Wall clock time and date at job start Sat Apr 11 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39602 * 120.10325 * 279.66700 * 3 2 1 5 5 C 1.38004 * 120.00698 * 179.97438 * 4 3 2 6 6 C 1.38231 * 120.22434 * 359.68425 * 5 4 3 7 7 C 1.39006 * 120.20741 * 0.59458 * 6 5 4 8 8 N 1.39739 * 120.00640 * 179.69892 * 7 6 5 9 9 C 1.34775 * 120.00043 * 214.40634 * 8 7 6 10 10 O 1.21370 * 120.00105 * 5.53837 * 9 8 7 11 11 C 1.49360 * 119.99864 * 185.53923 * 9 8 7 12 12 O 1.21360 * 119.99800 * 359.97438 * 11 9 8 13 13 N 1.34775 * 119.99864 * 179.97438 * 11 9 8 14 14 C 1.46498 * 119.99881 * 179.97438 * 13 11 9 15 15 C 1.53069 * 109.44472 * 84.79528 * 14 13 11 16 16 C 1.53187 * 109.29834 * 181.23308 * 15 14 13 17 17 N 1.46927 * 108.89470 * 305.58136 * 16 15 14 18 18 C 1.36935 * 120.62693 * 233.51388 * 17 16 15 19 19 H 1.08008 * 119.99779 * 145.32868 * 18 17 16 20 20 C 1.38812 * 120.00350 * 325.32469 * 18 17 16 21 21 N 1.31619 * 119.99719 * 354.47719 * 20 18 17 22 22 Si 1.86803 * 120.00108 * 174.47508 * 20 18 17 23 23 H 1.48501 * 109.46965 * 60.00093 * 22 20 18 24 24 H 1.48500 * 109.46807 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47069 * 299.99851 * 22 20 18 26 26 C 1.46922 * 118.73782 * 53.53307 * 17 16 15 27 27 C 1.53049 * 109.45687 * 204.99708 * 14 13 11 28 28 C 1.38701 * 119.98517 * 359.42378 * 7 6 5 29 29 H 4.52052 * 14.03240 * 359.97438 * 4 2 1 30 30 H 1.07998 * 119.99695 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.88736 * 179.97438 * 5 4 3 32 32 H 1.07999 * 119.89526 * 180.29488 * 6 5 4 33 33 H 0.97005 * 120.00033 * 34.40551 * 8 7 6 34 34 H 0.96999 * 120.00009 * 359.97438 * 13 11 9 35 35 H 1.08995 * 109.46156 * 324.96434 * 14 13 11 36 36 H 1.09007 * 109.39211 * 61.35484 * 15 14 13 37 37 H 1.09004 * 109.61839 * 301.25460 * 15 14 13 38 38 H 1.08994 * 109.58881 * 185.71446 * 16 15 14 39 39 H 1.09005 * 109.58363 * 65.43656 * 16 15 14 40 40 H 0.97000 * 119.99978 * 180.02562 * 21 20 18 41 41 H 1.08993 * 109.59101 * 66.18530 * 26 17 16 42 42 H 1.09009 * 109.58302 * 186.46666 * 26 17 16 43 43 H 1.08999 * 109.49654 * 58.67652 * 27 14 13 44 44 H 1.08993 * 109.52520 * 298.59543 * 27 14 13 45 45 H 1.07999 * 120.10633 * 180.25214 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3063 -0.2019 1.1906 5 6 4.6863 -0.2014 1.1882 6 6 5.3800 -0.0073 0.0084 7 6 4.6920 0.2009 -1.1813 8 7 5.3976 0.4029 -2.3705 9 6 4.9096 1.2364 -3.3104 10 8 3.9109 1.8881 -3.0842 11 6 5.5976 1.3583 -4.6305 12 8 6.5964 0.7070 -4.8565 13 7 5.1093 2.1914 -5.5706 14 6 5.7845 2.3113 -6.8651 15 6 5.2970 1.2007 -7.7989 16 6 6.0276 1.3105 -9.1408 17 7 5.8487 2.6694 -9.6701 18 6 5.3608 2.8670 -10.9342 19 1 4.7260 3.7160 -11.1414 20 6 5.6820 1.9765 -11.9494 21 7 6.5411 1.0049 -11.7250 22 14 4.8949 2.1569 -13.6339 23 1 5.2379 3.4859 -14.2007 24 1 5.4015 1.0897 -14.5337 25 1 3.4201 2.0387 -13.5063 26 6 6.2038 3.8120 -8.8175 27 6 5.4686 3.6766 -7.4803 28 6 3.3050 0.2025 -1.1889 29 1 -1.0500 0.0005 0.0002 30 1 2.7680 -0.3589 2.1136 31 1 5.2261 -0.3578 2.1104 32 1 6.4600 -0.0127 0.0119 33 1 6.2387 -0.0568 -2.5194 34 1 4.3107 2.7116 -5.3900 35 1 6.8610 2.2173 -6.7233 36 1 4.2241 1.3073 -7.9590 37 1 5.5035 0.2288 -7.3506 38 1 5.6129 0.5873 -9.8429 39 1 7.0895 1.1116 -8.9960 40 1 6.7658 0.3828 -12.4345 41 1 7.2798 3.8181 -8.6440 42 1 5.9074 4.7395 -9.3075 43 1 5.7967 4.4654 -6.8033 44 1 4.3947 3.7622 -7.6452 45 1 2.7685 0.3600 -2.1129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730684389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:36 Heat of formation + Delta-G solvation = 36.598615 kcal Electronic energy + Delta-G solvation = -28138.248131 eV Core-core repulsion = 24122.922822 eV Total energy + Delta-G solvation = -4015.325309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.26690 -39.77004 -38.56409 -37.37149 -35.69203 -34.51095 -33.74433 -32.19029 -30.76673 -30.20670 -30.01709 -29.56013 -25.98852 -24.57964 -23.94371 -22.76182 -22.28721 -21.57277 -20.34432 -19.80240 -19.43242 -18.32763 -17.27867 -16.88612 -16.76521 -16.22547 -16.09077 -15.71066 -15.08622 -14.89554 -14.74308 -14.25407 -14.14155 -13.85424 -13.76138 -13.55603 -13.46737 -13.03819 -12.64241 -12.46660 -12.38933 -12.11192 -11.80264 -11.60529 -11.54581 -11.08944 -10.97329 -10.84925 -10.79309 -10.65862 -10.45375 -10.28710 -10.14513 -9.90940 -9.83272 -9.54691 -9.01556 -8.90638 -8.56435 -8.48214 -6.61643 -5.81387 -3.33835 0.48824 0.80788 1.39499 2.11041 2.43975 2.64048 3.09447 3.36415 3.41931 3.42536 3.45141 3.64633 3.91314 4.33019 4.45806 4.51992 4.68011 4.77064 5.05000 5.10735 5.19954 5.25167 5.38113 5.39626 5.54850 5.70410 5.73215 5.79287 5.87469 5.99654 6.01967 6.08570 6.12335 6.20586 6.33902 6.49083 6.51515 6.61398 6.65185 6.71701 6.80512 6.89430 7.20149 7.27251 7.34937 7.54949 7.68672 7.76562 7.94628 8.47395 9.20054 9.79403 10.39114 11.26702 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021326 B = 0.001974 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.665019 B =14183.399722 C =14716.578895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.150 4.150 3 C 0.028 3.972 4 C -0.110 4.110 5 C -0.098 4.098 6 C -0.131 4.131 7 C 0.147 3.853 8 N -0.649 5.649 9 C 0.509 3.491 10 O -0.499 6.499 11 C 0.505 3.495 12 O -0.517 6.517 13 N -0.687 5.687 14 C 0.148 3.852 15 C -0.149 4.149 16 C 0.175 3.825 17 N -0.592 5.592 18 C -0.258 4.258 19 H 0.063 0.937 20 C 0.008 3.992 21 N -0.903 5.903 22 Si 0.906 3.094 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.149 3.851 27 C -0.140 4.140 28 C -0.096 4.096 29 H 0.225 0.775 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.425 0.575 34 H 0.408 0.592 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.022 0.978 40 H 0.256 0.744 41 H 0.021 0.979 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.105 -2.116 25.971 26.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.150 4.150 3 C 0.027 3.973 4 C -0.129 4.129 5 C -0.117 4.117 6 C -0.151 4.151 7 C 0.053 3.947 8 N -0.296 5.296 9 C 0.291 3.709 10 O -0.372 6.372 11 C 0.284 3.716 12 O -0.393 6.393 13 N -0.338 5.338 14 C 0.046 3.954 15 C -0.189 4.189 16 C 0.049 3.951 17 N -0.315 5.315 18 C -0.387 4.387 19 H 0.081 0.919 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.736 3.264 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.022 3.978 27 C -0.180 4.180 28 C -0.116 4.116 29 H 0.242 0.758 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.264 0.736 34 H 0.243 0.757 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.039 0.961 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.002 -2.220 25.712 26.288 hybrid contribution -0.538 0.034 -0.833 0.993 sum -5.540 -2.186 24.879 25.582 Atomic orbital electron populations 1.24915 0.95783 0.98991 0.99015 1.19936 0.91948 1.01606 1.01552 1.15738 0.86742 1.01362 0.93409 1.21207 0.94194 1.00348 0.97120 1.20875 0.93663 0.99402 0.97724 1.21072 1.00421 1.02815 0.90797 1.17547 0.90990 1.00549 0.85564 1.43185 1.26102 1.44906 1.15413 1.20635 0.84995 0.79544 0.85700 1.90791 1.24569 1.42453 1.79411 1.19711 0.85174 0.81910 0.84757 1.90797 1.24660 1.43797 1.80067 1.46217 1.30604 1.42076 1.14937 1.21291 0.97450 0.97061 0.79637 1.22637 1.01270 0.96462 0.98551 1.20775 0.96232 0.88163 0.89933 1.44017 1.74866 0.99804 1.12818 1.19091 1.23656 1.11235 0.84761 0.91923 1.25296 0.97071 0.98908 0.97855 1.69930 1.34357 1.17846 1.32566 0.86329 0.78876 0.77342 0.83899 1.20790 1.21572 1.20922 1.20861 0.95554 0.92380 0.89039 1.22372 1.02120 0.94327 0.99191 1.21177 0.92342 0.99474 0.98600 0.75796 0.85347 0.84789 0.84906 0.73601 0.75652 0.89461 0.92433 0.92738 0.89048 0.96010 0.93410 0.96079 0.92122 0.92364 0.91576 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 19.25 29.55 0.57 -0.86 16 2 C -0.15 -1.58 13.24 -38.84 -0.51 -2.09 16 3 C 0.03 0.30 5.72 -107.03 -0.61 -0.32 16 4 C -0.11 -0.89 9.75 -39.16 -0.38 -1.27 16 5 C -0.10 -0.67 10.02 -39.67 -0.40 -1.07 16 6 C -0.13 -1.01 9.96 -39.30 -0.39 -1.40 16 7 C 0.15 1.51 6.24 -83.80 -0.52 0.98 16 8 N -0.65 -6.77 5.32 -10.33 -0.05 -6.82 16 9 C 0.51 6.51 7.61 -11.63 -0.09 6.42 16 10 O -0.50 -7.17 14.26 5.48 0.08 -7.09 16 11 C 0.51 7.26 7.85 -11.63 -0.09 7.17 16 12 O -0.52 -8.53 16.15 5.49 0.09 -8.44 16 13 N -0.69 -9.80 5.07 -54.21 -0.27 -10.07 16 14 C 0.15 2.48 2.41 -67.87 -0.16 2.32 16 15 C -0.15 -2.87 5.66 -26.60 -0.15 -3.02 16 16 C 0.18 4.15 5.22 -3.71 -0.02 4.13 16 17 N -0.59 -14.49 2.98 -172.32 -0.51 -15.00 16 18 C -0.26 -6.92 9.56 -15.06 -0.14 -7.07 16 19 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 20 C 0.01 0.22 5.14 -17.43 -0.09 0.13 16 21 N -0.90 -25.92 11.02 55.49 0.61 -25.31 16 22 Si 0.91 21.42 29.56 -169.99 -5.02 16.39 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.15 2.99 6.52 -3.71 -0.02 2.96 16 27 C -0.14 -2.27 5.55 -26.61 -0.15 -2.42 16 28 C -0.10 -1.10 8.35 -38.98 -0.33 -1.43 16 29 H 0.23 0.98 7.80 -54.09 -0.42 0.56 16 30 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.43 3.69 8.30 -40.82 -0.34 3.35 16 34 H 0.41 5.19 8.07 -40.82 -0.33 4.86 16 35 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 36 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 2.43 6.20 -51.93 -0.32 2.11 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.18 7.93 -51.92 -0.41 0.77 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.14 1.78 6.52 -52.49 -0.34 1.44 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -32.03 385.28 -8.69 -40.72 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.91 Total: 6.65 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -3.50 Total: 3.16 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.23 Total: -57.20 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.17 Total: -15.53 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.03 -8.69 -40.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730684389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.322 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds