Wall clock time and date at job start Sat Apr 11 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47327 * 2 1 4 4 C 1.32998 * 120.00163 * 123.88468 * 3 2 1 5 5 C 1.50697 * 119.99923 * 354.81350 * 4 3 2 6 6 C 1.47102 * 120.00100 * 174.81830 * 4 3 2 7 7 O 1.21613 * 120.00308 * 108.26697 * 6 4 3 8 8 N 1.34783 * 119.99557 * 288.26906 * 6 4 3 9 9 C 1.47315 * 122.25248 * 354.96499 * 8 6 4 10 10 S 1.84078 * 102.61759 * 204.74098 * 9 8 6 11 11 C 1.84220 * 93.90791 * 326.64969 * 10 9 8 12 12 C 1.45502 * 122.42606 * 175.02680 * 8 6 4 13 13 H 1.09004 * 108.75080 * 58.12096 * 12 8 6 14 14 C 1.50695 * 108.75431 * 299.89087 * 12 8 6 15 15 O 1.20826 * 120.00641 * 357.56208 * 14 12 8 16 16 O 1.34234 * 119.99509 * 177.55463 * 14 12 8 17 17 C 1.45206 * 116.99696 * 180.02562 * 16 14 12 18 18 C 1.52997 * 109.47015 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47162 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47102 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00230 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99900 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99988 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99917 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47027 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46962 * 120.00342 * 24 22 20 27 27 H 1.48508 * 109.46882 * 239.99800 * 24 22 20 28 28 H 1.09004 * 109.46570 * 60.00095 * 1 2 3 29 29 H 1.08998 * 109.47676 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47465 * 300.00278 * 1 2 3 31 31 H 1.09005 * 109.47641 * 239.99991 * 2 1 3 32 32 H 1.08999 * 109.46991 * 120.00084 * 2 1 3 33 33 H 1.08000 * 119.99933 * 303.88425 * 3 2 1 34 34 H 1.08993 * 109.47085 * 184.90338 * 5 4 3 35 35 H 1.09002 * 109.47111 * 304.90450 * 5 4 3 36 36 H 1.08995 * 109.47065 * 64.90278 * 5 4 3 37 37 H 1.08999 * 110.71442 * 86.49373 * 9 8 6 38 38 H 1.08998 * 110.85883 * 323.04758 * 9 8 6 39 39 H 1.08995 * 111.05028 * 274.24556 * 11 10 9 40 40 H 1.09004 * 111.04871 * 150.27517 * 11 10 9 41 41 H 1.09001 * 109.47225 * 59.99882 * 17 16 14 42 42 H 1.08998 * 109.46995 * 299.99551 * 17 16 14 43 43 H 1.09001 * 109.47439 * 59.99745 * 18 17 16 44 44 H 1.09007 * 109.47195 * 299.99404 * 18 17 16 45 45 H 1.09001 * 109.47075 * 59.99616 * 19 18 17 46 46 H 1.08993 * 109.47195 * 299.99829 * 19 18 17 47 47 H 0.96993 * 119.99871 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8594 1.8337 0.9562 5 6 3.2021 0.9183 2.1032 6 6 3.4397 3.1840 0.8942 7 8 3.0643 4.0434 1.6684 8 7 4.3876 3.4687 -0.0208 9 6 4.9564 2.4407 -0.9095 10 16 6.6052 3.1420 -1.3319 11 6 6.0142 4.8863 -1.2900 12 6 4.9213 4.8104 -0.1997 13 1 5.3458 5.1476 0.7460 14 6 3.7929 5.7341 -0.5796 15 8 2.6771 5.2954 -0.7288 16 8 4.0275 7.0445 -0.7522 17 6 2.8934 7.8747 -1.1170 18 6 3.3521 9.3263 -1.2693 19 6 2.1573 10.2010 -1.6543 20 6 2.6090 11.6310 -1.8037 21 1 3.6446 11.8901 -1.6399 22 6 1.7001 12.6085 -2.1494 23 7 0.4391 12.2929 -2.3494 24 14 2.2599 14.3811 -2.3338 25 1 3.7161 14.4716 -2.0577 26 1 1.9893 14.8441 -3.7187 27 1 1.5190 15.2367 -1.3723 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7207 2.1037 -0.7765 34 1 3.8172 1.4551 2.8252 35 1 2.2846 0.5821 2.5863 36 1 3.7521 0.0555 1.7276 37 1 4.3453 2.3236 -1.8044 38 1 5.0631 1.4908 -0.3857 39 1 5.5896 5.1789 -2.2502 40 1 6.8153 5.5641 -0.9951 41 1 2.1328 7.8133 -0.3387 42 1 2.4761 7.5251 -2.0613 43 1 4.1125 9.3874 -2.0479 44 1 3.7697 9.6764 -0.3252 45 1 1.3966 10.1400 -0.8761 46 1 1.7400 9.8510 -2.5984 47 1 -0.2003 12.9806 -2.5922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730323124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:32 Heat of formation + Delta-G solvation = -109.792347 kcal Electronic energy + Delta-G solvation = -27453.434939 eV Core-core repulsion = 23534.912841 eV Total energy + Delta-G solvation = -3918.522098 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14667 -39.71596 -37.09259 -36.47111 -36.16398 -34.03908 -32.62560 -31.80986 -31.29385 -27.95977 -27.50191 -27.15542 -25.43609 -24.22137 -23.04915 -21.76111 -20.47524 -20.14074 -18.91634 -18.01894 -17.76541 -17.23898 -16.72752 -16.33885 -16.09687 -15.78244 -15.28079 -15.09943 -14.52120 -14.48219 -14.40777 -14.12748 -13.79190 -13.73499 -13.56072 -13.13654 -12.89523 -12.72014 -12.60308 -12.48561 -12.23797 -12.18060 -12.04535 -11.89295 -11.79401 -11.34010 -11.27906 -11.00013 -10.67792 -10.63096 -10.44124 -10.43211 -10.17636 -9.75587 -9.58525 -9.34551 -9.29082 -9.15409 -8.40348 -8.39112 -6.04755 -4.07875 1.05955 1.26053 1.40758 2.11390 2.16072 2.32356 2.90793 3.29340 3.36761 3.41048 3.66832 4.08391 4.36017 4.43243 4.47243 4.52945 4.65046 4.70328 4.75049 4.79072 4.90601 4.96752 5.07787 5.18514 5.19368 5.24849 5.31299 5.49422 5.52481 5.53453 5.54473 5.59136 5.65919 5.81344 5.97420 6.06311 6.17138 6.41068 6.51042 6.67389 6.78622 6.95239 7.58720 7.67026 7.69246 7.82344 7.93524 8.34206 8.98600 9.56549 11.06779 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.002259 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.924030 B =12393.813091 C =13665.395257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C -0.102 4.102 4 C -0.167 4.167 5 C -0.102 4.102 6 C 0.582 3.418 7 O -0.508 6.508 8 N -0.602 5.602 9 C 0.157 3.843 10 S -0.253 6.253 11 C -0.059 4.059 12 C 0.143 3.857 13 H 0.127 0.873 14 C 0.451 3.549 15 O -0.492 6.492 16 O -0.353 6.353 17 C 0.070 3.930 18 C -0.108 4.108 19 C 0.024 3.976 20 C -0.521 4.521 21 H 0.058 0.942 22 C 0.056 3.944 23 N -0.894 5.894 24 Si 0.895 3.105 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.283 1.283 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.140 0.860 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.685 -29.286 3.905 31.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.121 4.121 4 C -0.170 4.170 5 C -0.159 4.159 6 C 0.369 3.631 7 O -0.381 6.381 8 N -0.340 5.340 9 C -0.077 4.077 10 S -0.026 6.026 11 C -0.207 4.207 12 C 0.035 3.965 13 H 0.145 0.855 14 C 0.290 3.710 15 O -0.378 6.378 16 O -0.269 6.269 17 C -0.003 4.003 18 C -0.146 4.146 19 C -0.014 4.014 20 C -0.559 4.559 21 H 0.077 0.923 22 C -0.145 4.145 23 N -0.534 5.534 24 Si 0.723 3.277 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.158 0.842 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.039 -29.353 4.029 31.283 hybrid contribution -1.155 1.655 -0.092 2.020 sum 8.883 -27.698 3.937 29.353 Atomic orbital electron populations 1.21715 0.94572 1.01927 1.02583 1.20785 0.96769 0.93094 1.03177 1.23460 0.94707 0.97281 0.96656 1.21264 1.02668 0.93776 0.99329 1.20661 1.02413 0.97595 0.95227 1.18367 0.77289 0.88663 0.78736 1.90867 1.58549 1.48829 1.39876 1.48194 1.41660 1.06351 1.37757 1.24217 0.92219 0.94322 0.96922 1.88448 1.15638 1.05578 1.92944 1.24488 0.99337 0.95885 1.01030 1.20760 0.91222 0.82290 1.02204 0.85518 1.23500 0.89791 0.83114 0.74628 1.90658 1.24282 1.77096 1.45779 1.86467 1.42675 1.18431 1.79360 1.23554 0.85868 0.90561 1.00292 1.21772 1.01676 0.89270 1.01842 1.19058 0.91767 0.93545 0.96983 1.21201 0.95211 0.92363 1.47103 0.92341 1.25042 0.94900 0.99260 0.95334 1.69977 1.02250 1.33507 1.47619 0.86485 0.78854 0.84670 0.77699 1.19651 1.20970 1.20951 0.92321 0.92251 0.92370 0.90085 0.90534 0.86254 0.91577 0.90542 0.90797 0.88335 0.86031 0.87086 0.84170 0.91399 0.91543 0.92089 0.92034 0.96217 0.96257 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.54 16 2 C -0.10 -0.56 6.21 -27.89 -0.17 -0.73 16 3 C -0.10 -0.84 8.88 -36.13 -0.32 -1.16 16 4 C -0.17 -1.57 4.47 -102.85 -0.46 -2.03 16 5 C -0.10 -0.69 8.55 36.00 0.31 -0.38 16 6 C 0.58 7.55 5.92 -12.66 -0.08 7.48 16 7 O -0.51 -8.93 16.15 -10.39 -0.17 -9.09 16 8 N -0.60 -6.56 2.74 -170.78 -0.47 -7.03 16 9 C 0.16 1.18 6.87 60.29 0.41 1.59 16 10 S -0.25 -2.06 23.43 -107.50 -2.52 -4.57 16 11 C -0.06 -0.50 6.95 37.98 0.26 -0.23 16 12 C 0.14 1.63 2.93 -68.80 -0.20 1.43 16 13 H 0.13 1.39 8.14 -51.93 -0.42 0.97 16 14 C 0.45 7.06 6.52 36.00 0.23 7.29 16 15 O -0.49 -9.15 14.63 -24.35 -0.36 -9.50 16 16 O -0.35 -5.86 10.12 -39.27 -0.40 -6.26 16 17 C 0.07 1.32 5.47 37.16 0.20 1.52 16 18 C -0.11 -2.25 5.53 -26.73 -0.15 -2.39 16 19 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 20 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 21 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 23 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 24 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.35 5.86 -51.93 -0.30 0.05 16 33 H 0.12 1.17 8.05 -52.49 -0.42 0.74 16 34 H 0.07 0.50 7.99 -51.93 -0.42 0.09 16 35 H 0.08 0.47 7.69 -51.93 -0.40 0.07 16 36 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.12 0.67 7.56 -51.93 -0.39 0.27 16 39 H 0.11 0.94 7.85 -51.93 -0.41 0.54 16 40 H 0.14 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 42 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 403.71 15.07 6.08 6.08 Total: -1.00 -35.03 403.71 -10.03 -45.06 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -7.79 Total: -3.83 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.14 Total: -1.21 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.27 Total: -33.29 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.92 Total: -24.86 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -2.06 SS G_CDS: -2.52 Total: -4.57 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.03 -10.03 -45.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730323124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.735 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds