Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 113.99977 * 2 1 4 4 H 1.09003 * 109.47221 * 19.02340 * 3 2 1 5 5 C 1.52998 * 109.47373 * 259.02791 * 3 2 1 6 6 N 1.46499 * 109.47317 * 65.10679 * 5 3 2 7 7 S 1.65595 * 119.99882 * 94.61788 * 6 5 3 8 8 O 1.42105 * 106.40229 * 176.42158 * 7 6 5 9 9 O 1.42098 * 106.40231 * 309.33895 * 7 6 5 10 10 C 1.76203 * 107.22243 * 62.87815 * 7 6 5 11 11 C 1.37632 * 120.13015 * 245.52064 * 10 7 6 12 12 C 1.38612 * 120.24965 * 179.97438 * 11 10 7 13 13 C 1.38658 * 120.49905 * 0.02562 * 12 11 10 14 14 C 1.37593 * 120.25237 * 0.02562 * 13 12 11 15 15 C 1.40699 * 120.12399 * 65.24120 * 10 7 6 16 16 C 1.41397 * 120.24602 * 0.02562 * 15 10 7 17 17 H 1.08002 * 119.99889 * 331.49887 * 16 15 10 18 18 C 1.39942 * 120.00285 * 151.50019 * 16 15 10 19 19 N 1.30825 * 120.00025 * 346.05164 * 18 16 15 20 20 Si 1.86801 * 120.00168 * 166.05224 * 18 16 15 21 21 H 1.48498 * 109.47285 * 65.00153 * 20 18 16 22 22 H 1.48506 * 109.46986 * 185.00092 * 20 18 16 23 23 H 1.48503 * 109.46864 * 304.99764 * 20 18 16 24 24 C 1.52999 * 109.47330 * 139.02219 * 3 2 1 25 25 C 1.52999 * 109.47443 * 182.42217 * 24 3 2 26 26 C 1.53006 * 109.46929 * 302.42607 * 24 3 2 27 27 C 1.53000 * 109.46921 * 62.42055 * 24 3 2 28 28 H 1.08996 * 109.46961 * 185.17029 * 1 2 3 29 29 H 1.08998 * 109.46863 * 305.17162 * 1 2 3 30 30 H 1.09000 * 109.46636 * 65.17146 * 1 2 3 31 31 H 1.08996 * 109.47382 * 185.11000 * 5 3 2 32 32 H 1.09006 * 109.46585 * 305.10565 * 5 3 2 33 33 H 0.97000 * 119.99923 * 274.61297 * 6 5 3 34 34 H 1.08007 * 119.87563 * 359.97438 * 11 10 7 35 35 H 1.07999 * 119.75256 * 179.97438 * 12 11 10 36 36 H 1.08000 * 119.87428 * 180.02562 * 13 12 11 37 37 H 1.07999 * 120.13272 * 179.97438 * 14 13 12 38 38 H 0.96995 * 120.00414 * 179.97438 * 19 18 16 39 39 H 1.09004 * 109.46559 * 54.79136 * 25 24 3 40 40 H 1.08997 * 109.46980 * 174.78941 * 25 24 3 41 41 H 1.08997 * 109.47030 * 294.79742 * 25 24 3 42 42 H 1.09001 * 109.46965 * 59.99866 * 26 24 3 43 43 H 1.09000 * 109.46673 * 179.97438 * 26 24 3 44 44 H 1.08996 * 109.46820 * 299.99644 * 26 24 3 45 45 H 1.09005 * 109.46618 * 60.00394 * 27 24 3 46 46 H 1.09000 * 109.47388 * 179.97438 * 27 24 3 47 47 H 1.09001 * 109.47642 * 300.00544 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2705 2.0326 0.3350 5 6 2.4686 1.6597 -1.4161 6 7 1.3020 1.7574 -2.2968 7 16 0.5943 3.2287 -2.5736 8 8 -0.4411 3.0042 -3.5206 9 8 0.3674 3.8112 -1.2975 10 6 1.7922 4.2410 -3.3767 11 6 2.2877 5.3587 -2.7446 12 6 3.2305 6.1565 -3.3738 13 6 3.6848 5.8397 -4.6450 14 6 3.2026 4.7277 -5.2963 15 6 2.2503 3.9065 -4.6643 16 6 1.7524 2.7577 -5.3213 17 1 1.4108 1.9111 -4.7442 18 6 1.7022 2.7176 -6.7192 19 7 1.8513 3.8180 -7.4109 20 14 1.4223 1.0930 -7.5976 21 1 0.0681 0.5795 -7.2692 22 1 1.5316 1.2980 -9.0644 23 1 2.4447 0.1099 -7.1577 24 6 3.2126 1.3285 0.9459 25 6 3.7982 2.7412 0.9923 26 6 2.7651 0.9155 2.3496 27 6 4.2768 0.3515 0.4419 28 1 -0.3633 -1.0235 0.0926 29 1 -0.3633 0.5920 0.8400 30 1 -0.3632 0.4315 -0.9327 31 1 2.9926 2.6153 -1.4000 32 1 3.1390 0.8838 -1.7857 33 1 0.9442 0.9601 -2.7180 34 1 1.9406 5.6151 -1.7544 35 1 3.6136 7.0319 -2.8705 36 1 4.4199 6.4681 -5.1257 37 1 3.5575 4.4830 -6.2865 38 1 1.8170 3.7902 -8.3799 39 1 3.0155 3.4502 1.2622 40 1 4.5953 2.7799 1.7347 41 1 4.2008 2.9999 0.0129 42 1 2.3480 -0.0910 2.3165 43 1 3.6218 0.9315 3.0234 44 1 2.0070 1.6114 2.7086 45 1 4.5955 0.6457 -0.5581 46 1 5.1336 0.3682 1.1155 47 1 3.8597 -0.6550 0.4088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619572702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = -119.868015 kcal Electronic energy + Delta-G solvation = -29820.297087 eV Core-core repulsion = 25901.338075 eV Total energy + Delta-G solvation = -3918.959011 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.24198 -37.61895 -36.23443 -35.72386 -34.85603 -34.25376 -33.87131 -30.25684 -29.60253 -28.37793 -27.30925 -27.13016 -25.76401 -25.54297 -22.70528 -21.69169 -21.16297 -18.80567 -18.71160 -17.72911 -17.10330 -16.50065 -16.07294 -15.92430 -15.41798 -15.32749 -14.73269 -14.34640 -14.15576 -13.83240 -13.56231 -13.43693 -13.29340 -13.16699 -12.79802 -12.72941 -12.27235 -11.96157 -11.90209 -11.86794 -11.57261 -11.50090 -11.38202 -11.30389 -11.17581 -11.10117 -11.04911 -10.91974 -10.79580 -10.71145 -10.63367 -10.55717 -10.30922 -9.99048 -9.92967 -9.43674 -9.29360 -8.55695 -8.06577 -7.64220 -7.06953 -4.78324 1.51275 2.31490 2.71542 2.94882 2.98073 3.10680 3.75670 3.87590 3.91429 4.37806 4.67201 4.82591 4.86314 5.04207 5.24799 5.33920 5.38377 5.46984 5.51327 5.56329 5.63365 5.69485 5.71275 5.75177 5.81557 5.88483 5.97598 5.99834 6.01528 6.11677 6.15857 6.20501 6.21183 6.35602 6.39572 6.46135 6.50011 6.75180 6.91539 7.05673 7.27813 7.35258 7.45988 7.52792 7.64465 7.78055 7.86541 8.25670 8.47087 8.61895 9.86821 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.004768 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.841573 B = 5871.198828 C = 6700.609696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.074 3.926 4 H 0.078 0.922 5 C 0.111 3.889 6 N -1.119 6.119 7 S 2.695 3.305 8 O -0.966 6.966 9 O -0.998 6.998 10 C -0.777 4.777 11 C -0.003 4.003 12 C -0.250 4.250 13 C -0.076 4.076 14 C -0.158 4.158 15 C 0.187 3.813 16 C -0.445 4.445 17 H 0.087 0.913 18 C 0.081 3.919 19 N -0.773 5.773 20 Si 0.913 3.087 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.067 4.067 25 C -0.150 4.150 26 C -0.137 4.137 27 C -0.141 4.141 28 H 0.080 0.920 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.412 0.588 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.289 0.711 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.050 0.950 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 -6.394 10.393 12.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C 0.014 3.986 4 H 0.096 0.904 5 C -0.017 4.017 6 N -0.875 5.875 7 S 2.792 3.208 8 O -0.956 6.956 9 O -0.988 6.988 10 C -0.873 4.873 11 C -0.023 4.023 12 C -0.271 4.271 13 C -0.095 4.095 14 C -0.178 4.178 15 C 0.182 3.818 16 C -0.473 4.473 17 H 0.105 0.895 18 C -0.140 4.140 19 N -0.396 5.396 20 Si 0.736 3.264 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.068 4.068 25 C -0.207 4.207 26 C -0.194 4.194 27 C -0.198 4.198 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.245 0.755 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.792 -6.107 10.475 12.442 hybrid contribution 0.208 -0.388 -1.105 1.190 sum 3.000 -6.495 9.369 11.788 Atomic orbital electron populations 1.22825 0.81582 1.01967 1.00322 1.87812 1.19102 1.27606 1.95016 1.22852 0.95397 0.85318 0.95010 0.90387 1.21698 0.87941 1.03315 0.88747 1.55628 1.44626 1.26204 1.60995 1.01275 0.74185 0.72479 0.72836 1.93547 1.54741 1.84735 1.62581 1.93442 1.85387 1.77490 1.42499 1.29815 1.29948 1.16198 1.11305 1.20249 0.93005 0.92164 0.96890 1.20480 1.06002 1.02963 0.97639 1.20893 0.97786 0.96352 0.94467 1.21463 0.99081 0.96738 1.00470 1.16985 0.86453 0.90401 0.87924 1.19824 1.34406 1.01075 0.92034 0.89491 1.25950 0.91833 0.98410 0.97845 1.69778 1.32247 1.28404 1.09198 0.86249 0.80743 0.81328 0.78080 1.18137 1.19864 1.18222 1.20660 0.94699 0.96222 0.95196 1.21989 1.01037 0.95198 1.02458 1.21796 1.00802 1.01769 0.95074 1.21879 0.97482 0.99478 1.00945 0.90106 0.94163 0.94006 0.89390 0.89652 0.75525 0.87454 0.88733 0.88810 0.85960 0.90019 0.91988 0.92274 0.91818 0.92000 0.92868 0.93014 0.92238 0.93075 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.71 101.05 1.08 1.45 16 2 O -0.38 -5.15 8.95 -35.23 -0.32 -5.46 16 3 C 0.07 1.04 1.71 -26.73 -0.05 0.99 16 4 H 0.08 1.21 7.01 -51.93 -0.36 0.85 16 5 C 0.11 1.69 5.12 -4.04 -0.02 1.66 16 6 N -1.12 -19.44 3.95 -10.61 -0.04 -19.48 16 7 S 2.70 58.17 4.88 -107.50 -0.52 57.64 16 8 O -0.97 -24.02 16.55 -57.17 -0.95 -24.96 16 9 O -1.00 -21.83 16.18 -57.17 -0.92 -22.75 16 10 C -0.78 -18.31 5.65 -38.87 -0.22 -18.53 16 11 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 12 C -0.25 -5.37 10.05 -39.29 -0.39 -5.76 16 13 C -0.08 -1.68 10.02 -39.66 -0.40 -2.08 16 14 C -0.16 -3.85 8.66 -38.87 -0.34 -4.18 16 15 C 0.19 4.71 5.54 -106.82 -0.59 4.11 16 16 C -0.45 -11.07 7.63 -37.74 -0.29 -11.35 16 17 H 0.09 2.02 5.82 -52.49 -0.31 1.71 16 18 C 0.08 1.94 5.19 -17.34 -0.09 1.85 16 19 N -0.77 -18.90 10.98 55.55 0.61 -18.29 16 20 Si 0.91 17.81 29.58 -169.99 -5.03 12.79 16 21 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 24 C -0.07 -0.79 0.63 -154.51 -0.10 -0.89 16 25 C -0.15 -1.74 8.04 37.16 0.30 -1.44 16 26 C -0.14 -1.47 8.30 37.16 0.31 -1.16 16 27 C -0.14 -1.54 7.94 37.16 0.29 -1.25 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.48 8.00 -51.93 -0.42 0.06 16 30 H 0.04 0.55 7.04 -51.93 -0.37 0.19 16 31 H 0.09 1.38 5.96 -51.93 -0.31 1.07 16 32 H 0.09 1.18 6.68 -51.93 -0.35 0.84 16 33 H 0.41 6.52 8.50 -34.47 -0.29 6.23 16 34 H 0.11 2.19 7.32 -52.48 -0.38 1.81 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.12 3.01 6.30 -52.49 -0.33 2.67 16 38 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.77 6.65 -51.93 -0.35 0.42 16 42 H 0.06 0.68 7.62 -51.93 -0.40 0.28 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.66 6.50 -51.93 -0.34 0.32 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.71 7.75 -51.93 -0.40 0.31 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -29.60 381.52 -9.41 -39.01 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -7.11 Total: 12.79 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: -0.88 Total: -37.03 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.57 Total: -37.77 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -2.19 Total: -53.18 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: 58.17 SS G_CDS: -0.52 Total: 57.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.60 -9.41 -39.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.857 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds