Wall clock time and date at job start Sat Apr 11 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99479 * 2 1 4 4 C 1.52996 * 109.47284 * 85.00478 * 3 2 1 5 5 C 1.50702 * 109.47489 * 179.97438 * 4 3 2 6 6 C 1.38164 * 120.02568 * 264.99780 * 5 4 3 7 7 C 1.38240 * 120.05545 * 179.97438 * 6 5 4 8 8 C 1.38290 * 120.11205 * 0.02615 * 7 6 5 9 9 C 1.38120 * 120.05648 * 0.02562 * 8 7 6 10 10 C 1.38703 * 120.02867 * 84.71621 * 5 4 3 11 11 O 1.35900 * 120.05803 * 0.02562 * 10 5 4 12 12 S 1.65597 * 120.00269 * 180.02562 * 2 1 3 13 13 O 1.42097 * 104.27492 * 26.07293 * 12 2 1 14 14 O 1.42105 * 104.27623 * 153.92636 * 12 2 1 15 15 C 1.81394 * 104.45017 * 269.99954 * 12 2 1 16 16 C 1.52996 * 109.47250 * 179.97438 * 15 12 2 17 17 C 1.52997 * 109.47291 * 299.99874 * 16 15 12 18 18 C 1.53005 * 109.47132 * 59.99954 * 16 15 12 19 19 C 1.50706 * 109.47445 * 180.02562 * 16 15 12 20 20 H 1.07998 * 119.99694 * 0.83677 * 19 16 15 21 21 C 1.37873 * 120.00296 * 180.83890 * 19 16 15 22 22 N 1.31514 * 120.00390 * 194.57630 * 21 19 16 23 23 Si 1.86803 * 119.99848 * 14.57424 * 21 19 16 24 24 H 1.48505 * 109.46944 * 84.45723 * 23 21 19 25 25 H 1.48498 * 109.47032 * 204.45399 * 23 21 19 26 26 H 1.48499 * 109.47197 * 324.45822 * 23 21 19 27 27 H 1.08996 * 109.47146 * 90.00158 * 1 2 3 28 28 H 1.09001 * 109.46922 * 209.99906 * 1 2 3 29 29 H 1.08996 * 109.47372 * 329.99831 * 1 2 3 30 30 H 1.08995 * 109.47304 * 324.99901 * 3 2 1 31 31 H 1.09005 * 109.46736 * 204.99767 * 3 2 1 32 32 H 1.09004 * 109.47480 * 59.99343 * 4 3 2 33 33 H 1.09004 * 109.46899 * 299.99832 * 4 3 2 34 34 H 1.08003 * 119.97270 * 359.97438 * 6 5 4 35 35 H 1.08005 * 119.94100 * 179.97438 * 7 6 5 36 36 H 1.08007 * 119.96984 * 179.97438 * 8 7 6 37 37 H 1.07991 * 120.02787 * 179.97438 * 9 8 7 38 38 H 0.96691 * 114.00393 * 89.99470 * 11 10 5 39 39 H 1.09004 * 109.47311 * 299.99683 * 15 12 2 40 40 H 1.08996 * 109.47162 * 59.99671 * 15 12 2 41 41 H 1.09003 * 109.46620 * 70.23626 * 17 16 15 42 42 H 1.08998 * 109.47358 * 190.22606 * 17 16 15 43 43 H 1.08992 * 109.47071 * 310.23278 * 17 16 15 44 44 H 1.09000 * 109.46687 * 60.00299 * 18 16 15 45 45 H 1.08994 * 109.47088 * 179.97438 * 18 16 15 46 46 H 1.08998 * 109.46868 * 300.00371 * 18 16 15 47 47 H 0.96997 * 120.00551 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3436 1.7734 1.4370 5 6 3.0975 3.0782 1.4371 6 6 4.4634 3.0875 1.6450 7 6 5.1557 4.2840 1.6447 8 6 4.4833 5.4745 1.4369 9 6 3.1178 5.4707 1.2297 10 6 2.4217 4.2704 1.2227 11 8 1.0790 4.2634 1.0128 12 16 2.2930 -1.4341 -0.0006 13 8 1.3970 -2.3558 -0.6063 14 8 3.5395 -1.1187 -0.6058 15 6 2.5194 -1.8268 1.7557 16 6 3.2809 -3.1471 1.8891 17 6 2.4842 -4.2658 1.2150 18 6 4.6484 -3.0174 1.2151 19 6 3.4684 -3.4738 3.3483 20 1 3.0712 -2.8133 4.1049 21 6 4.1472 -4.6157 3.7175 22 7 4.0697 -5.0559 4.9543 23 14 5.1767 -5.5377 2.4607 24 1 6.5250 -4.9208 2.3769 25 1 5.3071 -6.9581 2.8739 26 1 4.5166 -5.4671 1.1324 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6500 2.0043 -0.5894 31 1 3.1857 1.1178 -0.4343 32 1 2.8910 1.0378 2.0265 33 1 1.3553 1.9243 1.8713 34 1 4.9907 2.1591 1.8079 35 1 6.2233 4.2892 1.8078 36 1 5.0264 6.4081 1.4376 37 1 2.5931 6.4007 1.0680 38 1 0.5541 4.3404 1.8212 39 1 3.0867 -1.0297 2.2362 40 1 1.5452 -1.9196 2.2358 41 1 2.5030 -4.1248 0.1343 42 1 2.9292 -5.2293 1.4633 43 1 1.4529 -4.2403 1.5669 44 1 5.2160 -2.2204 1.6955 45 1 5.1911 -3.9578 1.3105 46 1 4.5123 -2.7813 0.1597 47 1 4.5469 -5.8594 5.2140 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451397021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:22 Heat of formation + Delta-G solvation = -72.762855 kcal Electronic energy + Delta-G solvation = -28985.109639 eV Core-core repulsion = 25068.193260 eV Total energy + Delta-G solvation = -3916.916378 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.14681 -36.92341 -36.79721 -36.76897 -36.59606 -35.44868 -32.99597 -31.95612 -30.18630 -28.74779 -27.48925 -26.39180 -26.05247 -25.02336 -23.31487 -22.80360 -21.21122 -19.65451 -18.63617 -18.42849 -17.54994 -16.46465 -16.19818 -16.19074 -15.96488 -15.69850 -15.40594 -15.18087 -14.48293 -14.21381 -13.91369 -13.71802 -13.49334 -13.16952 -13.15283 -12.88311 -12.79052 -12.62851 -12.42357 -12.24066 -12.17316 -12.07273 -11.83803 -11.56841 -11.55353 -11.29132 -11.09631 -11.01423 -10.88231 -10.76574 -10.55803 -10.17402 -10.06903 -10.01394 -9.31369 -9.05053 -8.92978 -8.76574 -8.64133 -8.46922 -6.20670 -4.18022 0.67101 1.02136 1.11288 2.93871 3.24412 3.33919 3.38007 3.41682 3.99234 4.21331 4.33070 4.45473 4.57544 4.63594 4.76591 4.89519 5.04155 5.08630 5.13286 5.22912 5.31687 5.33470 5.39817 5.48009 5.52198 5.62240 5.67052 5.79142 5.80821 5.96953 6.02224 6.05778 6.14351 6.22118 6.27044 6.31308 6.37253 6.42639 6.47939 6.58680 6.61919 6.72756 6.86066 7.11965 7.30038 7.41319 7.61307 8.37464 8.81863 9.43465 10.91817 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.003572 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.417047 B = 7836.845091 C = 8864.833200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.010 6.010 3 C 0.124 3.876 4 C -0.102 4.102 5 C -0.102 4.102 6 C -0.098 4.098 7 C -0.125 4.125 8 C -0.110 4.110 9 C -0.147 4.147 10 C 0.106 3.894 11 O -0.495 6.495 12 S 2.587 3.413 13 O -0.960 6.960 14 O -0.962 6.962 15 C -0.575 4.575 16 C 0.054 3.946 17 C -0.170 4.170 18 C -0.181 4.181 19 C -0.507 4.507 20 H 0.078 0.922 21 C 0.078 3.922 22 N -0.889 5.889 23 Si 0.873 3.127 24 H -0.281 1.281 25 H -0.301 1.301 26 H -0.246 1.246 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.388 0.612 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.036 0.964 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 19.896 -6.440 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.845 5.845 3 C -0.002 4.002 4 C -0.141 4.141 5 C -0.103 4.103 6 C -0.116 4.116 7 C -0.143 4.143 8 C -0.128 4.128 9 C -0.165 4.165 10 C 0.062 3.938 11 O -0.305 6.305 12 S 2.685 3.315 13 O -0.950 6.950 14 O -0.952 6.952 15 C -0.708 4.708 16 C 0.052 3.948 17 C -0.228 4.228 18 C -0.238 4.238 19 C -0.546 4.546 20 H 0.096 0.904 21 C -0.126 4.126 22 N -0.525 5.525 23 Si 0.704 3.296 24 H -0.208 1.208 25 H -0.229 1.229 26 H -0.172 1.172 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.243 0.757 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.990 19.265 -7.720 21.134 hybrid contribution 0.387 -0.213 0.792 0.907 sum -3.602 19.052 -6.928 20.590 Atomic orbital electron populations 1.21413 0.78707 1.02812 1.02064 1.57628 1.15021 1.21504 1.90376 1.21317 0.98059 0.85167 0.95671 1.21042 1.00726 0.93723 0.98633 1.20125 0.94538 0.94676 1.00986 1.21158 0.93129 0.98869 0.98460 1.21211 1.00281 0.92360 1.00460 1.21037 0.93861 0.98353 0.99571 1.21394 0.95085 0.97539 1.02485 1.18308 0.83709 0.91783 1.00035 1.84831 1.14171 1.95936 1.35585 1.05856 0.73774 0.72546 0.79297 1.93553 1.64821 1.61652 1.75005 1.93526 1.43595 1.82872 1.75207 1.30469 1.10105 1.08831 1.21429 1.18233 0.90345 0.87441 0.98827 1.22678 1.01006 1.01211 0.97888 1.22812 0.99684 1.01869 0.99413 1.20641 1.37127 1.08540 0.88286 0.90421 1.24957 0.96148 0.96285 0.95166 1.69931 1.41435 1.23033 1.18117 0.87456 0.81325 0.77917 0.82858 1.20792 1.22898 1.17187 0.92657 0.91026 0.91137 0.89800 0.88765 0.90354 0.90125 0.84990 0.85626 0.85785 0.85610 0.75662 0.85825 0.85640 0.94469 0.91436 0.92356 0.91816 0.93011 0.93231 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.06 10.22 59.84 0.61 1.67 16 2 N -1.01 -13.70 3.12 -121.76 -0.38 -14.08 16 3 C 0.12 1.52 5.62 -4.04 -0.02 1.49 16 4 C -0.10 -1.11 5.39 -27.88 -0.15 -1.26 16 5 C -0.10 -1.09 5.15 -104.48 -0.54 -1.62 16 6 C -0.10 -1.03 9.68 -39.61 -0.38 -1.42 16 7 C -0.13 -1.15 10.04 -39.56 -0.40 -1.55 16 8 C -0.11 -0.93 10.04 -39.61 -0.40 -1.33 16 9 C -0.15 -1.30 9.99 -39.43 -0.39 -1.69 16 10 C 0.11 1.04 6.68 -39.22 -0.26 0.78 16 11 O -0.50 -4.21 12.65 -19.43 -0.25 -4.45 16 12 S 2.59 45.65 4.42 -107.50 -0.47 45.17 16 13 O -0.96 -19.08 14.93 -57.54 -0.86 -19.94 16 14 O -0.96 -18.81 14.15 -57.54 -0.81 -19.63 16 15 C -0.58 -10.50 5.10 37.16 0.19 -10.31 16 16 C 0.05 1.24 0.52 -155.66 -0.08 1.16 16 17 C -0.17 -3.85 6.95 37.16 0.26 -3.59 16 18 C -0.18 -4.04 7.22 37.16 0.27 -3.78 16 19 C -0.51 -13.50 8.62 -34.44 -0.30 -13.80 16 20 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 21 C 0.08 2.16 5.31 -17.82 -0.09 2.07 16 22 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 23 Si 0.87 21.45 22.79 -169.99 -3.87 17.57 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 26 H -0.25 -5.68 4.67 56.52 0.26 -5.42 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.78 7.79 -51.93 -0.40 0.37 16 29 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 30 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 31 H 0.09 1.27 6.82 -51.93 -0.35 0.91 16 32 H 0.08 0.88 6.87 -51.93 -0.36 0.52 16 33 H 0.08 0.75 7.70 -51.93 -0.40 0.35 16 34 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.39 1.65 9.06 45.56 0.41 2.06 16 39 H 0.12 2.02 6.96 -51.92 -0.36 1.66 16 40 H 0.13 2.09 8.14 -51.93 -0.42 1.66 16 41 H 0.04 0.79 6.21 -51.93 -0.32 0.47 16 42 H 0.07 1.57 4.32 -51.93 -0.22 1.34 16 43 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.05 1.20 2.28 -51.93 -0.12 1.08 16 46 H 0.05 1.04 5.46 -51.93 -0.28 0.76 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 372.11 15.07 5.61 5.61 Total: -1.00 -34.09 372.11 -8.28 -42.37 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.33 Total: 6.03 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: -1.69 Total: -33.17 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.39 Total: -39.56 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -1.92 Total: -44.02 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -3.87 Total: 17.57 kcal Atomic # 16 Polarization: 45.65 SS G_CDS: -0.47 Total: 45.17 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.09 -8.28 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451397021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.390 kcal (2) G-P(sol) polarization free energy of solvation -34.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds