Wall clock time and date at job start Sat Apr 11 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 119.99830 * 2 1 4 4 C 1.53005 * 109.46633 * 274.99974 * 3 2 1 5 5 O 1.42896 * 109.47157 * 65.00416 * 4 3 2 6 6 C 1.42895 * 113.99836 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47334 * 60.00104 * 6 5 4 8 8 C 1.53005 * 109.47198 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.47359 * 299.99794 * 6 5 4 10 10 S 1.65598 * 119.99974 * 179.97438 * 2 1 3 11 11 O 1.42094 * 106.40450 * 336.46000 * 10 2 1 12 12 O 1.42103 * 106.40254 * 203.53729 * 10 2 1 13 13 C 1.76199 * 107.21901 * 90.00127 * 10 2 1 14 14 C 1.38666 * 119.87503 * 270.29735 * 13 10 2 15 15 C 1.38607 * 120.49828 * 180.25779 * 14 13 10 16 16 C 1.37636 * 120.25456 * 359.43892 * 15 14 13 17 17 C 1.40700 * 119.74119 * 0.27918 * 16 15 14 18 18 C 1.41395 * 120.24489 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99752 * 155.21583 * 18 17 16 20 20 C 1.39943 * 120.00140 * 335.22111 * 18 17 16 21 21 N 1.30825 * 119.99659 * 342.29759 * 20 18 17 22 22 Si 1.86793 * 120.00350 * 162.30068 * 20 18 17 23 23 H 1.48499 * 109.47276 * 94.95922 * 22 20 18 24 24 H 1.48501 * 109.47435 * 214.96514 * 22 20 18 25 25 H 1.48503 * 109.47194 * 334.96194 * 22 20 18 26 26 C 1.37601 * 119.88000 * 89.99699 * 13 10 2 27 27 H 1.09007 * 109.46876 * 270.00181 * 1 2 3 28 28 H 1.08992 * 109.47275 * 29.99805 * 1 2 3 29 29 H 1.08996 * 109.47034 * 150.00096 * 1 2 3 30 30 H 1.08997 * 109.47234 * 34.99863 * 3 2 1 31 31 H 1.08998 * 109.47107 * 155.00192 * 3 2 1 32 32 H 1.09003 * 109.46406 * 184.99852 * 4 3 2 33 33 H 1.08998 * 109.46926 * 304.99746 * 4 3 2 34 34 H 1.08996 * 109.47516 * 59.99835 * 7 6 5 35 35 H 1.09003 * 109.47622 * 180.02562 * 7 6 5 36 36 H 1.09000 * 109.46917 * 299.99681 * 7 6 5 37 37 H 1.09003 * 109.46532 * 59.99960 * 8 6 5 38 38 H 1.08997 * 109.47420 * 179.97438 * 8 6 5 39 39 H 1.08998 * 109.47126 * 300.00417 * 8 6 5 40 40 H 1.09000 * 109.46956 * 59.99652 * 9 6 5 41 41 H 1.08997 * 109.46950 * 180.02562 * 9 6 5 42 42 H 1.08999 * 109.46623 * 300.00284 * 9 6 5 43 43 H 1.07998 * 119.74828 * 359.97438 * 14 13 10 44 44 H 1.08000 * 119.87066 * 179.71817 * 15 14 13 45 45 H 1.07992 * 120.13479 * 180.25314 * 16 15 14 46 46 H 0.97003 * 120.00059 * 180.02562 * 21 20 18 47 47 H 1.08000 * 120.12179 * 0.04341 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3436 1.7732 -1.4371 5 8 1.0529 2.0819 -1.9671 6 6 1.0771 2.5648 -3.3117 7 6 1.6976 1.5043 -4.2234 8 6 -0.3514 2.8605 -3.7732 9 6 1.9107 3.8460 -3.3787 10 16 2.2930 -1.4341 0.0006 11 8 1.4114 -2.4062 0.5455 12 8 3.5760 -1.1565 0.5449 13 6 2.5538 -1.8866 -1.6822 14 6 1.6118 -2.6600 -2.3435 15 6 1.8064 -3.0278 -3.6656 16 6 2.9339 -2.6185 -4.3405 17 6 3.8937 -1.8286 -3.6814 18 6 5.0562 -1.4026 -4.3644 19 1 5.5765 -0.5129 -4.0417 20 6 5.5325 -2.1338 -5.4584 21 7 5.1366 -3.3669 -5.6432 22 14 6.7335 -1.3492 -6.6547 23 1 8.1223 -1.7022 -6.2649 24 1 6.4625 -1.8481 -8.0269 25 1 6.5706 0.1265 -6.6234 26 6 3.6885 -1.4660 -2.3371 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6501 2.0043 0.5894 31 1 3.1858 1.1178 0.4343 32 1 2.9639 2.6695 -1.4462 33 1 2.8119 1.0010 -2.0474 34 1 1.1038 0.5916 -4.1758 35 1 1.7165 1.8728 -5.2491 36 1 2.7153 1.2932 -3.8949 37 1 -0.7939 3.6159 -3.1237 38 1 -0.3330 3.2293 -4.7987 39 1 -0.9450 1.9476 -3.7256 40 1 2.9283 3.6349 -3.0500 41 1 1.9288 4.2145 -4.4043 42 1 1.4686 4.6014 -2.7292 43 1 0.7220 -2.9819 -1.8230 44 1 1.0683 -3.6342 -4.1694 45 1 3.0816 -2.9028 -5.3718 46 1 5.4670 -3.8740 -6.4013 47 1 4.4189 -0.8602 -1.8214 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619491904.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:06 Heat of formation + Delta-G solvation = -126.505178 kcal Electronic energy + Delta-G solvation = -29844.561318 eV Core-core repulsion = 25925.314498 eV Total energy + Delta-G solvation = -3919.246820 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.02562 -39.42032 -38.33847 -37.29718 -36.90448 -35.65936 -34.13602 -31.91912 -31.58659 -30.62523 -28.26969 -28.24237 -27.33114 -26.61771 -23.80960 -23.28053 -22.79367 -20.91610 -20.20897 -19.45558 -18.47385 -17.78443 -17.38621 -17.25361 -16.98508 -16.53495 -16.34537 -16.00009 -15.48842 -15.17788 -15.09195 -14.63361 -14.54453 -14.38811 -14.30945 -13.94428 -13.66867 -13.47921 -13.29236 -13.19884 -13.07990 -13.05844 -12.93971 -12.87513 -12.85438 -12.63344 -12.59712 -12.58421 -12.47407 -12.39368 -12.21170 -11.93755 -11.55997 -11.41344 -11.27358 -11.13536 -10.37742 -9.95661 -9.77278 -9.53532 -8.72657 -6.43602 -0.52687 0.42959 0.85483 1.35953 1.42991 1.50547 2.06045 2.16562 2.56713 2.74432 2.80586 3.37510 3.53332 3.84064 3.93738 3.99945 4.16666 4.23760 4.29444 4.42678 4.45269 4.46396 4.54180 4.68215 4.74939 4.77711 4.83235 4.87763 4.90575 4.92054 4.95687 4.99959 5.02126 5.07175 5.13593 5.18343 5.21249 5.25192 5.41384 5.42426 5.44877 5.57652 5.68566 5.90006 5.94230 6.10738 6.41442 6.53560 6.81240 6.86344 8.25528 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009448 B = 0.005389 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.798788 B = 5194.540151 C = 6855.714182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.987 5.987 3 C 0.118 3.882 4 C 0.027 3.973 5 O -0.374 6.374 6 C 0.103 3.897 7 C -0.171 4.171 8 C -0.130 4.130 9 C -0.172 4.172 10 S 2.704 3.296 11 O -0.988 6.988 12 O -0.991 6.991 13 C -0.635 4.635 14 C -0.147 4.147 15 C -0.123 4.123 16 C -0.138 4.138 17 C 0.072 3.928 18 C -0.493 4.493 19 H 0.080 0.920 20 C 0.038 3.962 21 N -0.826 5.826 22 Si 0.978 3.022 23 H -0.265 1.265 24 H -0.265 1.265 25 H -0.255 1.255 26 C -0.136 4.136 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.039 0.961 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.110 0.890 46 H 0.290 0.710 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.310 13.479 2.707 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.827 5.827 3 C -0.007 4.007 4 C -0.052 4.052 5 O -0.294 6.294 6 C 0.064 3.936 7 C -0.229 4.229 8 C -0.187 4.187 9 C -0.230 4.230 10 S 2.798 3.202 11 O -0.978 6.978 12 O -0.981 6.981 13 C -0.724 4.724 14 C -0.168 4.168 15 C -0.142 4.142 16 C -0.158 4.158 17 C 0.069 3.931 18 C -0.522 4.522 19 H 0.098 0.902 20 C -0.177 4.177 21 N -0.452 5.452 22 Si 0.798 3.202 23 H -0.190 1.190 24 H -0.190 1.190 25 H -0.179 1.179 26 C -0.157 4.157 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.139 0.861 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.128 0.872 46 H 0.101 0.899 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.211 12.804 3.433 15.593 hybrid contribution 1.045 -0.376 -1.731 2.056 sum -7.167 12.428 1.702 14.447 Atomic orbital electron populations 1.21662 0.76611 1.04136 1.02689 1.57111 1.16168 1.20009 1.89371 1.21690 0.98513 0.84988 0.95549 1.23199 0.86662 0.99977 0.95316 1.87873 1.28049 1.85397 1.28035 1.21610 0.97390 0.92521 0.82030 1.22352 1.00709 0.99251 1.00584 1.21719 0.93052 1.02182 1.01793 1.22373 0.99975 0.97199 1.03429 1.01277 0.72240 0.72728 0.73966 1.93476 1.66590 1.59950 1.77789 1.93473 1.41673 1.85004 1.77971 1.30279 1.04084 1.13489 1.24572 1.20375 0.98949 1.01911 0.95534 1.21080 0.97747 1.00337 0.95029 1.21582 0.93351 1.01107 0.99720 1.17929 0.92909 0.91261 0.91036 1.19801 1.09303 1.10595 1.12478 0.90198 1.26723 0.98243 0.94085 0.98685 1.69835 1.39073 1.08754 1.27502 0.85247 0.77888 0.79854 0.77166 1.18967 1.18974 1.17852 1.20700 0.96362 1.04285 0.94373 0.91097 0.88493 0.92107 0.86128 0.87765 0.90390 0.94318 0.93924 0.91134 0.93803 0.90870 0.90094 0.92775 0.92792 0.90737 0.90670 0.85795 0.86060 0.87170 0.89877 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.27 10.11 127.77 1.29 3.56 16 2 N -0.99 -28.84 3.17 -539.12 -1.71 -30.55 16 3 C 0.12 2.89 6.11 86.38 0.53 3.42 16 4 C 0.03 0.71 5.48 71.98 0.39 1.10 16 5 O -0.37 -9.62 8.36 -148.98 -1.25 -10.86 16 6 C 0.10 2.46 1.14 -10.79 -0.01 2.45 16 7 C -0.17 -5.14 8.25 71.98 0.59 -4.55 16 8 C -0.13 -2.51 8.84 71.98 0.64 -1.87 16 9 C -0.17 -3.36 8.25 71.98 0.59 -2.77 16 10 S 2.70 103.59 5.65 -56.49 -0.32 103.27 16 11 O -0.99 -40.74 16.35 -128.00 -2.09 -42.83 16 12 O -0.99 -41.75 15.82 -128.00 -2.02 -43.77 16 13 C -0.64 -27.99 5.97 22.22 0.13 -27.86 16 14 C -0.15 -6.39 9.53 22.46 0.21 -6.17 16 15 C -0.12 -5.53 10.02 22.22 0.22 -5.31 16 16 C -0.14 -6.95 8.70 22.73 0.20 -6.76 16 17 C 0.07 3.73 5.57 -21.29 -0.12 3.62 16 18 C -0.49 -25.43 9.05 23.46 0.21 -25.22 16 19 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 20 C 0.04 1.84 5.14 85.26 0.44 2.28 16 21 N -0.83 -41.84 10.97 21.83 0.24 -41.60 16 22 Si 0.98 36.70 29.59 68.60 2.03 38.73 16 23 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 24 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 25 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 26 C -0.14 -6.57 8.11 22.73 0.18 -6.38 16 27 H 0.07 1.43 8.14 -2.38 -0.02 1.42 16 28 H 0.10 2.09 6.67 -2.39 -0.02 2.08 16 29 H 0.06 1.56 7.79 -2.39 -0.02 1.54 16 30 H 0.12 2.18 8.11 -2.39 -0.02 2.16 16 31 H 0.10 2.60 6.91 -2.39 -0.02 2.59 16 32 H 0.08 1.73 6.42 -2.39 -0.02 1.72 16 33 H 0.04 1.28 5.23 -2.39 -0.01 1.27 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.04 1.51 6.54 -2.39 -0.02 1.49 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.05 1.12 6.54 -2.39 -0.02 1.11 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.12 4.82 7.61 -2.91 -0.02 4.80 16 44 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 45 H 0.11 5.75 6.18 -2.91 -0.02 5.73 16 46 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 47 H 0.11 5.03 7.60 -2.91 -0.02 5.01 16 Total: -1.00 -64.31 386.49 1.35 -62.96 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.96 Total: 35.11 kcal Atomic # 6 Polarization: -75.97 SS G_CDS: 5.51 Total: -70.46 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -1.47 Total: -72.15 kcal Atomic # 8 Polarization: -92.10 SS G_CDS: -5.36 Total: -97.46 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Atomic # 16 Polarization: 103.59 SS G_CDS: -0.32 Total: 103.27 kcal Total: -64.31 1.35 -62.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619491904.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.542 kcal (2) G-P(sol) polarization free energy of solvation -64.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds