Wall clock time and date at job start Sat Apr 11 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47327 * 2 1 4 4 C 1.32998 * 120.00163 * 123.88468 * 3 2 1 5 5 C 1.50697 * 119.99923 * 354.81350 * 4 3 2 6 6 C 1.47102 * 120.00100 * 174.81830 * 4 3 2 7 7 O 1.21613 * 120.00308 * 108.26697 * 6 4 3 8 8 N 1.34783 * 119.99557 * 288.26906 * 6 4 3 9 9 C 1.47315 * 122.25248 * 354.96499 * 8 6 4 10 10 S 1.84078 * 102.61759 * 204.74098 * 9 8 6 11 11 C 1.84220 * 93.90791 * 326.64969 * 10 9 8 12 12 C 1.45502 * 122.42606 * 175.02680 * 8 6 4 13 13 H 1.09004 * 108.75080 * 58.12096 * 12 8 6 14 14 C 1.50695 * 108.75431 * 299.89087 * 12 8 6 15 15 O 1.20826 * 120.00641 * 357.56208 * 14 12 8 16 16 O 1.34234 * 119.99509 * 177.55463 * 14 12 8 17 17 C 1.45206 * 116.99696 * 180.02562 * 16 14 12 18 18 C 1.52997 * 109.47015 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47162 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47102 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00230 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99900 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99988 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99917 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47027 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46962 * 120.00342 * 24 22 20 27 27 H 1.48508 * 109.46882 * 239.99800 * 24 22 20 28 28 H 1.09004 * 109.46570 * 60.00095 * 1 2 3 29 29 H 1.08998 * 109.47676 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47465 * 300.00278 * 1 2 3 31 31 H 1.09005 * 109.47641 * 239.99991 * 2 1 3 32 32 H 1.08999 * 109.46991 * 120.00084 * 2 1 3 33 33 H 1.08000 * 119.99933 * 303.88425 * 3 2 1 34 34 H 1.08993 * 109.47085 * 184.90338 * 5 4 3 35 35 H 1.09002 * 109.47111 * 304.90450 * 5 4 3 36 36 H 1.08995 * 109.47065 * 64.90278 * 5 4 3 37 37 H 1.08999 * 110.71442 * 86.49373 * 9 8 6 38 38 H 1.08998 * 110.85883 * 323.04758 * 9 8 6 39 39 H 1.08995 * 111.05028 * 274.24556 * 11 10 9 40 40 H 1.09004 * 111.04871 * 150.27517 * 11 10 9 41 41 H 1.09001 * 109.47225 * 59.99882 * 17 16 14 42 42 H 1.08998 * 109.46995 * 299.99551 * 17 16 14 43 43 H 1.09001 * 109.47439 * 59.99745 * 18 17 16 44 44 H 1.09007 * 109.47195 * 299.99404 * 18 17 16 45 45 H 1.09001 * 109.47075 * 59.99616 * 19 18 17 46 46 H 1.08993 * 109.47195 * 299.99829 * 19 18 17 47 47 H 0.96993 * 119.99871 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8594 1.8337 0.9562 5 6 3.2021 0.9183 2.1032 6 6 3.4397 3.1840 0.8942 7 8 3.0643 4.0434 1.6684 8 7 4.3876 3.4687 -0.0208 9 6 4.9564 2.4407 -0.9095 10 16 6.6052 3.1420 -1.3319 11 6 6.0142 4.8863 -1.2900 12 6 4.9213 4.8104 -0.1997 13 1 5.3458 5.1476 0.7460 14 6 3.7929 5.7341 -0.5796 15 8 2.6771 5.2954 -0.7288 16 8 4.0275 7.0445 -0.7522 17 6 2.8934 7.8747 -1.1170 18 6 3.3521 9.3263 -1.2693 19 6 2.1573 10.2010 -1.6543 20 6 2.6090 11.6310 -1.8037 21 1 3.6446 11.8901 -1.6399 22 6 1.7001 12.6085 -2.1494 23 7 0.4391 12.2929 -2.3494 24 14 2.2599 14.3811 -2.3338 25 1 3.7161 14.4716 -2.0577 26 1 1.9893 14.8441 -3.7187 27 1 1.5190 15.2367 -1.3723 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7207 2.1037 -0.7765 34 1 3.8172 1.4551 2.8252 35 1 2.2846 0.5821 2.5863 36 1 3.7521 0.0555 1.7276 37 1 4.3453 2.3236 -1.8044 38 1 5.0631 1.4908 -0.3857 39 1 5.5896 5.1789 -2.2502 40 1 6.8153 5.5641 -0.9951 41 1 2.1328 7.8133 -0.3387 42 1 2.4761 7.5251 -2.0613 43 1 4.1125 9.3874 -2.0479 44 1 3.7697 9.6764 -0.3252 45 1 1.3966 10.1400 -0.8761 46 1 1.7400 9.8510 -2.5984 47 1 -0.2003 12.9806 -2.5922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730323124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:32 Heat of formation + Delta-G solvation = -129.056941 kcal Electronic energy + Delta-G solvation = -27454.270314 eV Core-core repulsion = 23534.912841 eV Total energy + Delta-G solvation = -3919.357473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.27005 -40.87485 -38.21007 -37.36843 -37.24524 -36.00009 -33.85006 -33.20963 -32.09771 -29.16801 -28.59902 -28.07056 -26.33253 -25.55640 -24.35938 -22.74011 -22.23876 -21.18111 -19.75602 -19.20135 -18.73332 -18.52022 -18.10949 -17.64877 -17.48394 -16.68777 -16.50944 -16.20095 -15.87207 -15.73345 -15.13018 -14.93722 -14.80530 -14.61456 -14.44249 -14.12493 -14.08978 -13.95871 -13.79572 -13.53047 -13.34632 -13.14322 -13.07628 -12.87180 -12.81727 -12.54448 -12.52764 -12.38471 -12.23905 -12.16260 -11.75330 -11.69208 -11.50377 -11.42439 -11.27936 -11.06744 -10.60895 -10.26725 -9.97899 -9.02169 -8.24394 -6.36235 0.39902 0.52815 0.67177 0.95215 1.14930 1.40173 1.40565 1.40944 1.54354 1.79692 2.39413 2.86084 3.09652 3.27929 3.36819 3.70057 3.89642 3.90883 3.95849 3.97298 4.14175 4.14788 4.24132 4.28407 4.31775 4.34053 4.44843 4.64272 4.70263 4.73578 4.74857 4.77315 4.84886 5.02292 5.03174 5.04524 5.12852 5.27684 5.31537 5.45726 5.48701 5.56183 5.58761 5.76801 5.79145 6.15290 6.44905 6.76436 6.79935 7.33590 8.88265 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.002259 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.924030 B =12393.813091 C =13665.395257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 C -0.092 4.092 4 C -0.180 4.180 5 C -0.097 4.097 6 C 0.575 3.425 7 O -0.567 6.567 8 N -0.601 5.601 9 C 0.154 3.846 10 S -0.241 6.241 11 C -0.055 4.055 12 C 0.145 3.855 13 H 0.133 0.867 14 C 0.448 3.552 15 O -0.525 6.525 16 O -0.347 6.347 17 C 0.081 3.919 18 C -0.091 4.091 19 C 0.025 3.975 20 C -0.541 4.541 21 H 0.067 0.933 22 C -0.003 4.003 23 N -0.935 5.935 24 Si 0.971 3.029 25 H -0.258 1.258 26 H -0.277 1.277 27 H -0.279 1.279 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.148 0.852 39 H 0.111 0.889 40 H 0.163 0.837 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.066 0.934 45 H -0.008 1.008 46 H -0.002 1.002 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.923 -30.843 3.523 33.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.132 4.132 3 C -0.111 4.111 4 C -0.183 4.183 5 C -0.154 4.154 6 C 0.365 3.635 7 O -0.445 6.445 8 N -0.337 5.337 9 C -0.078 4.078 10 S -0.014 6.014 11 C -0.204 4.204 12 C 0.038 3.962 13 H 0.150 0.850 14 C 0.288 3.712 15 O -0.414 6.414 16 O -0.263 6.263 17 C 0.007 3.993 18 C -0.129 4.129 19 C -0.012 4.012 20 C -0.579 4.579 21 H 0.086 0.914 22 C -0.201 4.201 23 N -0.575 5.575 24 Si 0.795 3.205 25 H -0.182 1.182 26 H -0.203 1.203 27 H -0.205 1.205 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.166 0.834 39 H 0.130 0.870 40 H 0.181 0.819 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.010 0.990 46 H 0.016 0.984 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.326 -30.950 3.619 33.510 hybrid contribution -1.883 2.065 -0.001 2.795 sum 10.443 -28.885 3.618 30.927 Atomic orbital electron populations 1.21737 0.95105 1.02717 1.01481 1.20842 0.96136 0.91199 1.05008 1.23534 0.93709 0.98433 0.95391 1.21337 1.03646 0.92482 1.00866 1.20716 1.02907 0.97794 0.93972 1.19099 0.76934 0.89513 0.77996 1.90828 1.60586 1.50739 1.42312 1.48331 1.41105 1.06791 1.37474 1.24492 0.91959 0.94388 0.96998 1.88459 1.15434 1.04702 1.92848 1.24537 0.98846 0.97080 0.99890 1.20960 0.90092 0.81762 1.03433 0.84978 1.24467 0.90650 0.82743 0.73291 1.90646 1.26014 1.77401 1.47306 1.86454 1.41230 1.19147 1.79464 1.23148 0.86145 0.90226 0.99751 1.21459 0.99622 0.89476 1.02344 1.18941 0.93016 0.94211 0.95020 1.21642 0.95764 0.93496 1.46984 0.91443 1.26050 0.94878 1.04374 0.94793 1.70114 1.03637 1.35257 1.48526 0.85310 0.78988 0.78399 0.77816 1.18197 1.20279 1.20510 0.93259 0.90495 0.93720 0.87985 0.88803 0.88453 0.92801 0.89917 0.87629 0.87429 0.83449 0.87016 0.81911 0.93036 0.91640 0.90669 0.91542 0.98975 0.98392 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.89 71.98 0.71 -0.94 16 2 C -0.10 -0.83 6.21 29.85 0.19 -0.64 16 3 C -0.09 -1.43 8.88 24.52 0.22 -1.21 16 4 C -0.18 -3.26 4.47 -18.70 -0.08 -3.35 16 5 C -0.10 -1.14 8.55 71.24 0.61 -0.53 16 6 C 0.57 15.16 5.92 86.57 0.51 15.67 16 7 O -0.57 -20.91 16.15 10.89 0.18 -20.73 16 8 N -0.60 -12.78 2.74 -812.49 -2.23 -15.01 16 9 C 0.15 2.01 6.87 127.61 0.88 2.89 16 10 S -0.24 -3.35 23.43 -56.49 -1.32 -4.68 16 11 C -0.06 -0.83 6.95 72.51 0.50 -0.33 16 12 C 0.15 3.25 2.93 44.96 0.13 3.38 16 13 H 0.13 2.85 8.14 -2.38 -0.02 2.83 16 14 C 0.45 14.26 6.52 71.23 0.46 14.73 16 15 O -0.53 -20.34 14.63 27.32 0.40 -19.94 16 16 O -0.35 -11.58 10.12 -51.46 -0.52 -12.10 16 17 C 0.08 3.13 5.47 71.98 0.39 3.53 16 18 C -0.09 -3.84 5.53 30.59 0.17 -3.67 16 19 C 0.03 1.36 4.97 29.85 0.15 1.50 16 20 C -0.54 -30.84 9.11 25.60 0.23 -30.61 16 21 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 22 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 23 N -0.94 -57.62 13.29 21.45 0.28 -57.33 16 24 Si 0.97 44.32 29.54 68.60 2.03 46.35 16 25 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 27 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 28 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.09 0.54 5.86 -2.39 -0.01 0.53 16 33 H 0.10 1.95 8.05 -2.91 -0.02 1.93 16 34 H 0.05 0.77 7.99 -2.39 -0.02 0.75 16 35 H 0.08 0.87 7.69 -2.39 -0.02 0.85 16 36 H 0.11 0.54 7.87 -2.39 -0.02 0.52 16 37 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.15 1.18 7.56 -2.39 -0.02 1.16 16 39 H 0.11 1.72 7.85 -2.39 -0.02 1.70 16 40 H 0.16 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.05 2.15 8.13 -2.39 -0.02 2.13 16 42 H 0.07 2.53 8.13 -2.39 -0.02 2.51 16 43 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 44 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 45 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 46 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -78.70 403.71 5.30 -73.40 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.94 Total: 9.35 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.54 Total: 0.70 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -1.94 Total: -72.34 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: 0.06 Total: -52.78 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -3.35 SS G_CDS: -1.32 Total: -4.68 kcal Total: -78.70 5.30 -73.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730323124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.660 kcal (2) G-P(sol) polarization free energy of solvation -78.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds