Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.75391 * 2 1 4 4 C 1.52989 * 109.71942 * 239.36715 * 2 1 3 5 5 N 1.45650 * 110.77377 * 287.04753 * 4 2 1 6 6 C 1.33372 * 124.59095 * 338.12726 * 5 4 2 7 7 O 1.21284 * 118.48967 * 184.29442 * 6 5 4 8 8 C 1.50075 * 123.01259 * 4.06864 * 6 5 4 9 9 N 1.47051 * 109.09064 * 347.67281 * 8 6 5 10 10 C 1.34780 * 121.34897 * 222.65235 * 9 8 6 11 11 O 1.21661 * 119.99826 * 173.24254 * 10 9 8 12 12 C 1.46890 * 120.00099 * 353.24038 * 10 9 8 13 13 C 1.36119 * 125.43615 * 340.96924 * 12 10 9 14 14 C 1.41698 * 107.74953 * 179.87695 * 13 12 10 15 15 C 1.40020 * 133.35767 * 180.14757 * 14 13 12 16 16 C 1.36576 * 119.83547 * 180.27472 * 15 14 13 17 17 C 1.38854 * 120.59913 * 359.97438 * 16 15 14 18 18 C 1.37843 * 120.63337 * 359.97438 * 17 16 15 19 19 C 1.39084 * 119.81242 * 0.02842 * 18 17 16 20 20 N 1.37836 * 133.16086 * 180.02562 * 19 18 17 21 21 C 1.36896 * 125.61986 * 359.97438 * 20 19 18 22 22 H 1.07995 * 120.00086 * 142.11679 * 21 20 19 23 23 C 1.39013 * 119.99540 * 322.10730 * 21 20 19 24 24 N 1.31344 * 120.00489 * 341.71457 * 23 21 20 25 25 Si 1.86807 * 119.99610 * 161.71363 * 23 21 20 26 26 H 1.48500 * 109.46759 * 90.00126 * 25 23 21 27 27 H 1.48495 * 109.46799 * 210.00052 * 25 23 21 28 28 H 1.48497 * 109.47141 * 330.00392 * 25 23 21 29 29 H 1.08991 * 109.47263 * 299.36480 * 1 2 3 30 30 H 1.09001 * 109.47210 * 59.36794 * 1 2 3 31 31 H 1.09005 * 109.46953 * 179.36526 * 1 2 3 32 32 H 1.08999 * 109.47693 * 180.63865 * 3 2 1 33 33 H 1.09004 * 109.47250 * 300.63527 * 3 2 1 34 34 H 1.08995 * 109.47092 * 60.63055 * 3 2 1 35 35 H 1.09001 * 109.22210 * 47.38683 * 4 2 1 36 36 H 1.09008 * 109.21735 * 166.76281 * 4 2 1 37 37 H 0.97002 * 117.70203 * 158.09684 * 5 4 2 38 38 H 1.09001 * 109.56068 * 227.72905 * 8 6 5 39 39 H 1.09002 * 109.37955 * 107.49978 * 8 6 5 40 40 H 1.08004 * 126.12668 * 359.97438 * 13 12 10 41 41 H 1.08003 * 120.07960 * 0.25425 * 15 14 13 42 42 H 1.08003 * 119.69603 * 180.02562 * 16 15 14 43 43 H 1.08000 * 119.68057 * 180.02562 * 17 16 15 44 44 H 1.08002 * 120.09440 * 179.97438 * 18 17 16 45 45 H 0.96993 * 120.00415 * 185.05303 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0471 1.4400 0.0000 4 6 2.0462 -0.7338 -1.2392 5 7 1.8446 -2.1705 -1.1101 6 6 1.6868 -2.8119 0.0485 7 8 1.6054 -4.0219 0.0336 8 6 1.6103 -2.1054 1.3704 9 7 2.0269 -0.7064 1.1928 10 6 2.8354 -0.0971 2.0826 11 8 3.2641 1.0176 1.8512 12 6 3.1988 -0.7791 3.3318 13 6 2.5290 -1.8289 3.8815 14 6 3.2004 -2.1922 5.0753 15 6 2.9771 -3.1812 6.0410 16 6 3.8159 -3.2852 7.1138 17 6 4.8911 -2.4183 7.2569 18 6 5.1321 -1.4373 6.3190 19 6 4.2916 -1.3119 5.2179 20 7 4.2728 -0.4545 4.1389 21 6 5.1693 0.5534 3.9057 22 1 5.4966 0.7626 2.8981 23 6 5.6583 1.3077 4.9661 24 7 5.0224 1.3148 6.1154 25 14 7.2199 2.3113 4.7565 26 1 6.8727 3.6718 4.2732 27 1 7.9214 2.4134 6.0613 28 1 8.1067 1.6463 3.7683 29 1 -0.3633 0.5039 0.8955 30 1 -0.3634 0.5236 -0.8843 31 1 -0.3633 -1.0277 -0.0114 32 1 3.1370 1.4347 -0.0115 33 1 1.6770 1.9589 -0.8843 34 1 1.6955 1.9522 0.8955 35 1 1.5113 -0.3740 -2.1181 36 1 3.1104 -0.5308 -1.3590 37 1 1.8233 -2.6978 -1.9241 38 1 2.2717 -2.5954 2.0849 39 1 0.5848 -2.1370 1.7385 40 1 1.6452 -2.3015 3.4790 41 1 2.1433 -3.8600 5.9379 42 1 3.6417 -4.0492 7.8571 43 1 5.5452 -2.5141 8.1109 44 1 5.9707 -0.7674 6.4392 45 1 5.3212 1.8968 6.8314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619715744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = 28.348649 kcal Electronic energy + Delta-G solvation = -30973.512140 eV Core-core repulsion = 26957.829085 eV Total energy + Delta-G solvation = -4015.683055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.18062 -40.16723 -38.74583 -36.75161 -35.76341 -34.45920 -33.60433 -32.80742 -30.66382 -28.99746 -28.28438 -27.92425 -26.82224 -26.25949 -24.97482 -23.28597 -21.84110 -20.95942 -20.20684 -19.51645 -18.26573 -17.83438 -17.11224 -17.02534 -15.86853 -15.65085 -15.52589 -15.34847 -15.09020 -14.72917 -14.70783 -14.16791 -13.78152 -13.62222 -13.23508 -13.17410 -12.90189 -12.74536 -12.52439 -12.50354 -12.20115 -12.05318 -11.93809 -11.82840 -11.56011 -11.34231 -11.24891 -11.21146 -11.07958 -10.75456 -10.59723 -10.29481 -10.15584 -9.76852 -9.21711 -9.13057 -8.70819 -8.65072 -8.45164 -7.15779 -6.84561 -6.60909 -4.41652 1.79861 2.55451 2.76319 2.82763 2.99880 3.03028 3.05809 3.08707 3.26874 3.81400 4.10679 4.40634 4.42098 4.62817 4.67788 4.84027 4.88887 5.08384 5.18354 5.27401 5.40668 5.47762 5.53894 5.59819 5.69989 5.81034 5.86022 5.95738 5.96705 6.09680 6.19770 6.29266 6.37835 6.54553 6.65355 6.67880 6.79610 6.85499 7.00241 7.08171 7.16991 7.18619 7.44689 7.54313 7.59837 7.67329 7.93957 8.05737 8.12459 8.39063 8.63998 8.86460 9.28788 10.19853 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.004871 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.581698 B = 5746.598059 C = 7583.197474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 C -0.131 4.131 4 C 0.106 3.894 5 N -0.718 5.718 6 C 0.515 3.485 7 O -0.551 6.551 8 C 0.078 3.922 9 N -0.610 5.610 10 C 0.598 3.402 11 O -0.513 6.513 12 C -0.028 4.028 13 C -0.224 4.224 14 C -0.121 4.121 15 C -0.093 4.093 16 C -0.153 4.153 17 C -0.155 4.155 18 C -0.047 4.047 19 C 0.083 3.917 20 N -0.225 5.225 21 C -0.334 4.334 22 H 0.113 0.887 23 C 0.053 3.947 24 N -0.818 5.818 25 Si 0.930 3.070 26 H -0.269 1.269 27 H -0.275 1.275 28 H -0.262 1.262 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.397 0.603 38 H 0.151 0.849 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 -1.924 -9.632 11.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.074 3.926 3 C -0.189 4.189 4 C -0.020 4.020 5 N -0.369 5.369 6 C 0.301 3.699 7 O -0.428 6.428 8 C -0.047 4.047 9 N -0.348 5.348 10 C 0.389 3.611 11 O -0.388 6.388 12 C -0.146 4.146 13 C -0.251 4.251 14 C -0.125 4.125 15 C -0.112 4.112 16 C -0.172 4.172 17 C -0.175 4.175 18 C -0.066 4.066 19 C -0.031 4.031 20 N 0.116 4.884 21 C -0.463 4.463 22 H 0.130 0.870 23 C -0.160 4.160 24 N -0.447 5.447 25 Si 0.754 3.246 26 H -0.194 1.194 27 H -0.200 1.200 28 H -0.186 1.186 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.232 0.768 38 H 0.168 0.832 39 H 0.119 0.881 40 H 0.154 0.846 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.132 0.868 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.357 -1.420 -9.380 10.895 hybrid contribution 0.419 0.495 -0.249 0.694 sum -4.938 -0.925 -9.629 10.861 Atomic orbital electron populations 1.22185 0.93856 1.02350 1.03136 1.20910 0.94159 0.94022 0.83540 1.22202 1.03698 0.91474 1.01481 1.21879 1.01851 0.79728 0.98539 1.45371 1.73652 1.08981 1.08916 1.20461 0.75169 0.87795 0.86434 1.90780 1.50925 1.13872 1.87253 1.22602 1.04406 0.82145 0.95555 1.47929 1.50955 1.11858 1.24076 1.17205 0.77149 0.84955 0.81741 1.90818 1.52733 1.19030 1.76238 1.19548 0.94349 1.03183 0.97554 1.20665 1.03594 1.02220 0.98655 1.17946 0.98409 0.99091 0.97089 1.20033 0.99183 0.97694 0.94277 1.20278 0.97358 1.00890 0.98715 1.20543 0.99554 0.98081 0.99362 1.20122 0.98627 0.96168 0.91704 1.18126 0.99368 0.92518 0.93099 1.39913 1.15620 1.19142 1.13765 1.19846 1.19094 1.11131 0.96208 0.86963 1.25642 0.98924 0.96760 0.94633 1.69968 1.36468 1.33992 1.04279 0.85864 0.80343 0.79792 0.78588 1.19399 1.19980 1.18563 0.91352 0.91106 0.92436 0.89579 0.93655 0.90626 0.89570 0.91004 0.76823 0.83159 0.88126 0.84614 0.87791 0.87971 0.87738 0.86843 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.34 37.16 0.31 -1.27 16 2 C 0.16 1.94 1.05 -131.41 -0.14 1.80 16 3 C -0.13 -1.74 6.88 37.16 0.26 -1.49 16 4 C 0.11 1.05 6.05 -4.51 -0.03 1.02 16 5 N -0.72 -8.00 5.32 -61.45 -0.33 -8.33 16 6 C 0.51 7.38 7.28 -11.91 -0.09 7.29 16 7 O -0.55 -9.62 17.80 5.55 0.10 -9.52 16 8 C 0.08 1.13 4.08 -5.20 -0.02 1.11 16 9 N -0.61 -9.52 2.76 -161.01 -0.44 -9.96 16 10 C 0.60 12.18 7.48 -12.76 -0.10 12.09 16 11 O -0.51 -11.45 11.03 5.22 0.06 -11.39 16 12 C -0.03 -0.65 6.46 -82.25 -0.53 -1.19 16 13 C -0.22 -4.70 8.52 -39.02 -0.33 -5.03 16 14 C -0.12 -2.76 6.16 -106.89 -0.66 -3.42 16 15 C -0.09 -1.86 10.06 -39.51 -0.40 -2.26 16 16 C -0.15 -2.95 9.97 -39.95 -0.40 -3.35 16 17 C -0.15 -3.18 10.02 -39.50 -0.40 -3.57 16 18 C -0.05 -1.11 8.55 -39.41 -0.34 -1.44 16 19 C 0.08 2.10 6.09 -83.84 -0.51 1.59 16 20 N -0.22 -5.80 2.83 -56.08 -0.16 -5.96 16 21 C -0.33 -8.77 8.71 -15.00 -0.13 -8.90 16 22 H 0.11 2.95 7.35 -52.49 -0.39 2.57 16 23 C 0.05 1.34 4.42 -17.47 -0.08 1.26 16 24 N -0.82 -21.30 10.87 55.50 0.60 -20.69 16 25 Si 0.93 19.21 29.59 -169.99 -5.03 14.18 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 28 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.57 6.83 -51.93 -0.35 0.22 16 32 H 0.09 1.35 6.50 -51.93 -0.34 1.01 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 1.19 7.08 -51.93 -0.37 0.83 16 35 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 36 H 0.07 0.77 8.07 -51.92 -0.42 0.35 16 37 H 0.40 3.71 8.80 -40.82 -0.36 3.36 16 38 H 0.15 2.46 4.56 -51.93 -0.24 2.22 16 39 H 0.10 1.26 7.62 -51.93 -0.40 0.86 16 40 H 0.14 2.35 5.35 -52.48 -0.28 2.07 16 41 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 42 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.11 2.76 6.39 -52.49 -0.34 2.43 16 45 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 355.17 15.07 5.35 5.35 Total: -1.00 -31.25 355.17 -8.99 -40.24 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -5.56 Total: 11.85 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -3.57 Total: -5.76 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.33 Total: -44.94 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.16 Total: -20.92 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.25 -8.99 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619715744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.585 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds