Wall clock time and date at job start Sat Apr 11 2020 06:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00189 * 2 1 4 4 C 1.50702 * 109.47565 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00030 * 89.98976 * 4 3 2 6 6 C 1.38233 * 119.99995 * 180.02562 * 5 4 3 7 7 C 1.38235 * 119.99959 * 0.02562 * 6 5 4 8 8 S 1.76195 * 120.00008 * 179.97438 * 7 6 5 9 9 O 1.42102 * 106.40608 * 330.17303 * 8 7 6 10 10 O 1.42107 * 106.40326 * 197.25254 * 8 7 6 11 11 N 1.65603 * 107.22112 * 83.71357 * 8 7 6 12 12 C 1.46500 * 119.99602 * 276.05640 * 11 8 7 13 13 C 1.50703 * 109.46614 * 265.26826 * 12 11 8 14 14 H 1.08000 * 120.00320 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99604 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00350 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99873 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47210 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47061 * 120.00174 * 17 15 13 20 20 H 1.48498 * 109.47116 * 239.99788 * 17 15 13 21 21 C 1.46493 * 119.99916 * 96.32448 * 11 8 7 22 22 C 1.52999 * 109.47458 * 246.22222 * 21 11 8 23 23 C 1.53003 * 109.46680 * 63.91896 * 22 21 11 24 24 C 1.52998 * 109.47540 * 183.91523 * 22 21 11 25 25 C 1.38240 * 119.99899 * 0.25054 * 7 6 5 26 26 C 1.38233 * 119.99467 * 270.02273 * 4 3 2 27 27 H 1.08994 * 109.46876 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47412 * 300.01142 * 1 2 3 29 29 H 1.09007 * 109.46357 * 60.00625 * 1 2 3 30 30 H 1.08999 * 109.47834 * 59.99120 * 3 2 1 31 31 H 1.09011 * 109.46810 * 299.99450 * 3 2 1 32 32 H 1.08002 * 119.99856 * 0.02562 * 5 4 3 33 33 H 1.07999 * 120.00103 * 179.97438 * 6 5 4 34 34 H 1.08994 * 109.47474 * 25.27402 * 12 11 8 35 35 H 1.08996 * 109.46865 * 145.27586 * 12 11 8 36 36 H 0.96999 * 120.00308 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.47438 * 6.22440 * 21 11 8 38 38 H 1.09005 * 109.47303 * 126.22185 * 21 11 8 39 39 H 1.08998 * 109.47147 * 303.92437 * 22 21 11 40 40 H 1.09012 * 109.46980 * 173.79438 * 23 22 21 41 41 H 1.08997 * 109.47193 * 293.78883 * 23 22 21 42 42 H 1.08999 * 109.47491 * 53.79496 * 23 22 21 43 43 H 1.09000 * 109.46606 * 60.00654 * 24 22 21 44 44 H 1.09002 * 109.47534 * 179.97438 * 24 22 21 45 45 H 1.08992 * 109.47249 * 300.00680 * 24 22 21 46 46 H 1.08002 * 119.99876 * 179.72357 * 25 7 6 47 47 H 1.07998 * 120.00586 * 359.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.2021 1.1315 -1.1962 6 6 5.5801 1.0219 -1.1956 7 6 6.2685 0.9667 0.0018 8 16 8.0249 0.8263 0.0026 9 8 8.3714 0.1186 -1.1799 10 8 8.3921 0.3912 1.3046 11 7 8.6390 2.3545 -0.1702 12 6 8.7758 2.9423 -1.5051 13 6 10.1730 2.7050 -2.0175 14 1 10.8874 2.1695 -1.4098 15 6 10.5392 3.1714 -3.2623 16 7 9.6692 3.8230 -4.0026 17 14 12.2709 2.8767 -3.8978 18 1 13.0495 2.1235 -2.8820 19 1 12.2092 2.0907 -5.1563 20 1 12.9304 4.1810 -4.1607 21 6 9.0508 3.1164 1.0114 22 6 8.1316 4.3273 1.1834 23 6 6.7045 3.8492 1.4585 24 6 8.6206 5.1760 2.3588 25 6 5.5785 1.0159 1.1987 26 6 4.2010 1.1317 1.1981 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 1.6886 1.8465 0.8899 31 1 1.6887 1.8463 -0.8901 32 1 3.6642 1.1742 -2.1317 33 1 6.1188 0.9785 -2.1307 34 1 8.0572 2.4794 -2.1814 35 1 8.5858 4.0142 -1.4513 36 1 9.9267 4.1509 -4.8784 37 1 8.9841 2.4812 1.8947 38 1 10.0789 3.4557 0.8847 39 1 8.1450 4.9259 0.2726 40 1 6.0723 4.7066 1.6899 41 1 6.3161 3.3388 0.5773 42 1 6.7083 3.1618 2.3044 43 1 9.6373 5.5166 2.1627 44 1 7.9660 6.0390 2.4810 45 1 8.6072 4.5774 3.2695 46 1 6.1161 0.9683 2.1343 47 1 3.6623 1.1745 2.1332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774765054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:58 Heat of formation + Delta-G solvation = -121.275196 kcal Electronic energy + Delta-G solvation = -28932.192555 eV Core-core repulsion = 25013.172523 eV Total energy + Delta-G solvation = -3919.020031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.56255 -38.67384 -38.49197 -38.22670 -36.87332 -35.40398 -33.93130 -33.35439 -32.11250 -29.31752 -28.43037 -27.87209 -26.59224 -26.36746 -24.40942 -23.89754 -22.88757 -20.89010 -20.01102 -19.09176 -18.48643 -18.24950 -17.40301 -17.37264 -17.07175 -16.90322 -16.36582 -15.83333 -15.77253 -15.59933 -15.32433 -15.20972 -14.78147 -14.57078 -14.37083 -13.93182 -13.80596 -13.62113 -13.30789 -13.20417 -13.12656 -13.06088 -12.92356 -12.91481 -12.86288 -12.49823 -12.41973 -12.30125 -12.28020 -12.20567 -12.04717 -11.72075 -11.69876 -11.54877 -11.32009 -10.67454 -10.56823 -10.30580 -10.02738 -9.70235 -8.18430 -6.28720 -0.59992 -0.27597 0.29040 1.38287 1.41207 1.52555 2.00010 2.39441 2.43338 2.80044 3.08676 3.12532 3.32993 3.71263 3.79800 3.89643 3.92407 4.10095 4.17015 4.22813 4.28536 4.39310 4.43211 4.51373 4.56259 4.60404 4.67261 4.74852 4.82828 4.88344 4.88915 4.94749 5.01293 5.06837 5.08729 5.10170 5.16753 5.23689 5.34601 5.37690 5.41761 5.51519 5.62750 5.74744 5.80377 5.96001 6.13548 6.16931 6.78868 7.39257 8.89132 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.003695 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.428756 B = 7575.520565 C = 8397.014110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.098 3.902 4 C -0.042 4.042 5 C -0.123 4.123 6 C -0.038 4.038 7 C -0.669 4.669 8 S 2.684 3.316 9 O -0.992 6.992 10 O -0.985 6.985 11 N -0.982 5.982 12 C 0.276 3.724 13 C -0.543 4.543 14 H 0.051 0.949 15 C 0.014 3.986 16 N -0.923 5.923 17 Si 0.952 3.048 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.270 1.270 21 C 0.119 3.881 22 C -0.112 4.112 23 C -0.153 4.153 24 C -0.137 4.137 25 C -0.024 4.024 26 C -0.116 4.116 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.149 0.851 33 H 0.122 0.878 34 H 0.015 0.985 35 H 0.033 0.967 36 H 0.266 0.734 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.152 0.848 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.995 0.350 12.849 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.022 3.978 4 C -0.042 4.042 5 C -0.142 4.142 6 C -0.058 4.058 7 C -0.759 4.759 8 S 2.778 3.222 9 O -0.983 6.983 10 O -0.976 6.976 11 N -0.820 5.820 12 C 0.152 3.848 13 C -0.582 4.582 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.563 5.563 17 Si 0.778 3.222 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.195 1.195 21 C -0.006 4.006 22 C -0.132 4.132 23 C -0.210 4.210 24 C -0.195 4.195 25 C -0.044 4.044 26 C -0.134 4.134 27 H 0.112 0.888 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.166 0.834 33 H 0.140 0.860 34 H 0.033 0.967 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.170 0.830 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -17.402 -0.491 12.757 21.583 hybrid contribution 0.434 0.332 -1.168 1.290 sum -16.967 -0.159 11.589 20.548 Atomic orbital electron populations 1.22966 0.78931 1.03880 1.01321 1.87938 1.21829 1.27734 1.95717 1.21523 0.87568 0.85400 1.03324 1.20200 0.95818 0.94968 0.93219 1.21370 0.93135 1.00214 0.99462 1.20977 0.95816 0.92692 0.96282 1.30779 1.25776 1.18656 1.00656 1.01755 0.74877 0.73247 0.72292 1.93542 1.83240 1.71642 1.49854 1.93455 1.83289 1.80557 1.40265 1.57196 1.76525 1.34549 1.13755 1.18590 0.95308 0.94225 0.76638 1.21838 0.98679 1.35625 1.02075 0.93109 1.25671 1.01310 0.94817 0.96732 1.70004 1.36033 1.38566 1.11700 0.85593 0.80180 0.78206 0.78254 1.19559 1.20612 1.19549 1.21565 0.99033 0.93783 0.86237 1.21445 0.95813 0.96314 0.99619 1.22059 0.95624 1.01959 1.01360 1.21727 1.01233 0.99519 0.97023 1.21112 0.95458 0.91746 0.96038 1.21462 0.93315 0.99576 0.99079 0.88836 0.92399 0.92916 0.89516 0.90578 0.83363 0.85967 0.96708 0.94908 0.92459 0.88641 0.91484 0.92353 0.91064 0.93771 0.91583 0.92825 0.91339 0.91348 0.83017 0.81763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.82 10.69 -148.98 -1.59 -9.41 16 3 C 0.10 1.55 6.06 71.24 0.43 1.98 16 4 C -0.04 -0.92 5.51 -19.87 -0.11 -1.03 16 5 C -0.12 -3.24 9.70 22.27 0.22 -3.02 16 6 C -0.04 -1.27 9.52 22.27 0.21 -1.06 16 7 C -0.67 -22.61 4.45 22.27 0.10 -22.51 16 8 S 2.68 112.02 5.61 -56.49 -0.32 111.70 16 9 O -0.99 -50.42 16.66 -128.00 -2.13 -52.55 16 10 O -0.99 -40.56 15.51 -128.00 -1.99 -42.54 16 11 N -0.98 -41.41 2.38 -519.86 -1.24 -42.65 16 12 C 0.28 13.97 4.99 85.63 0.43 14.40 16 13 C -0.54 -30.94 9.38 25.60 0.24 -30.70 16 14 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 15 C 0.01 0.80 5.46 84.65 0.46 1.26 16 16 N -0.92 -54.02 13.29 21.45 0.28 -53.73 16 17 Si 0.95 45.17 29.54 68.60 2.03 47.19 16 18 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 21 C 0.12 4.15 5.26 86.38 0.45 4.61 16 22 C -0.11 -3.24 2.94 -10.79 -0.03 -3.27 16 23 C -0.15 -3.85 7.97 71.98 0.57 -3.28 16 24 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 25 C -0.02 -0.65 7.25 22.27 0.16 -0.49 16 26 C -0.12 -2.47 9.70 22.27 0.22 -2.26 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.09 0.95 8.08 -2.39 -0.02 0.93 16 31 H 0.08 1.00 8.09 -2.38 -0.02 0.98 16 32 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 33 H 0.12 4.49 7.77 -2.91 -0.02 4.46 16 34 H 0.01 0.81 7.78 -2.39 -0.02 0.79 16 35 H 0.03 1.69 6.72 -2.39 -0.02 1.67 16 36 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.10 3.03 6.70 -2.39 -0.02 3.01 16 38 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 39 H 0.06 1.97 6.81 -2.39 -0.02 1.96 16 40 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.04 1.26 5.50 -2.39 -0.01 1.24 16 42 H 0.07 1.45 7.31 -2.39 -0.02 1.44 16 43 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.15 3.62 7.22 -2.91 -0.02 3.59 16 47 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -73.49 392.77 1.25 -72.23 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.95 Total: 15.99 kcal Atomic # 6 Polarization: -51.50 SS G_CDS: 5.26 Total: -46.24 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -0.95 Total: -96.38 kcal Atomic # 8 Polarization: -98.79 SS G_CDS: -5.71 Total: -104.50 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 112.02 SS G_CDS: -0.32 Total: 111.70 kcal Total: -73.49 1.25 -72.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774765054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.042 kcal (2) G-P(sol) polarization free energy of solvation -73.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds