Wall clock time and date at job start Sat Apr 11 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 113.99977 * 2 1 4 4 H 1.09003 * 109.47221 * 19.02340 * 3 2 1 5 5 C 1.52998 * 109.47373 * 259.02791 * 3 2 1 6 6 N 1.46499 * 109.47317 * 65.10679 * 5 3 2 7 7 S 1.65595 * 119.99882 * 94.61788 * 6 5 3 8 8 O 1.42105 * 106.40229 * 176.42158 * 7 6 5 9 9 O 1.42098 * 106.40231 * 309.33895 * 7 6 5 10 10 C 1.76203 * 107.22243 * 62.87815 * 7 6 5 11 11 C 1.37632 * 120.13015 * 245.52064 * 10 7 6 12 12 C 1.38612 * 120.24965 * 179.97438 * 11 10 7 13 13 C 1.38658 * 120.49905 * 0.02562 * 12 11 10 14 14 C 1.37593 * 120.25237 * 0.02562 * 13 12 11 15 15 C 1.40699 * 120.12399 * 65.24120 * 10 7 6 16 16 C 1.41397 * 120.24602 * 0.02562 * 15 10 7 17 17 H 1.08002 * 119.99889 * 331.49887 * 16 15 10 18 18 C 1.39942 * 120.00285 * 151.50019 * 16 15 10 19 19 N 1.30825 * 120.00025 * 346.05164 * 18 16 15 20 20 Si 1.86801 * 120.00168 * 166.05224 * 18 16 15 21 21 H 1.48498 * 109.47285 * 65.00153 * 20 18 16 22 22 H 1.48506 * 109.46986 * 185.00092 * 20 18 16 23 23 H 1.48503 * 109.46864 * 304.99764 * 20 18 16 24 24 C 1.52999 * 109.47330 * 139.02219 * 3 2 1 25 25 C 1.52999 * 109.47443 * 182.42217 * 24 3 2 26 26 C 1.53006 * 109.46929 * 302.42607 * 24 3 2 27 27 C 1.53000 * 109.46921 * 62.42055 * 24 3 2 28 28 H 1.08996 * 109.46961 * 185.17029 * 1 2 3 29 29 H 1.08998 * 109.46863 * 305.17162 * 1 2 3 30 30 H 1.09000 * 109.46636 * 65.17146 * 1 2 3 31 31 H 1.08996 * 109.47382 * 185.11000 * 5 3 2 32 32 H 1.09006 * 109.46585 * 305.10565 * 5 3 2 33 33 H 0.97000 * 119.99923 * 274.61297 * 6 5 3 34 34 H 1.08007 * 119.87563 * 359.97438 * 11 10 7 35 35 H 1.07999 * 119.75256 * 179.97438 * 12 11 10 36 36 H 1.08000 * 119.87428 * 180.02562 * 13 12 11 37 37 H 1.07999 * 120.13272 * 179.97438 * 14 13 12 38 38 H 0.96995 * 120.00414 * 179.97438 * 19 18 16 39 39 H 1.09004 * 109.46559 * 54.79136 * 25 24 3 40 40 H 1.08997 * 109.46980 * 174.78941 * 25 24 3 41 41 H 1.08997 * 109.47030 * 294.79742 * 25 24 3 42 42 H 1.09001 * 109.46965 * 59.99866 * 26 24 3 43 43 H 1.09000 * 109.46673 * 179.97438 * 26 24 3 44 44 H 1.08996 * 109.46820 * 299.99644 * 26 24 3 45 45 H 1.09005 * 109.46618 * 60.00394 * 27 24 3 46 46 H 1.09000 * 109.47388 * 179.97438 * 27 24 3 47 47 H 1.09001 * 109.47642 * 300.00544 * 27 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2705 2.0326 0.3350 5 6 2.4686 1.6597 -1.4161 6 7 1.3020 1.7574 -2.2968 7 16 0.5943 3.2287 -2.5736 8 8 -0.4411 3.0042 -3.5206 9 8 0.3674 3.8112 -1.2975 10 6 1.7922 4.2410 -3.3767 11 6 2.2877 5.3587 -2.7446 12 6 3.2305 6.1565 -3.3738 13 6 3.6848 5.8397 -4.6450 14 6 3.2026 4.7277 -5.2963 15 6 2.2503 3.9065 -4.6643 16 6 1.7524 2.7577 -5.3213 17 1 1.4108 1.9111 -4.7442 18 6 1.7022 2.7176 -6.7192 19 7 1.8513 3.8180 -7.4109 20 14 1.4223 1.0930 -7.5976 21 1 0.0681 0.5795 -7.2692 22 1 1.5316 1.2980 -9.0644 23 1 2.4447 0.1099 -7.1577 24 6 3.2126 1.3285 0.9459 25 6 3.7982 2.7412 0.9923 26 6 2.7651 0.9155 2.3496 27 6 4.2768 0.3515 0.4419 28 1 -0.3633 -1.0235 0.0926 29 1 -0.3633 0.5920 0.8400 30 1 -0.3632 0.4315 -0.9327 31 1 2.9926 2.6153 -1.4000 32 1 3.1390 0.8838 -1.7857 33 1 0.9442 0.9601 -2.7180 34 1 1.9406 5.6151 -1.7544 35 1 3.6136 7.0319 -2.8705 36 1 4.4199 6.4681 -5.1257 37 1 3.5575 4.4830 -6.2865 38 1 1.8170 3.7902 -8.3799 39 1 3.0155 3.4502 1.2622 40 1 4.5953 2.7799 1.7347 41 1 4.2008 2.9999 0.0129 42 1 2.3480 -0.0910 2.3165 43 1 3.6218 0.9315 3.0234 44 1 2.0070 1.6114 2.7086 45 1 4.5955 0.6457 -0.5581 46 1 5.1336 0.3682 1.1155 47 1 3.8597 -0.6550 0.4088 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619572702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:07 Heat of formation + Delta-G solvation = -138.317383 kcal Electronic energy + Delta-G solvation = -29821.097112 eV Core-core repulsion = 25901.338075 eV Total energy + Delta-G solvation = -3919.759036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.30767 -39.38567 -38.03042 -36.71734 -36.67214 -35.76464 -35.48510 -32.03523 -31.37878 -29.51530 -28.22890 -28.00875 -27.36352 -26.79286 -23.87492 -23.45378 -22.93761 -20.34833 -19.77943 -19.50543 -18.70494 -18.08255 -17.43717 -17.16838 -17.07150 -16.52579 -16.21199 -15.99953 -15.46634 -15.11650 -14.93670 -14.80960 -14.49213 -14.46778 -14.37233 -13.92192 -13.70849 -13.31285 -13.24778 -13.05603 -13.00195 -12.95788 -12.86821 -12.82854 -12.78156 -12.59262 -12.47521 -12.38150 -12.17312 -11.99582 -11.76476 -11.66847 -11.64176 -11.42308 -11.20308 -11.16504 -10.92379 -9.86137 -9.83253 -9.44794 -8.82022 -6.62022 -0.18607 0.52537 0.97193 1.35839 1.47040 1.52080 2.14968 2.32009 2.62041 2.84088 2.95547 3.45586 3.76003 3.88079 3.89041 4.09076 4.11831 4.32890 4.34691 4.44534 4.49786 4.52128 4.59209 4.61405 4.71419 4.81311 4.85829 4.87815 4.90951 4.97244 5.01977 5.04867 5.13282 5.13850 5.15384 5.25665 5.29405 5.39492 5.51194 5.55469 5.58039 5.70129 5.80795 6.00102 6.07307 6.16265 6.29921 6.46395 6.66211 6.82456 8.14811 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.004768 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.841573 B = 5871.198828 C = 6700.609696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.379 6.379 3 C 0.077 3.923 4 H 0.060 0.940 5 C 0.104 3.896 6 N -1.108 6.108 7 S 2.714 3.286 8 O -1.003 7.003 9 O -1.003 7.003 10 C -0.794 4.794 11 C -0.015 4.015 12 C -0.249 4.249 13 C -0.074 4.074 14 C -0.186 4.186 15 C 0.163 3.837 16 C -0.476 4.476 17 H 0.092 0.908 18 C 0.040 3.960 19 N -0.805 5.805 20 Si 0.974 3.026 21 H -0.263 1.263 22 H -0.261 1.261 23 H -0.245 1.245 24 C -0.066 4.066 25 C -0.151 4.151 26 C -0.134 4.134 27 C -0.138 4.138 28 H 0.105 0.895 29 H 0.043 0.957 30 H 0.029 0.971 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.419 0.581 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.296 0.704 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.584 -7.245 11.465 14.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.297 6.297 3 C 0.017 3.983 4 H 0.078 0.922 5 C -0.022 4.022 6 N -0.867 5.867 7 S 2.810 3.190 8 O -0.993 6.993 9 O -0.993 6.993 10 C -0.888 4.888 11 C -0.035 4.035 12 C -0.269 4.269 13 C -0.093 4.093 14 C -0.206 4.206 15 C 0.158 3.842 16 C -0.504 4.504 17 H 0.110 0.890 18 C -0.178 4.178 19 N -0.429 5.429 20 Si 0.793 3.207 21 H -0.187 1.187 22 H -0.185 1.185 23 H -0.168 1.168 24 C -0.067 4.067 25 C -0.208 4.208 26 C -0.191 4.191 27 C -0.195 4.195 28 H 0.124 0.876 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.254 0.746 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.889 -6.940 11.549 14.024 hybrid contribution -0.110 -0.044 -1.330 1.336 sum 3.778 -6.984 10.218 12.941 Atomic orbital electron populations 1.22986 0.81016 1.03597 0.99825 1.87809 1.19751 1.27204 1.94968 1.22795 0.95933 0.85108 0.94435 0.92218 1.21949 0.87279 1.03699 0.89298 1.55250 1.45210 1.24895 1.61307 1.00580 0.73442 0.72895 0.72070 1.93490 1.56507 1.85484 1.63828 1.93426 1.85464 1.78174 1.42286 1.30111 1.30035 1.17311 1.11351 1.20572 0.93278 0.91945 0.97660 1.20889 1.05147 1.03534 0.97341 1.21246 0.97672 0.95687 0.94677 1.21523 1.00156 0.98253 1.00652 1.17296 0.87029 0.91064 0.88768 1.20116 1.35702 1.01555 0.93047 0.88987 1.26798 0.91252 1.01591 0.98194 1.69817 1.33144 1.30126 1.09822 0.85360 0.80429 0.77387 0.77535 1.18713 1.18531 1.16818 1.20689 0.93991 0.96697 0.95362 1.22008 1.01302 0.94787 1.02681 1.21767 1.01397 1.01405 0.94512 1.21853 0.97671 0.98836 1.01125 0.87623 0.93811 0.95266 0.89865 0.88099 0.74550 0.85921 0.85398 0.85932 0.87012 0.89307 0.93024 0.90237 0.92549 0.92232 0.91126 0.93415 0.92642 0.91384 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.71 113.37 1.21 1.75 16 2 O -0.38 -9.88 8.95 -148.98 -1.33 -11.21 16 3 C 0.08 2.10 1.71 30.59 0.05 2.15 16 4 H 0.06 1.85 7.01 -2.39 -0.02 1.83 16 5 C 0.10 3.13 5.12 86.38 0.44 3.57 16 6 N -1.11 -38.53 3.95 -187.49 -0.74 -39.27 16 7 S 2.71 118.50 4.88 -56.49 -0.28 118.22 16 8 O -1.00 -51.00 16.55 -128.00 -2.12 -53.12 16 9 O -1.00 -44.01 16.18 -128.00 -2.07 -46.08 16 10 C -0.79 -37.74 5.65 22.73 0.13 -37.61 16 11 C -0.01 -0.65 9.53 22.22 0.21 -0.44 16 12 C -0.25 -10.26 10.05 22.46 0.23 -10.03 16 13 C -0.07 -3.20 10.02 22.22 0.22 -2.98 16 14 C -0.19 -9.19 8.66 22.73 0.20 -9.00 16 15 C 0.16 8.35 5.54 -21.29 -0.12 8.23 16 16 C -0.48 -24.14 7.63 23.46 0.18 -23.96 16 17 H 0.09 4.36 5.82 -2.91 -0.02 4.34 16 18 C 0.04 1.94 5.19 85.26 0.44 2.38 16 19 N -0.81 -40.14 10.98 21.83 0.24 -39.90 16 20 Si 0.97 36.42 29.58 68.60 2.03 38.45 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 23 H -0.24 -8.54 7.11 99.48 0.71 -7.83 16 24 C -0.07 -1.47 0.63 -52.18 -0.03 -1.50 16 25 C -0.15 -3.28 8.04 71.98 0.58 -2.70 16 26 C -0.13 -2.59 8.30 71.98 0.60 -2.00 16 27 C -0.14 -2.73 7.94 71.98 0.57 -2.16 16 28 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.04 1.00 8.00 -2.39 -0.02 0.98 16 30 H 0.03 0.76 7.04 -2.39 -0.02 0.74 16 31 H 0.08 2.59 5.96 -2.39 -0.01 2.57 16 32 H 0.10 2.71 6.68 -2.38 -0.02 2.69 16 33 H 0.42 13.30 8.50 -96.75 -0.82 12.48 16 34 H 0.12 4.89 7.32 -2.91 -0.02 4.87 16 35 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 36 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 37 H 0.11 5.65 6.30 -2.91 -0.02 5.63 16 38 H 0.30 13.22 8.30 -92.71 -0.77 12.45 16 39 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.30 6.65 -2.39 -0.02 1.28 16 42 H 0.06 1.18 7.62 -2.39 -0.02 1.17 16 43 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.05 1.13 6.50 -2.38 -0.02 1.12 16 46 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.06 1.23 7.75 -2.39 -0.02 1.21 16 Total: -1.00 -63.74 381.52 0.80 -62.94 By element: Atomic # 1 Polarization: 44.11 SS G_CDS: 0.16 Total: 44.27 kcal Atomic # 6 Polarization: -79.22 SS G_CDS: 4.91 Total: -74.30 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -0.50 Total: -79.17 kcal Atomic # 8 Polarization: -104.89 SS G_CDS: -5.52 Total: -110.41 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.45 kcal Atomic # 16 Polarization: 118.50 SS G_CDS: -0.28 Total: 118.22 kcal Total: -63.74 0.80 -62.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.377 kcal (2) G-P(sol) polarization free energy of solvation -63.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds