Wall clock time and date at job start Sat Apr 11 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 119.99830 * 2 1 4 4 C 1.53005 * 109.46633 * 274.99974 * 3 2 1 5 5 O 1.42896 * 109.47157 * 65.00416 * 4 3 2 6 6 C 1.42895 * 113.99836 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47334 * 60.00104 * 6 5 4 8 8 C 1.53005 * 109.47198 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.47359 * 299.99794 * 6 5 4 10 10 S 1.65598 * 119.99974 * 179.97438 * 2 1 3 11 11 O 1.42094 * 106.40450 * 336.46000 * 10 2 1 12 12 O 1.42103 * 106.40254 * 203.53729 * 10 2 1 13 13 C 1.76199 * 107.21901 * 90.00127 * 10 2 1 14 14 C 1.38666 * 119.87503 * 270.29735 * 13 10 2 15 15 C 1.38607 * 120.49828 * 180.25779 * 14 13 10 16 16 C 1.37636 * 120.25456 * 359.43892 * 15 14 13 17 17 C 1.40700 * 119.74119 * 0.27918 * 16 15 14 18 18 C 1.41395 * 120.24489 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99752 * 155.21583 * 18 17 16 20 20 C 1.39943 * 120.00140 * 335.22111 * 18 17 16 21 21 N 1.30825 * 119.99659 * 342.29759 * 20 18 17 22 22 Si 1.86793 * 120.00350 * 162.30068 * 20 18 17 23 23 H 1.48499 * 109.47276 * 94.95922 * 22 20 18 24 24 H 1.48501 * 109.47435 * 214.96514 * 22 20 18 25 25 H 1.48503 * 109.47194 * 334.96194 * 22 20 18 26 26 C 1.37601 * 119.88000 * 89.99699 * 13 10 2 27 27 H 1.09007 * 109.46876 * 270.00181 * 1 2 3 28 28 H 1.08992 * 109.47275 * 29.99805 * 1 2 3 29 29 H 1.08996 * 109.47034 * 150.00096 * 1 2 3 30 30 H 1.08997 * 109.47234 * 34.99863 * 3 2 1 31 31 H 1.08998 * 109.47107 * 155.00192 * 3 2 1 32 32 H 1.09003 * 109.46406 * 184.99852 * 4 3 2 33 33 H 1.08998 * 109.46926 * 304.99746 * 4 3 2 34 34 H 1.08996 * 109.47516 * 59.99835 * 7 6 5 35 35 H 1.09003 * 109.47622 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.46917 * 299.99681 * 7 6 5 37 37 H 1.09003 * 109.46532 * 59.99960 * 8 6 5 38 38 H 1.08997 * 109.47420 * 179.97438 * 8 6 5 39 39 H 1.08998 * 109.47126 * 300.00417 * 8 6 5 40 40 H 1.09000 * 109.46956 * 59.99652 * 9 6 5 41 41 H 1.08997 * 109.46950 * 180.02562 * 9 6 5 42 42 H 1.08999 * 109.46623 * 300.00284 * 9 6 5 43 43 H 1.07998 * 119.74828 * 359.97438 * 14 13 10 44 44 H 1.08000 * 119.87066 * 179.71817 * 15 14 13 45 45 H 1.07992 * 120.13479 * 180.25314 * 16 15 14 46 46 H 0.97003 * 120.00059 * 180.02562 * 21 20 18 47 47 H 1.08000 * 120.12179 * 0.04341 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3436 1.7732 -1.4371 5 8 1.0529 2.0819 -1.9671 6 6 1.0771 2.5648 -3.3117 7 6 1.6976 1.5043 -4.2234 8 6 -0.3514 2.8605 -3.7732 9 6 1.9107 3.8460 -3.3787 10 16 2.2930 -1.4341 0.0006 11 8 1.4114 -2.4062 0.5455 12 8 3.5760 -1.1565 0.5449 13 6 2.5538 -1.8866 -1.6822 14 6 1.6118 -2.6600 -2.3435 15 6 1.8064 -3.0278 -3.6656 16 6 2.9339 -2.6185 -4.3405 17 6 3.8937 -1.8286 -3.6814 18 6 5.0562 -1.4026 -4.3644 19 1 5.5765 -0.5129 -4.0417 20 6 5.5325 -2.1338 -5.4584 21 7 5.1366 -3.3669 -5.6432 22 14 6.7335 -1.3492 -6.6547 23 1 8.1223 -1.7022 -6.2649 24 1 6.4625 -1.8481 -8.0269 25 1 6.5706 0.1265 -6.6234 26 6 3.6885 -1.4660 -2.3371 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6501 2.0043 0.5894 31 1 3.1858 1.1178 0.4343 32 1 2.9639 2.6695 -1.4462 33 1 2.8119 1.0010 -2.0474 34 1 1.1038 0.5916 -4.1758 35 1 1.7165 1.8728 -5.2491 36 1 2.7153 1.2932 -3.8949 37 1 -0.7939 3.6159 -3.1237 38 1 -0.3330 3.2293 -4.7987 39 1 -0.9450 1.9476 -3.7256 40 1 2.9283 3.6349 -3.0500 41 1 1.9288 4.2145 -4.4043 42 1 1.4686 4.6014 -2.7292 43 1 0.7220 -2.9819 -1.8230 44 1 1.0683 -3.6342 -4.1694 45 1 3.0816 -2.9028 -5.3718 46 1 5.4670 -3.8740 -6.4013 47 1 4.4189 -0.8602 -1.8214 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619491904.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:07 Heat of formation + Delta-G solvation = -109.344779 kcal Electronic energy + Delta-G solvation = -29843.817188 eV Core-core repulsion = 25925.314498 eV Total energy + Delta-G solvation = -3918.502690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.97381 -37.63836 -36.71072 -36.11943 -35.26838 -33.85140 -33.09882 -30.10765 -29.80957 -29.51468 -27.39016 -27.16760 -25.51108 -25.45906 -22.44411 -21.73407 -20.99430 -19.88779 -18.59450 -17.89410 -17.04083 -16.24937 -16.13403 -15.91157 -15.42222 -15.05063 -14.88737 -14.63812 -14.25751 -13.60276 -13.56255 -13.39844 -13.31733 -13.29019 -12.70443 -12.59574 -12.37354 -12.07558 -11.96263 -11.91493 -11.74423 -11.63907 -11.58663 -11.50012 -11.41770 -11.35336 -11.23751 -11.21813 -11.07042 -10.89047 -10.79552 -10.62642 -10.33170 -9.78898 -9.61229 -9.35967 -9.28310 -8.70058 -8.00914 -7.69933 -6.93511 -4.54638 1.01448 2.20890 2.62267 2.97780 2.99628 3.05412 3.50253 3.79342 3.80676 4.28474 4.42850 4.87501 4.91511 4.94554 5.01683 5.14179 5.30810 5.38982 5.48539 5.52287 5.54407 5.62352 5.72491 5.76203 5.80120 5.90359 5.95769 5.98823 6.02802 6.08197 6.12402 6.18260 6.20283 6.30567 6.36649 6.61880 6.63170 6.72431 6.77052 6.94657 7.04503 7.21814 7.38481 7.46028 7.72660 7.78670 7.93346 8.38714 8.66106 8.70965 10.02176 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009448 B = 0.005389 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.798788 B = 5194.540151 C = 6855.714182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.996 5.996 3 C 0.123 3.877 4 C 0.027 3.973 5 O -0.370 6.370 6 C 0.107 3.893 7 C -0.177 4.177 8 C -0.134 4.134 9 C -0.177 4.177 10 S 2.683 3.317 11 O -0.973 6.973 12 O -0.972 6.972 13 C -0.628 4.628 14 C -0.142 4.142 15 C -0.121 4.121 16 C -0.116 4.116 17 C 0.095 3.905 18 C -0.461 4.461 19 H 0.081 0.919 20 C 0.076 3.924 21 N -0.794 5.794 22 Si 0.908 3.092 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.260 1.260 26 C -0.127 4.127 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.123 0.877 46 H 0.283 0.717 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.368 11.482 2.360 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.833 5.833 3 C -0.003 4.003 4 C -0.051 4.051 5 O -0.289 6.289 6 C 0.068 3.932 7 C -0.234 4.234 8 C -0.191 4.191 9 C -0.234 4.234 10 S 2.779 3.221 11 O -0.963 6.963 12 O -0.963 6.963 13 C -0.720 4.720 14 C -0.163 4.163 15 C -0.140 4.140 16 C -0.136 4.136 17 C 0.092 3.908 18 C -0.490 4.490 19 H 0.099 0.901 20 C -0.142 4.142 21 N -0.419 5.419 22 Si 0.732 3.268 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.183 1.183 26 C -0.149 4.149 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.115 0.885 45 H 0.141 0.859 46 H 0.094 0.906 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.264 10.825 3.106 13.401 hybrid contribution 0.850 0.222 -1.702 1.915 sum -6.413 11.047 1.404 12.851 Atomic orbital electron populations 1.21417 0.78292 1.03712 1.01059 1.57353 1.15244 1.20743 1.89973 1.21420 0.98055 0.85517 0.95321 1.23227 0.86326 0.99932 0.95584 1.87895 1.28208 1.85272 1.27570 1.21465 0.95977 0.92683 0.83079 1.22394 1.02469 0.99309 0.99222 1.21724 0.94628 1.02165 1.00627 1.22419 1.00716 0.97978 1.02320 1.01930 0.72643 0.72137 0.75357 1.93503 1.66395 1.58368 1.78047 1.93504 1.40160 1.84487 1.78112 1.29806 1.04868 1.14315 1.22964 1.20063 0.98317 1.02386 0.95583 1.20794 0.97962 1.00642 0.94608 1.21611 0.92248 0.99786 0.99954 1.17625 0.92394 0.90662 0.90138 1.19552 1.08602 1.09984 1.10904 0.90132 1.25905 0.96685 0.93950 0.97647 1.69785 1.37801 1.07606 1.26688 0.86299 0.80378 0.80749 0.79400 1.19403 1.19956 1.18334 1.20666 0.95603 1.03936 0.94654 0.93341 0.89942 0.91447 0.89678 0.87724 0.92444 0.91270 0.91389 0.92177 0.91356 0.92309 0.91532 0.91826 0.92074 0.91824 0.92188 0.87799 0.88528 0.85913 0.90596 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.34 10.11 59.85 0.60 1.95 16 2 N -1.00 -15.35 3.17 -121.75 -0.39 -15.74 16 3 C 0.12 1.63 6.11 -4.04 -0.02 1.61 16 4 C 0.03 0.38 5.48 37.16 0.20 0.58 16 5 O -0.37 -5.06 8.36 -35.23 -0.29 -5.36 16 6 C 0.11 1.34 1.14 -90.62 -0.10 1.24 16 7 C -0.18 -2.59 8.25 37.16 0.31 -2.29 16 8 C -0.13 -1.43 8.84 37.16 0.33 -1.10 16 9 C -0.18 -1.91 8.25 37.16 0.31 -1.61 16 10 S 2.68 52.07 5.65 -107.50 -0.61 51.46 16 11 O -0.97 -20.56 16.35 -57.17 -0.93 -21.49 16 12 O -0.97 -20.55 15.82 -57.17 -0.90 -21.46 16 13 C -0.63 -13.63 5.97 -39.66 -0.24 -13.86 16 14 C -0.14 -3.08 9.53 -39.29 -0.37 -3.46 16 15 C -0.12 -2.67 10.02 -39.66 -0.40 -3.07 16 16 C -0.12 -2.82 8.70 -38.87 -0.34 -3.16 16 17 C 0.10 2.37 5.57 -106.82 -0.60 1.77 16 18 C -0.46 -11.43 9.05 -37.74 -0.34 -11.77 16 19 H 0.08 1.91 7.91 -52.49 -0.41 1.49 16 20 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 21 N -0.79 -19.55 10.97 55.55 0.61 -18.95 16 22 Si 0.91 17.72 29.59 -169.99 -5.03 12.69 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 25 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 26 C -0.13 -2.96 8.11 -38.87 -0.32 -3.27 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.01 6.67 -51.93 -0.35 0.66 16 29 H 0.07 0.93 7.79 -51.93 -0.40 0.52 16 30 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 31 H 0.10 1.38 6.91 -51.93 -0.36 1.02 16 32 H 0.06 0.68 6.42 -51.93 -0.33 0.35 16 33 H 0.07 1.12 5.23 -51.93 -0.27 0.85 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.12 6.54 -51.93 -0.34 0.78 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.68 6.54 -51.93 -0.34 0.34 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 2.06 7.61 -52.49 -0.40 1.67 16 44 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 45 H 0.12 3.05 6.18 -52.49 -0.32 2.73 16 46 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 47 H 0.11 2.42 7.60 -52.49 -0.40 2.02 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -29.31 386.49 -10.08 -39.39 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.29 Total: 8.34 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: -1.07 Total: -34.71 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.22 Total: -34.68 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -2.13 Total: -48.30 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.61 Total: 51.46 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.31 -10.08 -39.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491904.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.958 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds