0.3257 2.6557 12.5581 43 1 1.9734 1.8059 12.7607 44 1 3.0639 0.7418 10.8276 45 1 2.8991 0.0314 8.4392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411631321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:14 Heat of formation + Delta-G solvation = -12.655954 kcal Electronic energy + Delta-G solvation = -28136.032632 eV Core-core repulsion = 24118.571484 eV Total energy + Delta-G solvation = -4017.461148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.42222 -40.58510 -38.89080 -37.31879 -36.58119 -34.76005 -33.77439 -33.35800 -30.97085 -30.64772 -29.70839 -26.59007 -25.77730 -25.41200 -24.62015 -24.33743 -22.81316 -22.54315 -20.46346 -19.18625 -18.93358 -18.44555 -17.64893 -17.11835 -16.50455 -15.95442 -15.82851 -15.57654 -15.04138 -14.90060 -14.71768 -14.66114 -14.39532 -14.15769 -13.69833 -13.58735 -13.38176 -12.98940 -12.86458 -12.54571 -12.41895 -12.28549 -11.92581 -11.52100 -11.46014 -11.23537 -10.92479 -10.90635 -10.74300 -10.45539 -10.43953 -10.24243 -9.82154 -9.71200 -9.69339 -9.36090 -8.89318 -8.85755 -8.72724 -8.41909 -8.24549 -6.06684 -4.17728 0.01823 0.44907 1.35947 1.70220 2.25962 2.60129 3.25378 3.27040 3.32829 3.35757 3.65375 3.80694 4.00223 4.24366 4.34805 4.38568 4.53106 4.58384 4.70546 4.72012 4.93804 5.10829 5.20044 5.36797 5.43372 5.52106 5.72743 5.86411 5.90911 6.02187 6.05117 6.15564 6.20847 6.39656 6.49840 6.53076 6.72518 6.79019 6.83125 6.87986 6.94421 7.27064 7.44908 7.49691 7.60215 7.64130 7.76196 7.95109 8.05293 8.18714 8.33364 8.82363 9.48440 10.94715 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.035736 B = 0.001859 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.341430 B =15054.628795 C =15492.175944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 C -0.134 4.134 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.127 3.873 13 N -0.676 5.676 14 C 0.498 3.502 15 O -0.531 6.531 16 C 0.509 3.491 17 O -0.495 6.495 18 N -0.651 5.651 19 C 0.163 3.837 20 C -0.097 4.097 21 C -0.073 4.073 22 C 0.114 3.886 23 N -0.469 5.469 24 C 0.122 3.878 25 C -0.173 4.173 26 C -0.061 4.061 27 C -0.080 4.080 28 C -0.133 4.133 29 H 0.008 0.992 30 H 0.088 0.912 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.087 0.913 34 H 0.008 0.992 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.412 0.588 39 H 0.425 0.575 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.158 0.842 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.428 1.105 26.064 26.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.192 4.192 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.006 3.994 13 N -0.327 5.327 14 C 0.277 3.723 15 O -0.409 6.409 16 C 0.292 3.708 17 O -0.368 6.368 18 N -0.298 5.298 19 C 0.068 3.932 20 C -0.119 4.119 21 C -0.092 4.092 22 C -0.008 4.008 23 N -0.177 5.177 24 C -0.051 4.051 25 C -0.193 4.193 26 C -0.087 4.087 27 C -0.083 4.083 28 C -0.155 4.155 29 H 0.027 0.973 30 H 0.106 0.894 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.106 0.894 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.249 0.751 39 H 0.263 0.737 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.175 0.825 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.541 1.500 25.593 25.643 hybrid contribution 1.309 -0.755 -0.728 1.678 sum 0.768 0.745 24.865 24.888 Atomic orbital electron populations 1.21861 0.97537 0.99322 1.00430 1.18398 0.93021 0.92895 0.90224 1.21861 0.98657 0.98210 1.00430 1.20927 1.31784 1.12203 0.89710 0.92325 1.24888 0.94821 0.94900 0.98908 1.69803 1.36420 1.22604 1.23367 0.86547 0.79285 0.79364 0.82522 1.20691 1.21242 1.19907 1.22003 0.98680 0.96106 0.82642 1.46240 1.50150 1.31299 1.05038 1.19667 0.82708 0.85287 0.84641 1.90754 1.37765 1.25791 1.86572 1.20752 0.80932 0.84315 0.84800 1.90792 1.35432 1.23960 1.86575 1.43246 1.46767 1.36108 1.03675 1.17743 0.92351 0.96706 0.86369 1.20988 0.93268 0.97950 0.99665 1.20690 1.00306 0.98165 0.90019 1.18914 0.91313 0.97177 0.93390 1.68015 1.36490 1.14056 0.99127 1.22939 0.91509 0.95219 0.95404 1.21881 0.96906 1.00514 1.00017 1.21441 0.99689 0.96060 0.91491 1.18537 0.95077 1.00068 0.94613 1.20886 0.99623 1.03114 0.91839 0.97306 0.89375 0.95301 0.95301 0.89385 0.97294 0.92891 0.91795 0.91791 0.75056 0.73652 0.83696 0.84033 0.82466 0.84522 0.84341 0.84506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 4 C -0.51 -12.86 8.01 -34.44 -0.28 -13.14 16 5 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.18 9.35 55.43 0.52 -22.66 16 8 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 C 0.13 2.54 4.50 -4.04 -0.02 2.53 16 13 N -0.68 -11.79 4.95 -60.77 -0.30 -12.10 16 14 C 0.50 8.10 7.89 -11.64 -0.09 8.00 16 15 O -0.53 -9.45 16.48 5.49 0.09 -9.35 16 16 C 0.51 7.21 7.61 -11.64 -0.09 7.12 16 17 O -0.50 -7.81 14.15 5.47 0.08 -7.73 16 18 N -0.65 -7.34 5.31 -10.31 -0.05 -7.40 16 19 C 0.16 1.80 6.26 -83.77 -0.52 1.28 16 20 C -0.10 -1.13 8.55 -39.75 -0.34 -1.47 16 21 C -0.07 -0.80 9.96 -39.51 -0.39 -1.20 16 22 C 0.11 1.29 6.61 -84.81 -0.56 0.73 16 23 N -0.47 -5.13 10.34 -10.95 -0.11 -5.24 16 24 C 0.12 0.95 11.15 -17.47 -0.19 0.76 16 25 C -0.17 -1.10 10.03 -39.78 -0.40 -1.50 16 26 C -0.06 -0.44 9.89 -39.21 -0.39 -0.83 16 27 C -0.08 -0.79 5.74 -106.81 -0.61 -1.40 16 28 C -0.13 -1.23 9.71 -38.95 -0.38 -1.61 16 29 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 30 H 0.09 2.17 6.07 -51.94 -0.32 1.86 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 34 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 35 H 0.26 6.62 8.31 -40.82 -0.34 6.29 16 36 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.41 7.05 5.63 -40.82 -0.23 6.82 16 39 H 0.42 4.01 8.29 -40.82 -0.34 3.67 16 40 H 0.15 1.77 6.39 -52.49 -0.34 1.44 16 41 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 42 H 0.16 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 44 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 45 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 LS Contribution 374.23 15.07 5.64 5.64 Total: -1.00 -29.38 374.23 -8.59 -37.97 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.59 Total: 8.88 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -3.83 Total: -3.29 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.05 Total: -47.39 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.17 Total: -17.08 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.38 -8.59 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411631321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.315 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds