Wall clock time and date at job start Sat Apr 11 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47268 * 2 1 4 4 O 1.42893 * 109.47394 * 59.75639 * 3 2 1 5 5 C 1.53001 * 109.46637 * 179.76011 * 3 2 1 6 6 C 1.53001 * 109.46913 * 300.73279 * 5 3 2 7 7 C 1.53001 * 109.46943 * 299.75324 * 3 2 1 8 8 C 1.52995 * 109.46961 * 184.99993 * 7 3 2 9 9 N 1.46502 * 109.47379 * 180.02562 * 8 7 3 10 10 S 1.65593 * 120.00452 * 165.00124 * 9 8 7 11 11 O 1.42101 * 106.40086 * 311.46600 * 10 9 8 12 12 O 1.42098 * 106.40396 * 178.54235 * 10 9 8 13 13 C 1.76208 * 107.21830 * 65.00041 * 10 9 8 14 14 C 1.38651 * 119.87425 * 270.25858 * 13 10 9 15 15 C 1.38619 * 120.50070 * 180.30329 * 14 13 10 16 16 C 1.37638 * 120.24084 * 359.43655 * 15 14 13 17 17 C 1.40698 * 119.74828 * 0.27964 * 16 15 14 18 18 C 1.41398 * 120.24024 * 179.97438 * 17 16 15 19 19 H 1.07997 * 119.99664 * 207.02749 * 18 17 16 20 20 C 1.39943 * 119.99988 * 27.03937 * 18 17 16 21 21 N 1.30819 * 120.00255 * 12.75844 * 20 18 17 22 22 Si 1.86802 * 119.99646 * 192.75824 * 20 18 17 23 23 H 1.48509 * 109.46807 * 94.98148 * 22 20 18 24 24 H 1.48497 * 109.47170 * 214.97941 * 22 20 18 25 25 H 1.48498 * 109.47615 * 334.98005 * 22 20 18 26 26 C 1.37589 * 119.87200 * 89.99944 * 13 10 9 27 27 H 1.09005 * 109.46909 * 57.41310 * 1 2 3 28 28 H 1.08995 * 109.47751 * 177.41331 * 1 2 3 29 29 H 1.09006 * 109.46940 * 297.41655 * 1 2 3 30 30 H 1.08999 * 109.46378 * 239.99690 * 2 1 3 31 31 H 1.08997 * 109.46706 * 120.00073 * 2 1 3 32 32 H 0.96699 * 114.00080 * 300.00036 * 4 3 2 33 33 H 1.08997 * 109.47384 * 60.73654 * 5 3 2 34 34 H 1.08998 * 109.46764 * 180.74052 * 5 3 2 35 35 H 1.08998 * 109.46860 * 186.86433 * 6 5 3 36 36 H 1.08992 * 109.47467 * 306.86793 * 6 5 3 37 37 H 1.09005 * 109.46555 * 66.86972 * 6 5 3 38 38 H 1.09005 * 109.46565 * 65.00626 * 7 3 2 39 39 H 1.08998 * 109.47518 * 305.00363 * 7 3 2 40 40 H 1.08997 * 109.46918 * 60.00578 * 8 7 3 41 41 H 1.08998 * 109.47307 * 300.00499 * 8 7 3 42 42 H 0.97002 * 119.99941 * 345.00243 * 9 8 7 43 43 H 1.08001 * 119.75714 * 0.03712 * 14 13 10 44 44 H 1.07995 * 119.87821 * 179.71601 * 15 14 13 45 45 H 1.08006 * 120.12428 * 180.25817 * 16 15 14 46 46 H 0.97004 * 120.00242 * 180.02562 * 21 20 18 47 47 H 1.08000 * 120.13203 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.5592 2.1178 1.1638 5 6 3.5701 1.4423 0.0060 6 6 4.0751 0.7068 1.2490 7 6 1.5352 2.1619 -1.2524 8 6 2.1455 3.5634 -1.3163 9 7 1.6616 4.2526 -2.5152 10 16 1.8486 5.8915 -2.6604 11 8 1.3905 6.4573 -1.4401 12 8 1.3161 6.2452 -3.9295 13 6 3.5792 6.2140 -2.7395 14 6 4.2941 6.4371 -1.5727 15 6 5.6547 6.6982 -1.6203 16 6 6.3131 6.7272 -2.8287 17 6 5.5988 6.4963 -4.0187 18 6 6.2647 6.5242 -5.2657 19 1 5.7213 6.7832 -6.1623 20 6 7.6278 6.2158 -5.3381 21 7 8.2291 5.6648 -4.3153 22 14 8.5888 6.5909 -6.8955 23 1 9.2567 7.9103 -6.7592 24 1 9.6130 5.5375 -7.1110 25 1 7.6607 6.6233 -8.0542 26 6 4.2167 6.2381 -3.9586 27 1 -0.3633 0.5535 -0.8659 28 1 -0.3634 -1.0265 -0.0464 29 1 -0.3633 0.4732 0.9123 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5949 2.1561 1.2261 33 1 3.9369 0.9387 -0.8883 34 1 3.9334 2.4699 0.0193 35 1 5.1578 0.8111 1.3180 36 1 3.6114 1.1346 2.1378 37 1 3.8157 -0.3495 1.1765 38 1 0.4486 2.2402 -1.2131 39 1 1.8270 1.5977 -2.1381 40 1 3.2319 3.4850 -1.3556 41 1 1.8536 4.1276 -0.4306 42 1 1.2316 3.7488 -3.2239 43 1 3.7865 6.4116 -0.6198 44 1 6.2009 6.8751 -0.7056 45 1 7.3740 6.9267 -2.8632 46 1 9.1740 5.4513 -4.3653 47 1 3.6586 6.0603 -4.8659 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619499148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:45 Heat of formation + Delta-G solvation = -132.759932 kcal Electronic energy + Delta-G solvation = -28300.741436 eV Core-core repulsion = 24381.223389 eV Total energy + Delta-G solvation = -3919.518047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.46351 -37.63997 -36.65328 -35.31869 -35.22948 -33.82038 -33.55339 -32.05867 -30.06282 -29.89780 -29.77677 -25.63347 -25.46966 -23.03956 -22.77532 -21.86588 -20.98275 -19.98868 -19.06093 -17.97797 -17.20510 -16.47651 -15.99295 -15.93446 -15.42016 -15.16789 -14.96299 -14.82023 -14.54501 -14.42575 -13.84214 -13.76736 -13.44458 -13.31674 -12.76883 -12.56926 -12.48507 -12.20527 -12.04044 -11.91551 -11.75681 -11.59995 -11.55715 -11.41591 -11.38260 -11.35701 -11.31789 -11.20569 -10.97479 -10.89014 -10.86360 -10.59098 -10.41381 -9.88719 -9.75864 -9.63020 -9.39311 -9.09333 -8.02972 -7.67260 -6.88203 -4.54664 1.05380 2.20065 2.63026 3.00540 3.04688 3.06570 3.57794 3.83989 4.08474 4.26242 4.45119 4.50724 4.54359 4.66029 4.91349 4.97853 5.04137 5.16406 5.24294 5.33858 5.36008 5.41104 5.54984 5.57846 5.67883 5.70777 5.78313 5.83805 5.89754 6.01029 6.05441 6.12505 6.17716 6.19116 6.22566 6.32638 6.65695 6.77262 6.84853 7.05183 7.20558 7.25305 7.38348 7.55134 7.73102 7.82509 7.95143 8.41440 8.68349 8.72518 10.06627 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012006 B = 0.003272 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.597533 B = 8554.468372 C = 9658.933066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.150 4.150 3 C 0.137 3.863 4 O -0.553 6.553 5 C -0.119 4.119 6 C -0.149 4.149 7 C -0.153 4.153 8 C 0.119 3.881 9 N -1.123 6.123 10 S 2.690 3.310 11 O -0.975 6.975 12 O -0.975 6.975 13 C -0.634 4.634 14 C -0.144 4.144 15 C -0.123 4.123 16 C -0.113 4.113 17 C 0.090 3.910 18 C -0.461 4.461 19 H 0.082 0.918 20 C 0.073 3.927 21 N -0.801 5.801 22 Si 0.914 3.086 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.121 4.121 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.372 0.628 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.412 0.588 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.127 0.873 46 H 0.282 0.718 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.779 -11.661 7.212 16.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.188 4.188 3 C 0.096 3.904 4 O -0.359 6.359 5 C -0.156 4.156 6 C -0.206 4.206 7 C -0.192 4.192 8 C -0.007 4.007 9 N -0.881 5.881 10 S 2.785 3.215 11 O -0.965 6.965 12 O -0.965 6.965 13 C -0.726 4.726 14 C -0.165 4.165 15 C -0.143 4.143 16 C -0.132 4.132 17 C 0.087 3.913 18 C -0.491 4.491 19 H 0.100 0.900 20 C -0.144 4.144 21 N -0.427 5.427 22 Si 0.738 3.262 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.142 4.142 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.220 0.780 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.245 0.755 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.145 0.855 46 H 0.093 0.907 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.531 -10.988 7.516 15.812 hybrid contribution 0.595 -0.454 -1.180 1.398 sum -7.936 -11.442 6.335 15.298 Atomic orbital electron populations 1.21885 0.95841 1.02165 1.01983 1.22242 0.96238 0.97162 1.03157 1.21178 0.94734 0.90138 0.84346 1.86573 1.26371 1.79212 1.43793 1.21641 0.92123 1.02646 0.99184 1.21741 1.00742 0.99681 0.98477 1.22519 1.01383 0.96080 0.99237 1.21304 0.99156 0.93178 0.87038 1.55578 1.75786 1.28150 1.28541 1.01615 0.75055 0.71863 0.72927 1.93512 1.80514 1.75772 1.46703 1.93533 1.79008 1.81449 1.42532 1.29742 1.22843 1.19629 1.00397 1.20124 0.94574 1.07020 0.94762 1.20837 0.94031 1.02042 0.97341 1.21707 1.00510 0.99440 0.91583 1.17701 0.90680 0.89219 0.93741 1.19628 0.93786 1.41141 0.94517 0.89999 1.25912 0.98022 0.92284 0.98182 1.69749 1.12176 1.29675 1.31104 0.86197 0.79360 0.78998 0.81619 1.19301 1.20192 1.18450 1.20813 0.95923 1.03504 0.94003 0.92147 0.92461 0.92530 0.91043 0.90726 0.77977 0.90560 0.90226 0.92830 0.91764 0.93115 0.90669 0.90268 0.91030 0.89821 0.75537 0.87546 0.88338 0.85501 0.90699 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.26 37.16 0.34 -0.69 16 2 C -0.15 -1.14 4.84 -26.73 -0.13 -1.27 16 3 C 0.14 1.29 0.52 -90.62 -0.05 1.24 16 4 O -0.55 -5.61 11.72 -35.23 -0.41 -6.02 16 5 C -0.12 -1.25 4.69 -26.73 -0.13 -1.38 16 6 C -0.15 -1.47 9.28 37.16 0.34 -1.12 16 7 C -0.15 -1.49 4.13 -26.73 -0.11 -1.60 16 8 C 0.12 1.57 5.63 -4.04 -0.02 1.54 16 9 N -1.12 -16.06 6.00 -10.62 -0.06 -16.13 16 10 S 2.69 50.58 5.73 -107.50 -0.62 49.96 16 11 O -0.97 -20.02 16.74 -57.17 -0.96 -20.98 16 12 O -0.97 -20.51 17.26 -57.17 -0.99 -21.50 16 13 C -0.63 -13.85 5.94 -39.67 -0.24 -14.08 16 14 C -0.14 -3.12 9.53 -39.29 -0.37 -3.49 16 15 C -0.12 -2.76 10.02 -39.66 -0.40 -3.16 16 16 C -0.11 -2.80 8.67 -38.87 -0.34 -3.13 16 17 C 0.09 2.32 5.56 -106.82 -0.59 1.73 16 18 C -0.46 -11.83 9.07 -37.74 -0.34 -12.17 16 19 H 0.08 2.03 7.88 -52.49 -0.41 1.62 16 20 C 0.07 1.76 5.23 -17.34 -0.09 1.67 16 21 N -0.80 -19.74 10.83 55.55 0.60 -19.14 16 22 Si 0.91 18.12 29.58 -169.99 -5.03 13.10 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 26 C -0.12 -2.91 9.26 -38.88 -0.36 -3.27 16 27 H 0.06 0.38 6.41 -51.93 -0.33 0.05 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.33 6.91 -51.93 -0.36 -0.03 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.58 6.56 -51.93 -0.34 0.24 16 32 H 0.37 2.70 7.39 45.56 0.34 3.03 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.97 6.39 -51.93 -0.33 0.64 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.68 7.51 -51.93 -0.39 0.29 16 37 H 0.05 0.43 6.80 -51.93 -0.35 0.08 16 38 H 0.07 0.64 6.65 -51.93 -0.35 0.29 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.00 6.36 -51.93 -0.33 0.67 16 41 H 0.08 1.17 7.43 -51.93 -0.39 0.78 16 42 H 0.41 4.85 8.65 -34.46 -0.30 4.56 16 43 H 0.11 2.10 7.61 -52.49 -0.40 1.70 16 44 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 45 H 0.13 3.21 6.16 -52.48 -0.32 2.89 16 46 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 47 H 0.11 2.56 7.60 -52.49 -0.40 2.17 16 LS Contribution 384.19 15.07 5.79 5.79 Total: -1.00 -30.99 384.19 -10.49 -41.48 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -6.34 Total: 12.61 kcal Atomic # 6 Polarization: -36.69 SS G_CDS: -2.48 Total: -39.17 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.54 Total: -35.26 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -2.36 Total: -48.50 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 16 Polarization: 50.58 SS G_CDS: -0.62 Total: 49.96 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.99 -10.49 -41.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.280 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds