Wall clock time and date at job start Sat Apr 11 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 114.00512 * 2 1 4 4 C 1.52995 * 109.47216 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47283 * 65.00297 * 4 3 2 6 6 C 1.36943 * 119.99414 * 274.92341 * 5 4 3 7 7 H 1.08000 * 120.00057 * 25.33493 * 6 5 4 8 8 C 1.38813 * 119.99684 * 205.32847 * 6 5 4 9 9 N 1.31617 * 120.00112 * 24.28463 * 8 6 5 10 10 Si 1.86799 * 119.99948 * 204.27241 * 8 6 5 11 11 H 1.48506 * 109.47015 * 90.00461 * 10 8 6 12 12 H 1.48498 * 109.47385 * 210.00399 * 10 8 6 13 13 H 1.48494 * 109.47431 * 330.00974 * 10 8 6 14 14 S 1.65594 * 120.00559 * 94.92318 * 5 4 3 15 15 O 1.42097 * 106.40207 * 338.42133 * 14 5 4 16 16 O 1.42101 * 106.40408 * 205.50063 * 14 5 4 17 17 C 1.76200 * 107.21834 * 91.95992 * 14 5 4 18 18 C 1.38258 * 120.00013 * 346.42002 * 17 14 5 19 19 C 1.38215 * 120.00114 * 179.71999 * 18 17 14 20 20 C 1.38252 * 119.99675 * 0.28331 * 19 18 17 21 21 C 1.38211 * 120.00393 * 359.95540 * 20 19 18 22 22 C 1.38213 * 120.00101 * 166.61461 * 17 14 5 23 23 C 1.50698 * 120.00287 * 0.02562 * 22 17 14 24 24 C 1.52997 * 109.47376 * 161.85508 * 23 22 17 25 25 C 1.53007 * 109.46880 * 281.85835 * 23 22 17 26 26 C 1.53005 * 109.46934 * 41.85357 * 23 22 17 27 27 H 1.09005 * 109.47485 * 300.00720 * 1 2 3 28 28 H 1.09000 * 109.46997 * 60.00020 * 1 2 3 29 29 H 1.09000 * 109.47578 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47031 * 59.99558 * 3 2 1 31 31 H 1.08998 * 109.46476 * 299.99976 * 3 2 1 32 32 H 1.08996 * 109.47116 * 304.99784 * 4 3 2 33 33 H 1.09002 * 109.46759 * 184.99974 * 4 3 2 34 34 H 0.97004 * 120.00327 * 179.97438 * 9 8 6 35 35 H 1.07999 * 120.00016 * 0.02562 * 18 17 14 36 36 H 1.07998 * 119.99998 * 180.25486 * 19 18 17 37 37 H 1.08002 * 119.99989 * 179.97438 * 20 19 18 38 38 H 1.08007 * 120.00144 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47067 * 60.00125 * 24 23 22 40 40 H 1.09005 * 109.46822 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.46910 * 300.00014 * 24 23 22 42 42 H 1.08993 * 109.47080 * 35.50408 * 25 23 22 43 43 H 1.08999 * 109.46772 * 155.50383 * 25 23 22 44 44 H 1.09002 * 109.46333 * 275.50154 * 25 23 22 45 45 H 1.08994 * 109.47184 * 23.27686 * 26 23 22 46 46 H 1.09001 * 109.47023 * 143.28373 * 26 23 22 47 47 H 1.09004 * 109.47217 * 263.27732 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0012 -0.8004 -1.3670 7 1 3.3490 -1.4062 -0.7555 8 6 4.8644 -1.4045 -2.2708 9 7 5.9561 -0.7791 -2.6570 10 14 4.4765 -3.1054 -2.9387 11 1 3.6670 -2.9781 -4.1772 12 1 5.7430 -3.8171 -3.2463 13 1 3.7111 -3.8731 -1.9239 14 16 4.4457 1.5119 -2.5250 15 8 3.8540 2.7867 -2.3158 16 8 4.2337 0.7399 -3.6990 17 6 6.1871 1.7434 -2.3895 18 6 6.8390 1.4144 -1.2156 19 6 8.2059 1.5906 -1.1113 20 6 8.9204 2.1014 -2.1789 21 6 8.2681 2.4350 -3.3508 22 6 6.9009 2.2578 -3.4555 23 6 6.1897 2.6212 -4.7334 24 6 7.0727 3.5584 -5.5598 25 6 5.9028 1.3507 -5.5364 26 6 4.8714 3.3233 -4.4015 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8507 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 6.5595 -1.2014 -3.2884 35 1 6.2809 1.0150 -0.3817 36 1 8.7157 1.3296 -0.1956 37 1 9.9885 2.2395 -2.0974 38 1 8.8264 2.8337 -4.1851 39 1 8.0118 3.0582 -5.7963 40 1 6.5583 3.8208 -6.4844 41 1 7.2770 4.4634 -4.9878 42 1 5.6722 0.5334 -4.8531 43 1 5.0531 1.5227 -6.1971 44 1 6.7788 1.0912 -6.1309 45 1 4.9335 3.7605 -3.4050 46 1 4.6846 4.1099 -5.1326 47 1 4.0569 2.5995 -4.4306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414455270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:45 Heat of formation + Delta-G solvation = -50.783761 kcal Electronic energy + Delta-G solvation = -31248.668162 eV Core-core repulsion = 27332.704869 eV Total energy + Delta-G solvation = -3915.963293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -39.19735 -37.53954 -36.24275 -35.98103 -35.17427 -34.18763 -31.78349 -30.46252 -29.24057 -28.64657 -26.96483 -26.49152 -25.90951 -24.15718 -22.46922 -21.92570 -21.64309 -19.25069 -18.39791 -17.58453 -16.53313 -16.19048 -15.74212 -15.06492 -14.90657 -14.77464 -14.48893 -14.23426 -14.11307 -13.98075 -13.61963 -13.37416 -13.32294 -13.11403 -12.48868 -12.18665 -12.01325 -11.82985 -11.67472 -11.60538 -11.50316 -11.36954 -11.14786 -11.04924 -10.89703 -10.84003 -10.68941 -10.59616 -10.43233 -10.27829 -10.16911 -9.92642 -9.62974 -9.47336 -9.19206 -9.09201 -8.95187 -8.31624 -7.96157 -7.73288 -6.14682 -3.74508 1.86087 1.96916 2.20734 3.38484 3.46592 3.49758 4.21268 4.34483 4.39667 4.61159 4.95355 5.13714 5.23000 5.26642 5.46306 5.55771 5.58952 5.62036 5.68653 5.74106 5.80190 5.87361 5.90839 5.97230 5.97435 6.01862 6.08353 6.10401 6.21141 6.25413 6.29927 6.38727 6.52923 6.56942 6.61552 6.64235 6.70841 6.83953 6.89291 7.07583 7.14728 7.16811 7.22814 7.64957 7.74803 7.76310 7.82703 8.59257 9.09827 9.53920 10.85621 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012213 B = 0.006193 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.087157 B = 4520.155044 C = 5014.937676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.047 3.953 4 C 0.126 3.874 5 N -0.863 5.863 6 C -0.297 4.297 7 H 0.099 0.901 8 C 0.033 3.967 9 N -0.888 5.888 10 Si 0.929 3.071 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.277 1.277 14 S 2.716 3.284 15 O -1.018 7.018 16 O -0.943 6.943 17 C -0.561 4.561 18 C 0.010 3.990 19 C -0.152 4.152 20 C -0.097 4.097 21 C -0.149 4.149 22 C 0.010 3.990 23 C -0.048 4.048 24 C -0.135 4.135 25 C -0.158 4.158 26 C -0.214 4.214 27 H 0.031 0.969 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.276 0.724 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.126 0.874 43 H 0.049 0.951 44 H 0.035 0.965 45 H 0.102 0.898 46 H 0.065 0.935 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 6.151 2.056 6.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.032 4.032 4 C -0.002 4.002 5 N -0.694 5.694 6 C -0.426 4.426 7 H 0.117 0.883 8 C -0.169 4.169 9 N -0.531 5.531 10 Si 0.757 3.243 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.203 1.203 14 S 2.808 3.192 15 O -1.008 7.008 16 O -0.932 6.932 17 C -0.648 4.648 18 C -0.009 4.009 19 C -0.171 4.171 20 C -0.116 4.116 21 C -0.168 4.168 22 C 0.008 3.992 23 C -0.048 4.048 24 C -0.192 4.192 25 C -0.216 4.216 26 C -0.272 4.272 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.141 0.859 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.144 0.856 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.120 0.880 46 H 0.084 0.916 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.061 6.247 1.323 6.386 hybrid contribution 0.624 -0.791 -0.176 1.023 sum 0.685 5.456 1.147 5.617 Atomic orbital electron populations 1.22681 0.82953 1.02046 0.99068 1.88080 1.17853 1.27418 1.95108 1.23126 0.95861 0.84797 0.99435 1.21136 0.91660 0.97502 0.89918 1.52919 1.77671 1.15381 1.23402 1.19008 1.19789 0.79584 1.24241 0.88333 1.25088 0.93470 1.00006 0.98328 1.69698 1.09463 1.39998 1.33893 0.85893 0.77374 0.81463 0.79561 1.20373 1.21774 1.20271 1.01245 0.73808 0.71176 0.72922 1.93492 1.77020 1.42651 1.87661 1.93423 1.84127 1.70215 1.45480 1.30489 1.27544 1.07282 0.99457 1.20484 0.94217 0.90536 0.95663 1.20965 0.94745 1.02776 0.98627 1.20990 0.98556 0.98318 0.93706 1.20906 0.94074 1.03959 0.97866 1.19197 0.93538 0.94009 0.92452 1.19794 0.94926 0.96917 0.93158 1.21979 0.99269 0.98772 0.99228 1.22482 0.99243 0.98874 1.00962 1.23510 0.96342 1.02018 1.05331 0.95045 0.94620 0.90200 0.93759 0.93316 0.90326 0.90794 0.91257 0.85888 0.87119 0.87297 0.86617 0.92493 0.92632 0.92729 0.85586 0.93193 0.94601 0.88006 0.91562 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.99 9.43 -35.23 -0.33 -7.32 16 3 C 0.05 0.84 6.28 37.16 0.23 1.07 16 4 C 0.13 2.43 5.35 -4.05 -0.02 2.41 16 5 N -0.86 -19.99 1.94 -59.91 -0.12 -20.10 16 6 C -0.30 -7.47 8.91 -15.06 -0.13 -7.60 16 7 H 0.10 2.51 7.20 -52.49 -0.38 2.13 16 8 C 0.03 0.85 4.05 -17.43 -0.07 0.78 16 9 N -0.89 -22.62 7.19 55.49 0.40 -22.22 16 10 Si 0.93 21.67 29.62 -169.99 -5.03 16.64 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 S 2.72 64.17 2.91 -107.50 -0.31 63.85 16 15 O -1.02 -23.83 13.01 -57.17 -0.74 -24.58 16 16 O -0.94 -24.37 9.30 -57.17 -0.53 -24.90 16 17 C -0.56 -12.42 3.37 -39.58 -0.13 -12.55 16 18 C 0.01 0.21 8.28 -39.58 -0.33 -0.11 16 19 C -0.15 -2.79 10.05 -39.58 -0.40 -3.19 16 20 C -0.10 -1.68 10.05 -39.59 -0.40 -2.08 16 21 C -0.15 -2.72 9.12 -39.58 -0.36 -3.08 16 22 C 0.01 0.20 4.50 -104.62 -0.47 -0.27 16 23 C -0.05 -0.92 0.74 -155.66 -0.11 -1.04 16 24 C -0.14 -2.08 7.04 37.16 0.26 -1.82 16 25 C -0.16 -3.26 7.71 37.16 0.29 -2.98 16 26 C -0.21 -4.31 6.72 37.16 0.25 -4.06 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.42 8.08 -51.93 -0.42 1.00 16 33 H 0.07 1.29 7.56 -51.93 -0.39 0.90 16 34 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.12 2.53 6.94 -52.49 -0.36 2.17 16 36 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.12 1.80 5.97 -52.48 -0.31 1.49 16 39 H 0.06 0.81 6.71 -51.93 -0.35 0.46 16 40 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.13 3.02 4.42 -51.93 -0.23 2.79 16 43 H 0.05 0.98 7.89 -51.93 -0.41 0.57 16 44 H 0.03 0.66 7.90 -51.93 -0.41 0.25 16 45 H 0.10 2.14 5.07 -51.93 -0.26 1.88 16 46 H 0.07 1.13 7.73 -51.93 -0.40 0.72 16 47 H 0.07 1.60 4.55 -38.83 -0.18 1.42 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -29.15 359.32 -8.59 -37.74 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.05 Total: 8.44 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: -0.29 Total: -32.97 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.28 Total: -42.32 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: -1.61 Total: -56.79 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Atomic # 16 Polarization: 64.17 SS G_CDS: -0.31 Total: 63.85 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.15 -8.59 -37.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414455270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.043 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds