Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00189 * 2 1 4 4 C 1.50702 * 109.47565 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00030 * 89.98976 * 4 3 2 6 6 C 1.38233 * 119.99995 * 180.02562 * 5 4 3 7 7 C 1.38235 * 119.99959 * 0.02562 * 6 5 4 8 8 S 1.76195 * 120.00008 * 179.97438 * 7 6 5 9 9 O 1.42102 * 106.40608 * 330.17303 * 8 7 6 10 10 O 1.42107 * 106.40326 * 197.25254 * 8 7 6 11 11 N 1.65603 * 107.22112 * 83.71357 * 8 7 6 12 12 C 1.46500 * 119.99602 * 276.05640 * 11 8 7 13 13 C 1.50703 * 109.46614 * 265.26826 * 12 11 8 14 14 H 1.08000 * 120.00320 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99604 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00350 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99873 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47210 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47061 * 120.00174 * 17 15 13 20 20 H 1.48498 * 109.47116 * 239.99788 * 17 15 13 21 21 C 1.46493 * 119.99916 * 96.32448 * 11 8 7 22 22 C 1.52999 * 109.47458 * 246.22222 * 21 11 8 23 23 C 1.53003 * 109.46680 * 63.91896 * 22 21 11 24 24 C 1.52998 * 109.47540 * 183.91523 * 22 21 11 25 25 C 1.38240 * 119.99899 * 0.25054 * 7 6 5 26 26 C 1.38233 * 119.99467 * 270.02273 * 4 3 2 27 27 H 1.08994 * 109.46876 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47412 * 300.01142 * 1 2 3 29 29 H 1.09007 * 109.46357 * 60.00625 * 1 2 3 30 30 H 1.08999 * 109.47834 * 59.99120 * 3 2 1 31 31 H 1.09011 * 109.46810 * 299.99450 * 3 2 1 32 32 H 1.08002 * 119.99856 * 0.02562 * 5 4 3 33 33 H 1.07999 * 120.00103 * 179.97438 * 6 5 4 34 34 H 1.08994 * 109.47474 * 25.27402 * 12 11 8 35 35 H 1.08996 * 109.46865 * 145.27586 * 12 11 8 36 36 H 0.96999 * 120.00308 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.47438 * 6.22440 * 21 11 8 38 38 H 1.09005 * 109.47303 * 126.22185 * 21 11 8 39 39 H 1.08998 * 109.47147 * 303.92437 * 22 21 11 40 40 H 1.09012 * 109.46980 * 173.79438 * 23 22 21 41 41 H 1.08997 * 109.47193 * 293.78883 * 23 22 21 42 42 H 1.08999 * 109.47491 * 53.79496 * 23 22 21 43 43 H 1.09000 * 109.46606 * 60.00654 * 24 22 21 44 44 H 1.09002 * 109.47534 * 179.97438 * 24 22 21 45 45 H 1.08992 * 109.47249 * 300.00680 * 24 22 21 46 46 H 1.08002 * 119.99876 * 179.72357 * 25 7 6 47 47 H 1.07998 * 120.00586 * 359.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2021 1.1315 -1.1962 6 6 5.5801 1.0219 -1.1956 7 6 6.2685 0.9667 0.0018 8 16 8.0249 0.8263 0.0026 9 8 8.3714 0.1186 -1.1799 10 8 8.3921 0.3912 1.3046 11 7 8.6390 2.3545 -0.1702 12 6 8.7758 2.9423 -1.5051 13 6 10.1730 2.7050 -2.0175 14 1 10.8874 2.1695 -1.4098 15 6 10.5392 3.1714 -3.2623 16 7 9.6692 3.8230 -4.0026 17 14 12.2709 2.8767 -3.8978 18 1 13.0495 2.1235 -2.8820 19 1 12.2092 2.0907 -5.1563 20 1 12.9304 4.1810 -4.1607 21 6 9.0508 3.1164 1.0114 22 6 8.1316 4.3273 1.1834 23 6 6.7045 3.8492 1.4585 24 6 8.6206 5.1760 2.3588 25 6 5.5785 1.0159 1.1987 26 6 4.2010 1.1317 1.1981 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.6886 1.8465 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.6642 1.1742 -2.1317 33 1 6.1188 0.9785 -2.1307 34 1 8.0572 2.4794 -2.1814 35 1 8.5858 4.0142 -1.4513 36 1 9.9267 4.1509 -4.8784 37 1 8.9841 2.4812 1.8947 38 1 10.0789 3.4557 0.8847 39 1 8.1450 4.9259 0.2726 40 1 6.0723 4.7066 1.6899 41 1 6.3161 3.3388 0.5773 42 1 6.7083 3.1618 2.3044 43 1 9.6373 5.5166 2.1627 44 1 7.9660 6.0390 2.4810 45 1 8.6072 4.5774 3.2695 46 1 6.1161 0.9683 2.1343 47 1 3.6623 1.1745 2.1332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774765054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = -100.120814 kcal Electronic energy + Delta-G solvation = -28931.275232 eV Core-core repulsion = 25013.172523 eV Total energy + Delta-G solvation = -3918.102709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.53909 -37.78527 -37.15748 -36.57132 -35.17513 -33.72196 -32.34086 -32.08796 -31.01207 -27.67441 -27.44540 -26.85827 -25.69835 -24.94576 -22.86189 -22.48509 -21.82096 -19.63147 -18.55770 -17.55016 -16.89009 -16.68776 -16.36367 -16.31258 -16.01404 -15.51180 -14.88851 -14.64877 -14.50129 -14.32573 -14.06873 -13.75655 -13.72242 -13.45097 -12.82814 -12.58731 -12.50720 -12.31452 -12.13222 -12.05142 -11.91723 -11.66069 -11.60211 -11.44177 -11.24169 -11.16739 -11.09619 -11.05353 -10.68136 -10.67326 -10.50738 -10.38387 -10.21931 -10.03235 -9.88038 -9.67330 -9.18228 -8.92911 -8.43370 -8.01516 -6.05580 -4.08555 0.73004 1.09853 1.38465 3.20739 3.32279 3.40208 3.45731 3.71032 3.90520 4.34801 4.46569 4.58235 4.61951 4.81771 4.91540 4.98922 5.01954 5.12393 5.18845 5.18996 5.27760 5.29990 5.34046 5.34508 5.40265 5.63023 5.73886 5.74462 5.84370 5.96502 6.01410 6.05845 6.10548 6.15816 6.23030 6.27538 6.33280 6.41155 6.50950 6.61528 6.77163 6.78456 6.88293 7.23233 7.39245 7.60715 7.92566 8.21125 8.94082 9.56424 11.02964 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.003695 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.428756 B = 7575.520565 C = 8397.014110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.098 3.902 4 C -0.048 4.048 5 C -0.121 4.121 6 C -0.015 4.015 7 C -0.664 4.664 8 S 2.681 3.319 9 O -0.941 6.941 10 O -0.977 6.977 11 N -0.978 5.978 12 C 0.257 3.743 13 C -0.523 4.523 14 H 0.062 0.938 15 C 0.062 3.938 16 N -0.897 5.897 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.284 1.284 21 C 0.127 3.873 22 C -0.116 4.116 23 C -0.154 4.154 24 C -0.142 4.142 25 C -0.021 4.021 26 C -0.125 4.125 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.130 0.870 33 H 0.144 0.856 34 H 0.035 0.965 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.139 0.861 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.749 -0.315 10.879 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.022 3.978 4 C -0.048 4.048 5 C -0.140 4.140 6 C -0.034 4.034 7 C -0.749 4.749 8 S 2.769 3.231 9 O -0.931 6.931 10 O -0.968 6.968 11 N -0.817 5.817 12 C 0.135 3.865 13 C -0.563 4.563 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.536 5.536 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.211 1.211 21 C 0.001 3.999 22 C -0.136 4.136 23 C -0.212 4.212 24 C -0.200 4.200 25 C -0.040 4.040 26 C -0.144 4.144 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.162 0.838 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.157 0.843 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.213 -1.161 10.768 18.675 hybrid contribution -0.101 0.574 -0.608 0.842 sum -15.315 -0.587 10.161 18.388 Atomic orbital electron populations 1.22775 0.80851 1.02946 1.00041 1.87991 1.19709 1.27145 1.95423 1.21434 0.89793 0.85302 1.01284 1.19780 0.93883 0.97286 0.93868 1.21143 0.94325 1.00818 0.97666 1.21022 0.94405 0.90803 0.97175 1.31514 1.28840 1.15405 0.99101 1.02349 0.73538 0.73835 0.73348 1.93612 1.81370 1.70211 1.47916 1.93484 1.82199 1.80460 1.40635 1.57374 1.75366 1.34654 1.14313 1.19073 0.97432 0.94858 0.75110 1.21516 0.97332 1.35772 1.01671 0.91989 1.24910 0.97645 0.94967 0.96473 1.69922 1.34434 1.37926 1.11328 0.86478 0.84372 0.77801 0.79026 1.19605 1.20860 1.21065 1.21314 0.98873 0.92669 0.87062 1.21513 0.95181 0.97533 0.99368 1.22069 0.96582 1.00998 1.01505 1.21759 1.01176 0.99259 0.97848 1.20887 0.94298 0.92083 0.96776 1.21059 0.94248 1.01581 0.97491 0.89457 0.94000 0.93914 0.92100 0.91975 0.85204 0.83832 0.94743 0.94234 0.92804 0.90057 0.90266 0.89904 0.93058 0.92187 0.93035 0.92473 0.93003 0.92918 0.84292 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.25 10.69 -35.23 -0.38 -4.62 16 3 C 0.10 0.96 6.06 36.01 0.22 1.18 16 4 C -0.05 -0.60 5.51 -104.63 -0.58 -1.17 16 5 C -0.12 -1.64 9.70 -39.59 -0.38 -2.03 16 6 C -0.02 -0.24 9.52 -39.58 -0.38 -0.62 16 7 C -0.66 -11.08 4.45 -39.58 -0.18 -11.26 16 8 S 2.68 53.65 5.61 -107.50 -0.60 53.05 16 9 O -0.94 -22.40 16.66 -57.17 -0.95 -23.36 16 10 O -0.98 -19.83 15.51 -57.17 -0.89 -20.71 16 11 N -0.98 -19.72 2.38 -115.67 -0.28 -20.00 16 12 C 0.26 6.16 4.99 -5.19 -0.03 6.13 16 13 C -0.52 -14.30 9.38 -34.44 -0.32 -14.62 16 14 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.90 -25.55 13.29 55.43 0.74 -24.81 16 17 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.13 2.18 5.26 -4.05 -0.02 2.15 16 22 C -0.12 -1.70 2.94 -90.62 -0.27 -1.97 16 23 C -0.15 -2.07 7.97 37.16 0.30 -1.78 16 24 C -0.14 -1.71 9.19 37.16 0.34 -1.37 16 25 C -0.02 -0.30 7.25 -39.58 -0.29 -0.59 16 26 C -0.12 -1.55 9.70 -39.58 -0.38 -1.93 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.04 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.06 0.52 8.09 -51.92 -0.42 0.10 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.14 2.40 7.77 -52.49 -0.41 1.99 16 34 H 0.03 0.87 7.78 -51.93 -0.40 0.46 16 35 H 0.04 0.96 6.72 -51.93 -0.35 0.61 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.08 1.29 6.70 -51.93 -0.35 0.95 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 1.36 6.81 -51.93 -0.35 1.01 16 40 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.06 0.88 5.50 -51.93 -0.29 0.59 16 42 H 0.05 0.63 7.31 -51.93 -0.38 0.25 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.14 1.82 7.22 -52.49 -0.38 1.44 16 47 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 392.77 15.07 5.92 5.92 Total: -1.00 -32.89 392.77 -9.93 -42.82 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.52 Total: 0.02 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -0.95 Total: -24.91 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.46 Total: -44.81 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -2.22 Total: -48.69 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 53.65 SS G_CDS: -0.60 Total: 53.05 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.89 -9.93 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774765054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.305 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds