Wall clock time and date at job start Sat Apr 11 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47067 * 2 1 4 4 C 1.53008 * 109.46725 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46999 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99839 * 275.00571 * 5 4 3 7 7 C 1.52999 * 109.46915 * 274.99745 * 6 5 4 8 8 C 1.53000 * 109.47084 * 179.97438 * 7 6 5 9 9 O 1.42900 * 109.47055 * 179.97438 * 8 7 6 10 10 S 1.65597 * 119.99873 * 95.00444 * 5 4 3 11 11 O 1.42098 * 106.40087 * 336.45828 * 10 5 4 12 12 O 1.42098 * 106.39917 * 203.54135 * 10 5 4 13 13 C 1.76200 * 107.21637 * 90.00140 * 10 5 4 14 14 C 1.38663 * 119.87357 * 270.24777 * 13 10 5 15 15 C 1.38609 * 120.49761 * 180.30197 * 14 13 10 16 16 C 1.37636 * 120.25144 * 359.45034 * 15 14 13 17 17 C 1.40702 * 119.74414 * 0.27080 * 16 15 14 18 18 C 1.41389 * 120.24759 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00485 * 204.39220 * 18 17 16 20 20 C 1.39942 * 119.99857 * 24.38333 * 18 17 16 21 21 N 1.30830 * 119.99921 * 17.87213 * 20 18 17 22 22 Si 1.86807 * 120.00314 * 197.86702 * 20 18 17 23 23 H 1.48500 * 109.46633 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46828 * 120.00062 * 22 20 18 25 25 H 1.48497 * 109.47200 * 240.00400 * 22 20 18 26 26 C 1.37598 * 119.87586 * 90.00318 * 13 10 5 27 27 H 1.09000 * 109.47133 * 59.99379 * 1 2 3 28 28 H 1.08997 * 109.47231 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46640 * 299.99571 * 1 2 3 30 30 H 1.09001 * 109.46640 * 240.00429 * 2 1 3 31 31 H 1.09000 * 109.47133 * 120.00621 * 2 1 3 32 32 H 1.09000 * 109.46628 * 60.01004 * 3 2 1 33 33 H 1.08994 * 109.47916 * 300.00674 * 3 2 1 34 34 H 1.09001 * 109.46692 * 60.00607 * 4 3 2 35 35 H 1.09000 * 109.47423 * 300.00589 * 4 3 2 36 36 H 1.08994 * 109.47136 * 34.99735 * 6 5 4 37 37 H 1.08997 * 109.47057 * 155.00020 * 6 5 4 38 38 H 1.08996 * 109.47302 * 300.00490 * 7 6 5 39 39 H 1.09005 * 109.46989 * 59.99966 * 7 6 5 40 40 H 1.08996 * 109.47502 * 300.00430 * 8 7 6 41 41 H 1.09002 * 109.46471 * 60.00263 * 8 7 6 42 42 H 0.96703 * 113.99920 * 180.02562 * 9 8 7 43 43 H 1.08001 * 119.74681 * 0.04757 * 14 13 10 44 44 H 1.08003 * 119.87315 * 179.72263 * 15 14 13 45 45 H 1.07999 * 120.13059 * 180.25214 * 16 15 14 46 46 H 0.97008 * 119.99884 * 179.97438 * 21 20 18 47 47 H 1.07997 * 120.12829 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0013 6 6 4.1989 3.5515 -1.2624 7 6 5.5560 3.2269 -1.8899 8 6 5.7024 3.9865 -3.2099 9 8 6.9702 3.6838 -3.7956 10 16 4.4519 3.5621 1.4303 11 8 3.7261 2.8831 2.4459 12 8 4.3455 4.9605 1.2018 13 6 6.1566 3.2358 1.7340 14 6 6.5271 2.1058 2.4471 15 6 7.8639 1.8398 2.6988 16 6 8.8400 2.6909 2.2327 17 6 8.4760 3.8375 1.5030 18 6 9.4699 4.7193 1.0196 19 1 9.2253 5.7525 0.8216 20 6 10.7707 4.2534 0.7977 21 7 10.9968 2.9690 0.6943 22 14 12.1844 5.4655 0.6490 23 1 11.6680 6.8494 0.8022 24 1 13.1856 5.1908 1.7109 25 1 12.8233 5.3198 -0.6835 26 6 7.1153 4.1006 1.2584 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6767 1.9564 -0.8898 34 1 3.9337 0.9285 -0.8892 35 1 3.9331 0.9286 0.8908 36 1 3.4026 3.2528 -1.9441 37 1 4.1328 4.6230 -1.0738 38 1 6.3523 3.5255 -1.2081 39 1 5.6221 2.1553 -2.0785 40 1 4.9061 3.6875 -3.8915 41 1 5.6361 5.0581 -3.0216 42 1 7.1318 4.1322 -4.6370 43 1 5.7681 1.4299 2.8126 44 1 8.1410 0.9590 3.2592 45 1 9.8813 2.4796 2.4264 46 1 11.8984 2.6460 0.5401 47 1 6.8247 4.9778 0.6995 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619494998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:34 Heat of formation + Delta-G solvation = -150.849574 kcal Electronic energy + Delta-G solvation = -28721.046217 eV Core-core repulsion = 24800.743744 eV Total energy + Delta-G solvation = -3920.302473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.46445 -38.77899 -38.40066 -37.58341 -36.92103 -35.68048 -35.43453 -32.64916 -31.91964 -31.59371 -29.47935 -27.35910 -26.15439 -24.14291 -23.64969 -22.82897 -22.48875 -21.82708 -20.23545 -19.46161 -18.69306 -18.17310 -17.77868 -17.25440 -16.93455 -16.54088 -16.33041 -16.15973 -15.87118 -15.27707 -15.14854 -14.94517 -14.57098 -14.34553 -14.26468 -13.85447 -13.84234 -13.71702 -13.35603 -13.30424 -13.13428 -13.09179 -13.05573 -13.00273 -12.81573 -12.63316 -12.26803 -12.21879 -12.09795 -11.97004 -11.87486 -11.73833 -11.56229 -11.38148 -11.30004 -11.15495 -10.81828 -10.09630 -9.79576 -9.56370 -8.73800 -6.45478 -0.54852 0.39885 0.83284 1.35525 1.42992 1.50952 2.00131 2.16771 2.54931 2.73377 3.29745 3.43115 3.51953 3.74159 4.01768 4.06034 4.18596 4.25708 4.28986 4.35101 4.40888 4.45054 4.49132 4.63327 4.66702 4.72394 4.74639 4.81599 4.83547 4.88699 4.97653 5.04999 5.06497 5.15591 5.18808 5.24064 5.33117 5.35064 5.40508 5.47369 5.53585 5.55285 5.69590 5.87451 5.92736 6.09480 6.51604 6.79056 6.84088 6.97942 8.24230 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.003788 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.889037 B = 7390.339511 C = 8428.695668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.137 4.137 4 C 0.116 3.884 5 N -0.987 5.987 6 C 0.122 3.878 7 C -0.151 4.151 8 C 0.080 3.920 9 O -0.601 6.601 10 S 2.706 3.294 11 O -0.980 6.980 12 O -0.991 6.991 13 C -0.640 4.640 14 C -0.151 4.151 15 C -0.123 4.123 16 C -0.143 4.143 17 C 0.065 3.935 18 C -0.495 4.495 19 H 0.076 0.924 20 C 0.038 3.962 21 N -0.820 5.820 22 Si 0.982 3.018 23 H -0.259 1.259 24 H -0.261 1.261 25 H -0.264 1.264 26 C -0.139 4.139 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.088 0.912 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.396 0.604 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.113 0.887 46 H 0.291 0.709 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.061 -3.938 -8.552 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.176 4.176 4 C -0.009 4.009 5 N -0.825 5.825 6 C -0.003 4.003 7 C -0.191 4.191 8 C 0.002 3.998 9 O -0.409 6.409 10 S 2.799 3.201 11 O -0.971 6.971 12 O -0.981 6.981 13 C -0.728 4.728 14 C -0.171 4.171 15 C -0.142 4.142 16 C -0.163 4.163 17 C 0.062 3.938 18 C -0.524 4.524 19 H 0.094 0.906 20 C -0.178 4.178 21 N -0.445 5.445 22 Si 0.802 3.198 23 H -0.183 1.183 24 H -0.186 1.186 25 H -0.188 1.188 26 C -0.160 4.160 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.106 0.894 38 H 0.060 0.940 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.070 0.930 42 H 0.245 0.755 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.131 0.869 46 H 0.102 0.898 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.415 -3.995 -7.553 15.905 hybrid contribution 1.781 0.529 -0.395 1.900 sum -11.633 -3.466 -7.948 14.509 Atomic orbital electron populations 1.21763 0.95170 1.02091 1.01857 1.21466 0.96499 0.95340 1.02720 1.22060 0.94306 0.98478 1.02788 1.21582 0.94900 0.80085 1.04283 1.57326 1.79200 1.24725 1.21227 1.21406 0.97216 0.96996 0.84689 1.22053 0.98184 1.01853 0.96999 1.22126 0.85459 0.98456 0.93798 1.86525 1.38055 1.73767 1.42554 1.01267 0.73426 0.72522 0.72839 1.93485 1.70997 1.75626 1.56945 1.93471 1.87129 1.31873 1.85657 1.30356 1.23503 1.05585 1.13377 1.20421 0.96461 0.96999 1.03267 1.21129 0.93153 0.99426 1.00452 1.21632 0.99014 0.96915 0.98720 1.18023 0.92291 0.93098 0.90419 1.19844 0.94754 0.97480 1.40366 0.90565 1.26740 1.02266 0.97471 0.91290 1.69829 1.24382 1.16130 1.34188 0.85163 0.76731 0.78814 0.79086 1.18299 1.18571 1.18815 1.20739 0.93066 0.99275 1.02897 0.92077 0.91908 0.93432 0.90427 0.92236 0.93037 0.89901 0.88068 0.90808 0.85661 0.89406 0.93997 0.90934 0.90138 0.92984 0.75473 0.85275 0.85617 0.86913 0.89782 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 71.98 0.71 -1.47 16 2 C -0.12 -1.98 5.93 30.60 0.18 -1.80 16 3 C -0.14 -2.72 5.54 30.60 0.17 -2.55 16 4 C 0.12 2.71 5.35 86.38 0.46 3.17 16 5 N -0.99 -28.38 2.78 -515.76 -1.44 -29.82 16 6 C 0.12 2.98 5.68 86.38 0.49 3.47 16 7 C -0.15 -4.39 5.91 30.59 0.18 -4.21 16 8 C 0.08 1.87 7.05 71.98 0.51 2.38 16 9 O -0.60 -16.92 13.66 -148.98 -2.04 -18.96 16 10 S 2.71 103.40 5.64 -56.49 -0.32 103.08 16 11 O -0.98 -39.21 16.24 -128.00 -2.08 -41.29 16 12 O -0.99 -41.99 15.82 -128.00 -2.02 -44.01 16 13 C -0.64 -28.87 5.97 22.22 0.13 -28.74 16 14 C -0.15 -6.64 9.53 22.46 0.21 -6.42 16 15 C -0.12 -5.64 10.02 22.22 0.22 -5.41 16 16 C -0.14 -7.49 8.70 22.73 0.20 -7.29 16 17 C 0.06 3.55 5.58 -21.29 -0.12 3.43 16 18 C -0.50 -26.97 9.05 23.46 0.21 -26.76 16 19 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 20 C 0.04 1.91 5.14 85.25 0.44 2.34 16 21 N -0.82 -42.20 10.95 21.83 0.24 -41.96 16 22 Si 0.98 38.08 29.60 68.60 2.03 40.11 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 24 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 25 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 26 C -0.14 -7.02 8.16 22.73 0.19 -6.84 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.91 8.11 -2.39 -0.02 1.89 16 35 H 0.07 1.87 7.61 -2.39 -0.02 1.85 16 36 H 0.13 1.96 8.11 -2.39 -0.02 1.94 16 37 H 0.09 2.28 6.91 -2.39 -0.02 2.26 16 38 H 0.04 1.61 7.00 -2.39 -0.02 1.59 16 39 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.40 6.74 9.12 -74.06 -0.68 6.07 16 43 H 0.13 4.96 7.61 -2.91 -0.02 4.94 16 44 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 45 H 0.11 6.05 6.15 -2.91 -0.02 6.03 16 46 H 0.29 13.44 8.30 -92.70 -0.77 12.67 16 47 H 0.11 5.23 7.60 -2.91 -0.02 5.21 16 Total: -1.00 -71.00 397.43 -1.15 -72.15 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: 0.28 Total: 37.41 kcal Atomic # 6 Polarization: -80.89 SS G_CDS: 4.19 Total: -76.70 kcal Atomic # 7 Polarization: -70.58 SS G_CDS: -1.20 Total: -71.78 kcal Atomic # 8 Polarization: -98.12 SS G_CDS: -6.14 Total: -104.26 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Atomic # 16 Polarization: 103.40 SS G_CDS: -0.32 Total: 103.08 kcal Total: -71.00 -1.15 -72.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.701 kcal (2) G-P(sol) polarization free energy of solvation -70.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds