Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.75391 * 2 1 4 4 C 1.52989 * 109.71942 * 239.36715 * 2 1 3 5 5 N 1.45650 * 110.77377 * 287.04753 * 4 2 1 6 6 C 1.33372 * 124.59095 * 338.12726 * 5 4 2 7 7 O 1.21284 * 118.48967 * 184.29442 * 6 5 4 8 8 C 1.50075 * 123.01259 * 4.06864 * 6 5 4 9 9 N 1.47051 * 109.09064 * 347.67281 * 8 6 5 10 10 C 1.34780 * 121.34897 * 222.65235 * 9 8 6 11 11 O 1.21661 * 119.99826 * 173.24254 * 10 9 8 12 12 C 1.46890 * 120.00099 * 353.24038 * 10 9 8 13 13 C 1.36119 * 125.43615 * 340.96924 * 12 10 9 14 14 C 1.41698 * 107.74953 * 179.87695 * 13 12 10 15 15 C 1.40020 * 133.35767 * 180.14757 * 14 13 12 16 16 C 1.36576 * 119.83547 * 180.27472 * 15 14 13 17 17 C 1.38854 * 120.59913 * 359.97438 * 16 15 14 18 18 C 1.37843 * 120.63337 * 359.97438 * 17 16 15 19 19 C 1.39084 * 119.81242 * 0.02842 * 18 17 16 20 20 N 1.37836 * 133.16086 * 180.02562 * 19 18 17 21 21 C 1.36896 * 125.61986 * 359.97438 * 20 19 18 22 22 H 1.07995 * 120.00086 * 142.11679 * 21 20 19 23 23 C 1.39013 * 119.99540 * 322.10730 * 21 20 19 24 24 N 1.31344 * 120.00489 * 341.71457 * 23 21 20 25 25 Si 1.86807 * 119.99610 * 161.71363 * 23 21 20 26 26 H 1.48500 * 109.46759 * 90.00126 * 25 23 21 27 27 H 1.48495 * 109.46799 * 210.00052 * 25 23 21 28 28 H 1.48497 * 109.47141 * 330.00392 * 25 23 21 29 29 H 1.08991 * 109.47263 * 299.36480 * 1 2 3 30 30 H 1.09001 * 109.47210 * 59.36794 * 1 2 3 31 31 H 1.09005 * 109.46953 * 179.36526 * 1 2 3 32 32 H 1.08999 * 109.47693 * 180.63865 * 3 2 1 33 33 H 1.09004 * 109.47250 * 300.63527 * 3 2 1 34 34 H 1.08995 * 109.47092 * 60.63055 * 3 2 1 35 35 H 1.09001 * 109.22210 * 47.38683 * 4 2 1 36 36 H 1.09008 * 109.21735 * 166.76281 * 4 2 1 37 37 H 0.97002 * 117.70203 * 158.09684 * 5 4 2 38 38 H 1.09001 * 109.56068 * 227.72905 * 8 6 5 39 39 H 1.09002 * 109.37955 * 107.49978 * 8 6 5 40 40 H 1.08004 * 126.12668 * 359.97438 * 13 12 10 41 41 H 1.08003 * 120.07960 * 0.25425 * 15 14 13 42 42 H 1.08003 * 119.69603 * 180.02562 * 16 15 14 43 43 H 1.08000 * 119.68057 * 180.02562 * 17 16 15 44 44 H 1.08002 * 120.09440 * 179.97438 * 18 17 16 45 45 H 0.96993 * 120.00415 * 185.05303 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0471 1.4400 0.0000 4 6 2.0462 -0.7338 -1.2392 5 7 1.8446 -2.1705 -1.1101 6 6 1.6868 -2.8119 0.0485 7 8 1.6054 -4.0219 0.0336 8 6 1.6103 -2.1054 1.3704 9 7 2.0269 -0.7064 1.1928 10 6 2.8354 -0.0971 2.0826 11 8 3.2641 1.0176 1.8512 12 6 3.1988 -0.7791 3.3318 13 6 2.5290 -1.8289 3.8815 14 6 3.2004 -2.1922 5.0753 15 6 2.9771 -3.1812 6.0410 16 6 3.8159 -3.2852 7.1138 17 6 4.8911 -2.4183 7.2569 18 6 5.1321 -1.4373 6.3190 19 6 4.2916 -1.3119 5.2179 20 7 4.2728 -0.4545 4.1389 21 6 5.1693 0.5534 3.9057 22 1 5.4966 0.7626 2.8981 23 6 5.6583 1.3077 4.9661 24 7 5.0224 1.3148 6.1154 25 14 7.2199 2.3113 4.7565 26 1 6.8727 3.6718 4.2732 27 1 7.9214 2.4134 6.0613 28 1 8.1067 1.6463 3.7683 29 1 -0.3633 0.5039 0.8955 30 1 -0.3634 0.5236 -0.8843 31 1 -0.3633 -1.0277 -0.0114 32 1 3.1370 1.4347 -0.0115 33 1 1.6770 1.9589 -0.8843 34 1 1.6955 1.9522 0.8955 35 1 1.5113 -0.3740 -2.1181 36 1 3.1104 -0.5308 -1.3590 37 1 1.8233 -2.6978 -1.9241 38 1 2.2717 -2.5954 2.0849 39 1 0.5848 -2.1370 1.7385 40 1 1.6452 -2.3015 3.4790 41 1 2.1433 -3.8600 5.9379 42 1 3.6417 -4.0492 7.8571 43 1 5.5452 -2.5141 8.1109 44 1 5.9707 -0.7674 6.4392 45 1 5.3212 1.8968 6.8314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619715744.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = 8.083502 kcal Electronic energy + Delta-G solvation = -30974.390902 eV Core-core repulsion = 26957.829085 eV Total energy + Delta-G solvation = -4016.561817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.57959 -41.63710 -40.10393 -38.07939 -37.36551 -35.92811 -35.07860 -34.02297 -32.39251 -30.68408 -29.76483 -29.19000 -27.90433 -27.22234 -26.79534 -24.79432 -23.14284 -22.54501 -21.78360 -21.03227 -19.78506 -19.17236 -18.44710 -18.18359 -17.34542 -17.09616 -16.90801 -16.83333 -16.46235 -16.25660 -15.99056 -15.63460 -15.25731 -14.91723 -14.67523 -14.58173 -14.47994 -14.14755 -13.87292 -13.80208 -13.55913 -13.44925 -13.09621 -13.04444 -12.98839 -12.94102 -12.83262 -12.36708 -12.32653 -12.20222 -12.13850 -11.98638 -11.51228 -11.34250 -10.92509 -10.38327 -10.20288 -10.18931 -9.72246 -8.92711 -8.62042 -8.34787 -6.34362 0.14528 1.09549 1.29374 1.33935 1.40033 1.42721 1.43978 1.59164 2.10752 2.21397 2.43638 2.86146 2.96311 3.35342 3.37685 3.49587 3.70044 3.90871 4.00794 4.15467 4.25173 4.38045 4.43230 4.47210 4.51106 4.62728 4.69982 4.71653 4.79119 4.85602 4.87176 4.98595 5.02111 5.08484 5.19718 5.25926 5.31904 5.38118 5.46680 5.62432 5.73292 5.78185 5.91460 5.97680 6.09238 6.14127 6.25028 6.38856 6.58578 6.94976 7.06479 7.23664 7.47593 8.37343 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.004871 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.581698 B = 5746.598059 C = 7583.197474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.149 3.851 3 C -0.123 4.123 4 C 0.108 3.892 5 N -0.702 5.702 6 C 0.518 3.482 7 O -0.584 6.584 8 C 0.076 3.924 9 N -0.599 5.599 10 C 0.593 3.407 11 O -0.544 6.544 12 C -0.054 4.054 13 C -0.204 4.204 14 C -0.149 4.149 15 C -0.089 4.089 16 C -0.154 4.154 17 C -0.140 4.140 18 C -0.087 4.087 19 C 0.057 3.943 20 N -0.259 5.259 21 C -0.363 4.363 22 H 0.094 0.906 23 C 0.016 3.984 24 N -0.854 5.854 25 Si 0.992 3.008 26 H -0.267 1.267 27 H -0.263 1.263 28 H -0.261 1.261 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.135 0.865 36 H 0.064 0.936 37 H 0.410 0.590 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.173 0.827 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.132 0.868 44 H 0.093 0.907 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.780 -3.376 -10.863 13.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.066 3.934 3 C -0.180 4.180 4 C -0.017 4.017 5 N -0.353 5.353 6 C 0.305 3.695 7 O -0.465 6.465 8 C -0.049 4.049 9 N -0.336 5.336 10 C 0.384 3.616 11 O -0.422 6.422 12 C -0.171 4.171 13 C -0.231 4.231 14 C -0.154 4.154 15 C -0.107 4.107 16 C -0.173 4.173 17 C -0.161 4.161 18 C -0.107 4.107 19 C -0.057 4.057 20 N 0.080 4.920 21 C -0.491 4.491 22 H 0.112 0.888 23 C -0.193 4.193 24 N -0.484 5.484 25 Si 0.813 3.187 26 H -0.191 1.191 27 H -0.187 1.187 28 H -0.185 1.185 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.153 0.847 36 H 0.083 0.917 37 H 0.248 0.752 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.190 0.810 41 H 0.159 0.841 42 H 0.164 0.836 43 H 0.150 0.850 44 H 0.111 0.889 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.301 -2.876 -10.673 13.247 hybrid contribution 0.883 0.807 0.096 1.201 sum -6.418 -2.069 -10.577 12.543 Atomic orbital electron populations 1.22156 0.91346 1.03086 1.04185 1.21295 0.95938 0.93320 0.82860 1.22005 1.01749 0.92527 1.01759 1.21999 1.02177 0.78588 0.98893 1.45251 1.71893 1.09617 1.08551 1.20261 0.75129 0.87218 0.86928 1.90774 1.52919 1.15122 1.87683 1.22597 1.05218 0.81092 0.95949 1.47906 1.49337 1.12298 1.24028 1.17144 0.77895 0.84657 0.81951 1.90814 1.54142 1.20281 1.76942 1.20294 0.94475 1.03782 0.98517 1.21131 1.03678 1.00726 0.97524 1.18456 0.98309 1.00010 0.98597 1.20495 1.00052 0.96908 0.93279 1.20745 0.96112 1.01115 0.99278 1.20976 0.99884 0.96439 0.98778 1.20187 0.99195 0.98021 0.93307 1.18671 1.00518 0.93154 0.93352 1.40094 1.16918 1.19994 1.15039 1.19787 1.20881 1.12591 0.95851 0.88818 1.26426 1.01317 0.97404 0.94111 1.70048 1.38145 1.35179 1.05015 0.84973 0.76775 0.78124 0.78851 1.19150 1.18725 1.18455 0.92664 0.87759 0.91801 0.92643 0.89575 0.93832 0.84671 0.91722 0.75249 0.85134 0.85536 0.81019 0.84124 0.83635 0.84980 0.88918 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.34 71.98 0.60 -1.90 16 2 C 0.15 3.36 1.05 3.45 0.00 3.36 16 3 C -0.12 -3.20 6.88 71.98 0.50 -2.70 16 4 C 0.11 1.80 6.05 86.54 0.52 2.32 16 5 N -0.70 -13.57 5.32 -467.50 -2.49 -16.06 16 6 C 0.52 13.82 7.28 87.68 0.64 14.46 16 7 O -0.58 -19.49 17.80 -3.04 -0.05 -19.55 16 8 C 0.08 2.10 4.08 85.33 0.35 2.45 16 9 N -0.60 -18.47 2.76 -781.56 -2.16 -20.63 16 10 C 0.59 25.22 7.48 86.51 0.65 25.87 16 11 O -0.54 -25.92 11.03 -4.23 -0.05 -25.97 16 12 C -0.05 -2.60 6.46 39.91 0.26 -2.34 16 13 C -0.20 -8.59 8.52 22.63 0.19 -8.40 16 14 C -0.15 -6.82 6.16 -21.34 -0.13 -6.95 16 15 C -0.09 -3.36 10.06 22.31 0.22 -3.13 16 16 C -0.15 -5.48 9.97 22.03 0.22 -5.26 16 17 C -0.14 -5.65 10.02 22.32 0.22 -5.42 16 18 C -0.09 -4.29 8.55 22.38 0.19 -4.10 16 19 C 0.06 3.01 6.09 39.06 0.24 3.24 16 20 N -0.26 -14.20 2.83 -331.34 -0.94 -15.14 16 21 C -0.36 -20.52 8.71 84.09 0.73 -19.79 16 22 H 0.09 5.40 7.35 -2.91 -0.02 5.38 16 23 C 0.02 0.86 4.42 84.95 0.38 1.24 16 24 N -0.85 -47.13 10.87 21.67 0.24 -46.89 16 25 Si 0.99 41.65 29.59 68.60 2.03 43.68 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 28 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.01 6.83 -2.38 -0.02 1.00 16 32 H 0.05 1.79 6.50 -2.39 -0.02 1.78 16 33 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.04 1.41 7.08 -2.39 -0.02 1.39 16 35 H 0.14 1.07 8.08 -2.39 -0.02 1.05 16 36 H 0.06 1.25 8.07 -2.38 -0.02 1.23 16 37 H 0.41 6.28 8.80 -92.71 -0.82 5.47 16 38 H 0.13 4.20 4.56 -2.39 -0.01 4.19 16 39 H 0.13 2.84 7.62 -2.39 -0.02 2.82 16 40 H 0.17 5.71 5.35 -2.91 -0.02 5.70 16 41 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 42 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 43 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 44 H 0.09 4.83 6.39 -2.91 -0.02 4.81 16 45 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -75.44 355.17 2.59 -72.84 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: 0.23 Total: 34.76 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.78 Total: -7.05 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -5.35 Total: -98.72 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -0.10 Total: -45.51 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -75.44 2.59 -72.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619715744.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.924 kcal (2) G-P(sol) polarization free energy of solvation -75.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds